Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0019788 Camellia sinensis var. sinensis HOM05D007342 ORTHO05D009252 1.5e-309 1065.4 577 100.0
Actinidia00019 Actinidia chinensis HOM05D007342 ORTHO05D009252 4.0e-145 519.2 630 52.4
Actinidia14301 Actinidia chinensis HOM05D007342 ORTHO05D009252 1.0e-137 494.6 671 48.4
Dinv29744 Davidia involucrata HOM05D007342 ORTHO05D009252 1.0e-132 478.0 575 51.7
GSVIVG01017735001 Vitis vinifera HOM05D007342 ORTHO05D009252 7.3e-99 365.5 583 44.8
vmacro15234 Vaccinium macrocarpon HOM05D007342 ORTHO05D009252 1.9e-91 340.9 569 44.3
MSTRG.10096 Avicennia marina HOM05D007342 ORTHO05D009252 2.9e-87 327.0 608 38.7
Cfa015389 Carpinus fangiana HOM05D007342 ORTHO05D009252 2.3e-84 317.4 521 42.0
Cpa.g.sc16.174 Carica papaya HOM05D007342 ORTHO05D009252 1.3e-82 311.6 568 39.3
Rhsim02G0008900 Rhododendron simsii HOM05D007342 ORTHO05D009252 2.1e-82 310.8 532 42.5
Haze_01197 Corylus avellana HOM05D007342 ORTHO05D009252 2.8e-82 310.5 558 39.6
Potri.008G222000 Populus trichocarpa HOM05D007342 ORTHO05D009252 5.8e-80 302.8 548 40.0
Sopen01g030760 Solanum pennellii HOM05D007342 ORTHO05D009252 2.4e-78 297.4 666 36.0
TWI53G0473 Tripterygium wilfordii HOM05D007342 ORTHO05D009252 4.2e-78 296.6 589 39.2
Sabra08G0152900 Salix brachista HOM05D007342 ORTHO05D009252 2.7e-77 293.9 566 38.2
PGSC0003DMG400006281 Solanum tuberosum HOM05D007342 ORTHO05D009252 2.7e-77 293.9 670 35.2
Gorai.006G262500 Gossypium raimondii HOM05D007342 ORTHO05D009252 6.0e-77 292.7 560 39.1
Duzib212G0754 Durio zibethinus HOM05D007342 ORTHO05D009252 1.1e-75 288.5 572 38.3
Lsat_1_v5_gn_5_56841 Lactuca sativa HOM05D007342 ORTHO05D009252 1.9e-75 287.7 538 38.8
Cc03_g01870 Coffea canephora HOM05D007342 ORTHO05D009252 3.3e-75 287.0 601 37.9
Migut.G00157 Erythranthe guttata HOM05D007342 ORTHO05D009252 1.3e-74 285.0 552 38.2
ClCG06G005120 Citrullus lanatus HOM05D007342 ORTHO05D009252 3.7e-74 283.5 576 36.1
QL06p008994 Quercus lobata HOM05D007342 ORTHO05D009252 8.1e-74 282.3 535 40.4
Peaxi162Scf01123g00234 Petunia axillaris HOM05D007342 ORTHO05D009252 3.1e-73 280.4 548 40.1
Solyc01g080760.4 Solanum lycopersicum HOM05D007342 ORTHO05D009252 6.9e-73 279.3 636 35.8
Nitab4.5_0000059g0470 Nicotiana tabacum HOM05D007342 ORTHO05D009252 2.6e-72 277.3 701 33.1
COL.COLO4_13866 Corchorus olitorius HOM05D007342 ORTHO05D009252 4.5e-72 276.6 567 37.4
Prupe.1G135700 Prunus persica HOM05D007342 ORTHO05D009252 4.5e-72 276.6 578 37.2
MELO3C021329.2 Cucumis melo HOM05D007342 ORTHO05D009252 9.9e-72 275.4 572 36.5
Thecc.04G285100 Theobroma cacao HOM05D007342 ORTHO05D009252 4.9e-71 273.1 549 37.5
Nitab4.5_0000191g0200 Nicotiana tabacum HOM05D007342 ORTHO05D009252 6.4e-71 272.7 701 33.1
Gohir.D09G239700 Gossypium hirsutum HOM05D007342 ORTHO05D009252 5.5e-70 269.6 557 37.3
FvH4_4g18220 Fragaria vesca HOM05D007342 ORTHO05D009252 1.2e-69 268.5 569 36.9
FAN12G3549 Fragaria x ananassa HOM05D007342 ORTHO05D009252 1.2e-69 268.5 569 36.9
FAN17G1678 Fragaria x ananassa HOM05D007342 ORTHO05D009252 2.7e-69 267.3 565 38.4
FAN12G0202 Fragaria x ananassa HOM05D007342 ORTHO05D009252 3.5e-69 266.9 569 36.7
RcHm_v2.0_Chr4g0422351 Rosa chinensis HOM05D007342 ORTHO05D009252 1.9e-67 261.2 565 37.5
ECA240G4261 Erigeron canadensis HOM05D007342 ORTHO05D009252 4.3e-67 260.0 586 36.5
CANSAT78G2360 Cannabis sativa HOM05D007342 ORTHO05D009252 1.6e-66 258.1 596 34.1
Nn4g25834 Nelumbo nucifera HOM05D007342 ORTHO05D009252 4.0e-65 253.4 644 33.4
Manes.03G195600 Manihot esculenta HOM05D007342 ORTHO05D009252 5.3e-65 253.1 557 37.5
MD13G1168100 Malus domestica HOM05D007342 ORTHO05D009252 6.9e-65 252.7 605 34.9
Gohir.A09G238800 Gossypium hirsutum HOM05D007342 ORTHO05D009252 1.5e-64 251.5 537 37.4
Lj3P820T26 Lonicera japonica HOM05D007342 ORTHO05D009252 1.9e-62 244.6 420 43.6
PGR031G1889 Punica granatum HOM05D007342 ORTHO05D009252 7.1e-62 242.7 555 36.6
Aqoxy5G00727 Aquilegia oxysepala HOM05D007342 ORTHO05D009252 1.2e-61 241.9 578 34.8
DCAR_023285 Daucus carota HOM05D007342 ORTHO05D009252 1.3e-60 238.4 531 38.6
SalBow2G3523 Salvia bowleyana HOM05D007342 ORTHO05D009252 1.3e-60 238.4 572 35.3
Medtr4g119920 Medicago truncatula HOM05D007342 ORTHO05D009252 3.3e-59 233.8 565 35.4
Sc19g0005330 Simmondsia chinensis HOM05D007342 ORTHO05D009252 3.7e-58 230.3 547 34.7
Ciclev10004639m.g Citrus clementina HOM05D007342 ORTHO05D009252 1.4e-57 228.4 569 34.1
SGA_v2.0_scaffold67G22631 Striga asiatica HOM05D007342 ORTHO05D009252 2.4e-57 227.6 541 34.9
Hund19378 Selenicereus undatus HOM05D007342 ORTHO05D009252 2.6e-56 224.2 639 32.4
Glyma.07G247200 Glycine max HOM05D007342 ORTHO05D009252 2.9e-55 220.7 531 35.4
Lj4g0010877 Lotus japonicus HOM05D007342 ORTHO05D009252 3.6e-53 213.8 614 32.2
CiPaw.01G148300 Carya illinoinensis HOM05D007342 ORTHO05D009252 5.1e-52 209.9 402 38.6
THA.LOC104820266 Tarenaya hassleriana HOM05D007342 ORTHO05D009252 1.7e-50 204.9 524 34.5
Eucgr.B01323 Eucalyptus grandis HOM05D007342 ORTHO05D009252 2.8e-50 204.1 603 33.5
BcaC06g33445 Brassica carinata HOM05D007342 ORTHO05D009252 1.2e-48 198.7 541 32.7
C07p47420 Brassica napus HOM05D007342 ORTHO05D009252 1.2e-48 198.7 541 32.7
BolC7t45269H Brassica oleracea HOM05D007342 ORTHO05D009252 1.2e-48 198.7 541 32.7
Atru.chr4.2846 Acer truncatum HOM05D007342 ORTHO05D009252 2.0e-48 198.0 537 33.9
VMungo1215G0467 Vigna mungo HOM05D005283 ORTHO05D006769 2.6e-48 197.6 593 31.9
AL7G39470 Arabidopsis lyrata HOM05D007342 ORTHO05D009252 5.9e-48 196.4 549 33.2
Sp7g14200 Schrenkiella parvula HOM05D007342 ORTHO05D009252 2.2e-47 194.5 550 34.2
Lalb_Chr12g0196601 Lupinus albus HOM05D007342 ORTHO05D009252 2.9e-47 194.1 579 31.6
TPR.G3194 Trifolium pratense HOM05D007342 ORTHO05D009252 6.5e-47 193.0 561 33.9
Carub.0007s2583 Capsella rubella HOM05D007342 ORTHO05D009252 8.5e-47 192.6 530 33.4
BraA03t14036Z Brassica rapa HOM05D007342 ORTHO05D009252 1.1e-46 192.2 525 33.1
Thhalv10025032m.g Eutrema salsugineum HOM05D007342 ORTHO05D009252 1.4e-46 191.8 545 32.1
arahy.Tifrunner.gnm1.ann1.4CZB08 Arachis hypogaea HOM05D007342 ORTHO05D009252 1.9e-46 191.4 621 31.1
Glyma.17G026800 Glycine max HOM05D007342 ORTHO05D009252 5.5e-46 189.9 546 33.2
AUR62020686 Chenopodium quinoa HOM05D007342 ORTHO05D009252 3.6e-45 187.2 649 29.7
Lj3P817T41 Lonicera japonica HOM05D007342 ORTHO05D009252 7.9e-45 186.0 304 44.1
Phvul.003G105800 Phaseolus vulgaris HOM05D007342 ORTHO05D009252 2.3e-44 184.5 629 32.1
Aa31LG10G6280 Aethionema arabicum HOM05D007342 ORTHO05D009252 3.0e-44 184.1 535 31.2
A03p49350 Brassica napus HOM05D007342 ORTHO05D009252 2.0e-43 181.4 525 32.6
Ca_21491_v3 Cicer arietinum L. HOM05D005283 ORTHO05D006769 3.3e-43 180.6 580 30.5
PSO210G2737 Papaver somniferum HOM05D007342 ORTHO05D009252 4.4e-43 180.3 612 31.9
AUR62028039 Chenopodium quinoa HOM05D007342 ORTHO05D009252 9.7e-43 179.1 630 28.9
arahy.Tifrunner.gnm1.ann1.0PW7WM Arachis hypogaea HOM05D007342 ORTHO05D009252 2.2e-42 177.9 616 29.7
AT4G15820 Arabidopsis thaliana HOM05D007342 ORTHO05D009252 8.2e-42 176.0 493 32.3
CARHR290340 Cardamine hirsuta HOM05D007342 ORTHO05D009252 4.1e-41 173.7 531 33.0
unitig_37.g12398 Utricularia gibba HOM05D007342 ORTHO05D009252 1.1e-38 165.6 581 31.2
CsaV3_6G022280 Cucumis sativus L. HOM05D007342 ORTHO05D009252 4.2e-38 163.7 364 35.4
Sed0007886 Sechium edule HOM05D007342 ORTHO05D009252 3.6e-37 160.6 386 38.3
Psat4g027440 Pisum sativum HOM05D007342 ORTHO05D009252 1.8e-36 158.3 581 30.3
PSO832G2203 Papaver somniferum HOM05D007342 ORTHO05D009252 3.0e-36 157.5 471 33.1
TAR633G2120 Trochodendron aralioides HOM05D007342 ORTHO05D009252 4.8e-34 150.2 227 41.0
Oeu045723.1 Olea europaea HOM05D007342 ORTHO05D009252 1.1e-30 139.0 223 38.1
BcaC06g32967 Brassica carinata HOM05D007342 ORTHO05D009252 1.4e-28 132.1 250 38.4
ATR0796G152 Amborella trichopoda HOM05D007342 ORTHO05D009252 2.3e-28 131.3 700 29.9
DCAR_023500 Daucus carota HOM05D007342 ORTHO05D009252 2.0e-27 128.3 347 34.0
MBI18_g13694_MAGBIO Magnolia biondii HOM05D007342 ORTHO05D009252 8.3e-26 122.9 719 25.9
Lalb_Chr07g0177731 Lupinus albus HOM05D007342 ORTHO05D009252 5.9e-24 116.7 116 53.4
Eucgr.L03117 Eucalyptus grandis HOM05D007342 ORTHO05D009252 2.2e-23 114.8 320 34.4
THA.LOC104820268 Tarenaya hassleriana HOM05D007342 ORTHO05D009252 5.0e-23 113.6 105 52.4
MBI18_g13693_MAGBIO Magnolia biondii HOM05D007342 ORTHO05D009252 1.9e-22 111.7 707 25.5
CDE02G3410 Ceratophyllum demersum HOM05D007342 ORTHO05D009252 3.2e-22 110.9 539 27.6
SEGI_31295 Sequoiadendron giganteum HOM05D005676 ORTHO05D007375 2.0e-19 101.7 255 31.0
EL10Ac2g03667 Beta vulgaris HOM05D007342 ORTHO05D009252 1.4e-17 95.5 438 29.0
THA.LOC104810667 Tarenaya hassleriana HOM05D007342 ORTHO05D009252 4.1e-17 94.0 93 50.5
THA.LOC104820435 Tarenaya hassleriana HOM05D007342 ORTHO05D009252 7.0e-17 93.2 93 49.5
HPP92_016942 Vanilla planifolia HOM05D007342 ORTHO05D009252 4.5e-16 90.5 532 24.1
Mapoly0008s0022 Marchantia polymorpha HOM05D005676 ORTHO05D007375 7.7e-16 89.7 114 41.2
AagrBONN_evm.TU.Sc2ySwM_368.2853 Anthoceros agrestis HOM05D005676 ORTHO05D007375 1.2e-13 82.4 134 34.3
Ca_23531_v3 Cicer arietinum L. HOM05D005676 ORTHO05D007375 1.2e-13 82.4 133 34.6
TPR.G16793 Trifolium pratense HOM05D005676 ORTHO05D007375 6.1e-13 80.1 133 34.6
Medtr8g027605 Medicago truncatula HOM05D005676 ORTHO05D007375 8.0e-13 79.7 133 33.1
SEGI_23777 Sequoiadendron giganteum HOM05D005676 ORTHO05D007375 1.4e-12 79.0 98 38.8
Aqoxy7G00081 Aquilegia oxysepala HOM05D005676 ORTHO05D007375 3.0e-12 77.8 127 30.7
Psat4g161440 Pisum sativum HOM05D005676 ORTHO05D007375 4.0e-12 77.4 133 33.1
DCAR_005392 Daucus carota HOM05D005676 ORTHO05D007375 5.2e-12 77.0 129 32.6
Cc02_g39430 Coffea canephora HOM05D005676 ORTHO05D007375 6.8e-12 76.6 133 32.3
HanXRQChr11g0352981 Helianthus annuus HOM05D005676 ORTHO05D007375 6.8e-12 76.6 133 31.6
Pp3c12_1870 Physcomitrium patens HOM05D005676 ORTHO05D007375 6.8e-12 76.6 136 36.0
EL10Ac1g00264 Beta vulgaris HOM05D005676 ORTHO05D007375 8.9e-12 76.3 123 33.3
Lalb_Chr17g0342721 Lupinus albus HOM05D005676 ORTHO05D007375 8.9e-12 76.3 133 31.6
TAR633G1503 Trochodendron aralioides HOM05D007342 ORTHO05D009252 8.9e-12 76.3 190 34.2
Lj3g0008614 Lotus japonicus HOM05D005676 ORTHO05D007375 1.2e-11 75.9 133 32.3
QL04p060782 Quercus lobata HOM05D005676 ORTHO05D007375 2.0e-11 75.1 138 29.7
CDE02G4093 Ceratophyllum demersum HOM05D005676 ORTHO05D007375 3.4e-11 74.3 134 29.1
PGR031G0643 Punica granatum HOM05D005676 ORTHO05D007375 3.4e-11 74.3 128 31.2
SalBow6G4948 Salvia bowleyana HOM05D005676 ORTHO05D007375 3.4e-11 74.3 134 32.8
unitig_899.g14797 Utricularia gibba HOM05D005676 ORTHO05D007375 3.4e-11 74.3 123 30.1
CiPaw.02G041000 Carya illinoinensis HOM05D005676 ORTHO05D007375 4.4e-11 73.9 133 30.1
BcaC06g32966 Brassica carinata HOM05D007342 ORTHO05D009252 7.5e-11 73.2 233 33.0
ClCG05G000790 Citrullus lanatus HOM05D005676 ORTHO05D007375 9.8e-11 72.8 138 31.2
Cfa003798 Carpinus fangiana HOM05D005676 ORTHO05D007375 1.3e-10 72.4 138 29.0
PGSC0003DMG400000228 Solanum tuberosum HOM05D005676 ORTHO05D007375 1.7e-10 72.0 129 31.0
Hma1.2p1_0139F.1_g063260 Hydrangea macrophylla HOM05D005676 ORTHO05D007375 2.2e-10 71.6 117 31.6
Lsat_1_v5_gn_3_140321 Lactuca sativa HOM05D005676 ORTHO05D007375 2.2e-10 71.6 134 28.4
Oeu043238.1 Olea europaea HOM05D005676 ORTHO05D007375 2.2e-10 71.6 108 32.4
Hund16716 Selenicereus undatus HOM05D005676 ORTHO05D007375 2.2e-10 71.6 129 30.2
Eucgr.D02379 Eucalyptus grandis HOM05D005676 ORTHO05D007375 2.8e-10 71.2 153 28.8
Nitab4.5_0000172g0490 Nicotiana tabacum HOM05D005676 ORTHO05D007375 2.8e-10 71.2 134 29.9
Nitab4.5_0013740g0030 Nicotiana tabacum HOM05D005676 ORTHO05D007375 2.8e-10 71.2 134 29.9
MSTRG.17345 Avicennia marina HOM05D005676 ORTHO05D007375 3.7e-10 70.9 110 30.9
ECA246G1832 Erigeron canadensis HOM05D000467 ORTHO05D000379 3.7e-10 70.9 127 30.7
Dinv32595 Davidia involucrata HOM05D005676 ORTHO05D007375 4.9e-10 70.5 123 29.3
Migut.B01876 Erythranthe guttata HOM05D005676 ORTHO05D007375 4.9e-10 70.5 129 30.2
TAR636G2851 Trochodendron aralioides HOM05D005676 ORTHO05D007375 4.9e-10 70.5 128 29.7
CAN.G1415.28 Capsicum annuum HOM05D005676 ORTHO05D007375 6.3e-10 70.1 129 30.2
CSS0030996 Camellia sinensis var. sinensis HOM05D005676 ORTHO05D007375 8.3e-10 69.7 138 28.3
Duzib268G0021 Durio zibethinus HOM05D005676 ORTHO05D007375 1.4e-09 68.9 138 29.7
Lj9A598G65 Lonicera japonica HOM05D005676 ORTHO05D007375 1.4e-09 68.9 116 27.6
Solyc01g096010.4 Solanum lycopersicum HOM05D005676 ORTHO05D007375 1.4e-09 68.9 128 30.5
Sopen01g039730 Solanum pennellii HOM05D005676 ORTHO05D007375 1.4e-09 68.9 129 29.5
Thecc.01G342000 Theobroma cacao HOM05D005676 ORTHO05D007375 1.4e-09 68.9 138 29.7
MBI06_g46583_MAGBIO Magnolia biondii HOM05D005676 ORTHO05D007375 2.4e-09 68.2 128 27.3
Potri.014G099100 Populus trichocarpa HOM05D005676 ORTHO05D007375 4.1e-09 67.4 123 28.5
Actinidia10141 Actinidia chinensis HOM05D005676 ORTHO05D007375 7.0e-09 66.6 128 28.9
Gorai.007G108400 Gossypium raimondii HOM05D005676 ORTHO05D007375 7.0e-09 66.6 139 30.2
Manes.01G246200 Manihot esculenta HOM05D005676 ORTHO05D007375 7.0e-09 66.6 138 27.5
Nn1g00247 Nelumbo nucifera HOM05D005676 ORTHO05D007375 7.0e-09 66.6 123 26.8
GSVIVG01027152001 Vitis vinifera HOM05D005676 ORTHO05D007375 9.2e-09 66.2 128 27.3
Sabra14G0072700 Salix brachista HOM05D005676 ORTHO05D007375 1.2e-08 65.9 133 27.8
Gohir.A11G096900 Gossypium hirsutum HOM05D005676 ORTHO05D007375 2.0e-08 65.1 139 29.5
Ah.11g044170 Amaranthus hybridus HOM05D007342 ORTHO05D009252 3.5e-08 64.3 221 28.5
Haze_15661 Corylus avellana HOM05D005676 ORTHO05D007375 1.7e-07 62.0 138 26.8
Cpa.g.sc96.24 Carica papaya HOM05D005676 ORTHO05D007375 3.9e-07 60.8 106 32.1
CBR_g23443 Chara braunii HOM05D005676 ORTHO05D007375 3.9e-07 60.8 171 28.1
Peaxi162Scf00786g00018 Petunia axillaris HOM05D005676 ORTHO05D007375 6.6e-07 60.1 154 26.0


User provided reference genes

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