Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0019783 Camellia sinensis var. sinensis HOM05D007406 ORTHO05D009434 7.6e-92 340.5 175 100.0
Rhsim06G0065300 Rhododendron simsii HOM05D007406 ORTHO05D009434 8.2e-78 293.9 174 86.2
Actinidia10229 Actinidia chinensis HOM05D007406 ORTHO05D009434 1.1e-77 293.5 167 89.8
Thecc.08G083300 Theobroma cacao HOM05D007406 ORTHO05D009434 1.2e-73 280.0 167 83.2
Lsat_1_v5_gn_1_721 Lactuca sativa HOM05D007406 ORTHO05D009434 1.6e-73 279.6 167 85.6
TWI36G1291 Tripterygium wilfordii HOM05D007406 ORTHO05D009434 7.9e-73 277.3 167 83.8
CiPaw.08G053000 Carya illinoinensis HOM05D007406 ORTHO05D009434 1.4e-72 276.6 167 82.0
Haze_22374 Corylus avellana HOM05D007406 ORTHO05D009434 5.1e-72 274.6 171 80.1
vmacro21408 Vaccinium macrocarpon HOM05D007406 ORTHO05D009434 5.1e-72 274.6 190 77.9
Sabra02G0090500 Salix brachista HOM05D000717 ORTHO05D000555 8.8e-72 273.9 168 82.7
Potri.002G114400 Populus trichocarpa HOM05D007406 ORTHO05D009434 2.0e-71 272.7 167 83.8
Manes.18G050400 Manihot esculenta HOM05D007406 ORTHO05D009434 7.4e-71 270.8 167 81.4
Prupe.1G418200 Prunus persica HOM05D007406 ORTHO05D009434 7.4e-71 270.8 167 82.6
Cfa013727 Carpinus fangiana HOM05D007406 ORTHO05D009434 1.7e-70 269.6 167 81.4
Prupe.6G207800 Prunus persica HOM05D007406 ORTHO05D009434 2.2e-70 269.2 173 79.8
HanXRQChr08g0226371 Helianthus annuus HOM05D007406 ORTHO05D009434 6.3e-70 267.7 167 80.2
TAR628G0119 Trochodendron aralioides HOM05D007406 ORTHO05D009434 6.3e-70 267.7 167 80.2
FvH4_2g32510 Fragaria vesca HOM05D007406 ORTHO05D009434 8.2e-70 267.3 167 79.6
FAN24G2334 Fragaria x ananassa HOM05D007406 ORTHO05D009434 8.2e-70 267.3 167 80.2
MD15G1064200 Malus domestica HOM05D007406 ORTHO05D009434 1.1e-69 266.9 165 82.4
CANSAT25G0188 Cannabis sativa HOM05D007406 ORTHO05D009434 3.1e-69 265.4 167 79.0
RcHm_v2.0_Chr6g0310141 Rosa chinensis HOM05D007406 ORTHO05D009434 3.1e-69 265.4 167 79.6
CsaV3_4G035340 Cucumis sativus L. HOM05D007406 ORTHO05D009434 4.1e-69 265.0 168 80.4
Ciclev10002365m.g Citrus clementina HOM05D007406 ORTHO05D009434 7.0e-69 264.2 167 78.4
Sed0009876 Sechium edule HOM05D007406 ORTHO05D009434 9.1e-69 263.8 167 80.2
MELO3C016844.2 Cucumis melo HOM05D007406 ORTHO05D009434 1.2e-68 263.5 167 80.2
FAN27G1006 Fragaria x ananassa HOM05D007406 ORTHO05D009434 1.2e-68 263.5 167 78.4
Atru.chr13.879 Acer truncatum HOM05D007406 ORTHO05D009434 1.5e-68 263.1 166 78.9
CAN.G416.4 Capsicum annuum HOM05D007406 ORTHO05D009434 2.0e-68 262.7 167 79.6
ClCG05G017610 Citrullus lanatus HOM05D007406 ORTHO05D009434 2.6e-68 262.3 167 80.8
Hma1.2p1_1926F.1_g307730 Hydrangea macrophylla HOM05D007406 ORTHO05D009434 2.6e-68 262.3 168 82.7
Solyc04g077450.3 Solanum lycopersicum HOM05D007406 ORTHO05D009434 2.6e-68 262.3 167 80.2
Duzib041G0608 Durio zibethinus HOM05D007406 ORTHO05D009434 3.5e-68 261.9 167 78.4
Lj4C76T9 Lonicera japonica HOM05D007406 ORTHO05D009434 4.5e-68 261.5 156 85.3
PGR031G1333 Punica granatum HOM05D007406 ORTHO05D009434 4.5e-68 261.5 177 76.8
Sopen04g031040 Solanum pennellii HOM05D007406 ORTHO05D009434 5.9e-68 261.2 167 80.2
DCAR_020070 Daucus carota HOM05D007406 ORTHO05D009434 7.7e-68 260.8 171 78.4
Thhalv10021516m.g Eutrema salsugineum HOM05D007406 ORTHO05D009434 7.7e-68 260.8 167 77.8
Aqoxy6G02928 Aquilegia oxysepala HOM05D007406 ORTHO05D009434 1.0e-67 260.4 167 79.0
Nn6g34540 Nelumbo nucifera HOM05D007406 ORTHO05D009434 1.0e-67 260.4 167 77.8
Gohir.A02G079900 Gossypium hirsutum HOM05D007406 ORTHO05D009434 1.3e-67 260.0 167 76.6
THA.LOC104799833 Tarenaya hassleriana HOM05D007406 ORTHO05D009434 1.3e-67 260.0 167 78.4
BraA05t22509Z Brassica rapa HOM05D007406 ORTHO05D009434 2.9e-67 258.8 167 76.0
Sp3g10440 Schrenkiella parvula HOM05D007406 ORTHO05D009434 3.8e-67 258.5 167 77.2
AL3G23880 Arabidopsis lyrata HOM05D007406 ORTHO05D009434 5.0e-67 258.1 166 77.1
BolC5t34221H Brassica oleracea HOM05D007406 ORTHO05D009434 5.0e-67 258.1 167 75.4
PSO170G2494 Papaver somniferum HOM05D007406 ORTHO05D009434 5.0e-67 258.1 167 76.6
AT3G12210 Arabidopsis thaliana HOM05D007406 ORTHO05D009434 6.5e-67 257.7 167 77.8
Carub.0003s1158 Capsella rubella HOM05D007406 ORTHO05D009434 8.5e-67 257.3 167 76.6
PSO017G2718 Papaver somniferum HOM05D007406 ORTHO05D009434 8.5e-67 257.3 167 76.6
BcaC05g29272 Brassica carinata HOM05D007406 ORTHO05D009434 1.5e-66 256.5 167 74.9
Gohir.D02G087800 Gossypium hirsutum HOM05D007406 ORTHO05D009434 1.5e-66 256.5 167 76.0
Gorai.005G098400 Gossypium raimondii HOM05D007406 ORTHO05D009434 1.5e-66 256.5 167 76.0
ECA247G1434 Erigeron canadensis HOM05D007406 ORTHO05D009434 1.9e-66 256.1 172 76.2
Migut.N02801 Erythranthe guttata HOM05D007406 ORTHO05D009434 1.9e-66 256.1 167 75.4
VMungo0647G2305 Vigna mungo HOM05D007406 ORTHO05D009434 5.5e-66 254.6 171 75.4
Cc10_g07740 Coffea canephora HOM05D007406 ORTHO05D009434 7.2e-66 254.2 166 75.9
Cpa.g.sc160.29 Carica papaya HOM05D007406 ORTHO05D009434 9.4e-66 253.8 167 75.4
Lalb_Chr14g0368031 Lupinus albus HOM05D007406 ORTHO05D009434 9.4e-66 253.8 170 77.1
Phvul.001G031500 Phaseolus vulgaris HOM05D007406 ORTHO05D009434 1.6e-65 253.1 175 73.7
TPR.G13149 Trifolium pratense HOM05D007406 ORTHO05D009434 2.1e-65 252.7 171 75.4
COL.COLO4_28451 Corchorus olitorius HOM05D007406 ORTHO05D009434 2.7e-65 252.3 194 67.0
Medtr1g017290 Medicago truncatula HOM05D007406 ORTHO05D009434 8.0e-65 250.8 171 74.3
Oeu053653.1 Olea europaea HOM05D007406 ORTHO05D009434 8.0e-65 250.8 167 73.7
ATR0739G008 Amborella trichopoda HOM05D007406 ORTHO05D009434 1.4e-64 250.0 167 73.7
Ca_06987_v3 Cicer arietinum L. HOM05D007406 ORTHO05D009434 3.0e-64 248.8 171 73.7
Glyma.14G090300 Glycine max HOM05D007406 ORTHO05D009434 8.8e-64 247.3 171 75.4
Aa31LG11G6470 Aethionema arabicum HOM05D007406 ORTHO05D009434 1.5e-63 246.5 167 74.3
arahy.Tifrunner.gnm1.ann1.GL3N7R Arachis hypogaea HOM05D007406 ORTHO05D009434 5.7e-63 244.6 171 71.9
MSTRG.22203 Avicennia marina HOM05D007406 ORTHO05D009434 7.4e-63 244.2 167 72.5
Lj5g0009058 Lotus japonicus HOM05D007406 ORTHO05D009434 1.3e-62 243.4 171 73.7
arahy.Tifrunner.gnm1.ann1.V0H9ZK Arachis hypogaea HOM05D007406 ORTHO05D009434 4.1e-61 238.4 169 70.4
SalBow2G1084 Salvia bowleyana HOM05D007406 ORTHO05D009434 5.3e-61 238.0 167 70.1
Eucgr.F02216 Eucalyptus grandis HOM05D007406 ORTHO05D009434 1.2e-60 236.9 167 72.5
Ah.05g166920 Amaranthus hybridus HOM05D007406 ORTHO05D009434 7.7e-60 234.2 170 72.9
Hund05268 Selenicereus undatus HOM05D007406 ORTHO05D009434 7.7e-60 234.2 167 73.1
AUR62034986 Chenopodium quinoa HOM05D007406 ORTHO05D009434 3.8e-59 231.9 170 72.4
Nitab4.5_0007871g0020 Nicotiana tabacum HOM05D007406 ORTHO05D009434 2.1e-57 226.1 167 72.5
SGA_v2.0_scaffold28G11843 Striga asiatica HOM05D007406 ORTHO05D009434 2.1e-57 226.1 167 67.7
EL10Ac1g02342 Beta vulgaris HOM05D007406 ORTHO05D009434 8.0e-57 224.2 166 71.1
Zm00001eb215640 Zea mays HOM05D007406 ORTHO05D009434 1.0e-56 223.8 165 66.1
MBI16_g35726_MAGBIO Magnolia biondii HOM05D007406 ORTHO05D009434 1.4e-56 223.4 183 62.3
CARHR086780 Cardamine hirsuta HOM05D007406 ORTHO05D009434 2.0e-55 219.5 138 76.8
CDE04G3630 Ceratophyllum demersum HOM05D007406 ORTHO05D009434 2.0e-52 209.5 141 73.8
SEGI_23576 Sequoiadendron giganteum HOM05D007406 ORTHO05D009434 1.0e-48 197.2 167 60.5
Pp3c10_2700 Physcomitrium patens HOM05D007406 ORTHO05D009434 2.0e-47 193.0 166 56.0
GSVIVG01009288001 Vitis vinifera HOM05D007406 ORTHO05D009434 2.6e-47 192.6 105 93.3
Peaxi162Scf01161g00328 Petunia axillaris HOM05D007406 ORTHO05D009434 2.2e-46 189.5 167 61.1
Sc15g0005330 Simmondsia chinensis HOM05D007406 ORTHO05D009434 3.5e-44 182.2 136 68.4
AUR62039350 Chenopodium quinoa HOM05D007406 ORTHO05D009434 1.4e-37 160.2 106 79.2
A05p37120 Brassica napus HOM05D007406 ORTHO05D004372 2.0e-36 156.4 96 83.3
C05p55550 Brassica napus HOM05D007406 ORTHO05D004372 2.0e-36 156.4 96 83.3
Nitab4.5_0001494g0090 Nicotiana tabacum HOM05D007406 ORTHO05D009434 1.2e-31 140.6 167 50.3
Aa31sc118G30 Aethionema arabicum HOM05D007406 ORTHO05D009434 1.4e-29 133.7 95 73.7
Hma1.2p1_1926F.1_g307740 Hydrangea macrophylla HOM05D007406 ORTHO05D009434 1.9e-29 133.3 79 87.3
Hma1.2p1_2378F.1_g320925 Hydrangea macrophylla HOM05D007406 ORTHO05D009434 1.9e-29 133.3 79 87.3
Psat0s3650g0120 Pisum sativum HOM05D007406 ORTHO05D009434 7.8e-20 101.3 59 79.7
MCO14G094 Micromonas commoda HOM05D007406 ORTHO05D009434 3.3e-18 95.9 166 38.0
PRCOL_00000641 Prasinoderma coloniale HOM05D007406 ORTHO05D009434 3.7e-14 82.4 142 41.5
Cre10.g466400 Chlamydomonas reinhardtii HOM05D007406 ORTHO05D009434 1.1e-13 80.9 155 36.8
Os03g0728600 Oryza sativa ssp. japonica HOM05D007406 ORTHO05D009434 7.1e-13 78.2 73 45.2
Dinv39200 Davidia involucrata HOM05D007406 ORTHO05D009434 3.6e-09 65.9 34 91.2
Aa31LG6G10720 Aethionema arabicum HOM05D004815 ORTHO05D005742 2.2e-06 56.6 42 64.3


User provided reference genes

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