Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0019779 Camellia sinensis var. sinensis HOM05D003740 ORTHO05D004611 2.3e-230 802.0 430 100.0
Actinidia39193 Actinidia chinensis HOM05D003740 ORTHO05D004611 1.9e-205 719.2 395 90.9
Rhsim03G0031000 Rhododendron simsii HOM05D003740 ORTHO05D004611 1.1e-203 713.4 392 90.3
Actinidia38142 Actinidia chinensis HOM05D003740 ORTHO05D004611 3.1e-203 711.8 397 90.2
Dinv34246 Davidia involucrata HOM05D003740 ORTHO05D004611 3.1e-203 711.8 396 89.4
Dinv05312 Davidia involucrata HOM05D003740 ORTHO05D004611 1.9e-200 702.6 397 88.4
Rhsim04G0107900 Rhododendron simsii HOM05D003740 ORTHO05D004611 4.5e-194 681.4 386 89.6
Peaxi162Scf00130g01015 Petunia axillaris HOM05D003740 ORTHO05D004611 2.9e-193 678.7 395 84.6
GSVIVG01033552001 Vitis vinifera HOM05D003740 ORTHO05D004611 3.8e-193 678.3 389 86.4
FAN09G1292 Fragaria x ananassa HOM05D003740 ORTHO05D004611 5.0e-193 677.9 393 85.2
FAN05G1357 Fragaria x ananassa HOM05D003740 ORTHO05D004611 1.1e-192 676.8 393 85.0
RcHm_v2.0_Chr3g0484361 Rosa chinensis HOM05D003740 ORTHO05D004611 2.5e-192 675.6 394 84.5
HanXRQChr10g0277771 Helianthus annuus HOM05D003740 ORTHO05D004611 3.2e-192 675.2 396 84.3
MD12G1086200 Malus domestica HOM05D003740 ORTHO05D004611 3.2e-192 675.2 395 84.6
Prupe.7G050100 Prunus persica HOM05D003740 ORTHO05D004611 9.4e-192 673.7 392 84.4
FvH4_6g24760 Fragaria vesca HOM05D003740 ORTHO05D004611 2.1e-191 672.5 393 84.7
MD14G1080600 Malus domestica HOM05D003740 ORTHO05D004611 1.4e-190 669.8 396 84.1
PGR004G2716 Punica granatum HOM05D003740 ORTHO05D004611 2.3e-190 669.1 385 85.7
Sopen04g008590 Solanum pennellii HOM05D003740 ORTHO05D004611 3.9e-190 668.3 397 82.6
FAN02G1973 Fragaria x ananassa HOM05D003740 ORTHO05D004611 8.8e-190 667.2 410 81.7
Prupe.1G032300 Prunus persica HOM05D003740 ORTHO05D004611 1.5e-189 666.4 392 83.4
MSTRG.26143 Avicennia marina HOM05D003740 ORTHO05D004611 2.5e-189 665.6 391 83.4
VMungo0720G0943 Vigna mungo HOM05D003740 ORTHO05D004611 5.7e-189 664.5 393 84.5
Ca_25790_v3 Cicer arietinum L. HOM05D003740 ORTHO05D004611 9.7e-189 663.7 392 84.4
Ciclev10005020m.g Citrus clementina HOM05D003740 ORTHO05D004611 9.7e-189 663.7 393 83.0
TWI53G1619 Tripterygium wilfordii HOM05D003740 ORTHO05D004611 1.7e-188 662.9 392 83.7
Lj5g0015883 Lotus japonicus HOM05D003740 ORTHO05D004611 3.7e-188 661.8 392 83.4
CSS0009879 Camellia sinensis var. sinensis HOM05D003740 ORTHO05D004611 4.8e-188 661.4 393 86.3
Migut.K00119 Erythranthe guttata HOM05D003740 ORTHO05D004611 6.3e-188 661.0 396 83.1
Glyma.02G190700 Glycine max HOM05D003740 ORTHO05D004611 6.3e-188 661.0 430 79.5
MELO3C014202.2 Cucumis melo HOM05D003740 ORTHO05D004611 1.4e-187 659.8 392 83.4
CsaV3_4G027630 Cucumis sativus L. HOM05D003740 ORTHO05D004611 1.4e-187 659.8 392 83.4
ClCG04G004010 Citrullus lanatus HOM05D003740 ORTHO05D004611 1.8e-187 659.4 392 83.4
Eucgr.A02296 Eucalyptus grandis HOM05D003740 ORTHO05D004611 1.8e-187 659.4 392 81.9
TWI74G0940 Tripterygium wilfordii HOM05D003740 ORTHO05D004611 1.8e-187 659.4 430 77.2
Migut.J01706 Erythranthe guttata HOM05D003740 ORTHO05D004611 2.4e-187 659.1 392 83.7
Sed0006234 Sechium edule HOM05D003740 ORTHO05D004611 3.1e-187 658.7 395 82.5
Medtr3g045150 Medicago truncatula HOM05D003740 ORTHO05D004611 4.1e-187 658.3 392 83.2
TPR.G19664 Trifolium pratense HOM05D003740 ORTHO05D004611 4.1e-187 658.3 392 83.9
Glyma.10G105900 Glycine max HOM05D003740 ORTHO05D004611 1.2e-186 656.8 389 83.8
Medtr0012s0090 Medicago truncatula HOM05D003740 ORTHO05D004611 1.2e-186 656.8 392 83.2
Phvul.007G249500 Phaseolus vulgaris HOM05D003740 ORTHO05D004611 1.2e-186 656.8 393 84.2
Manes.08G053600 Manihot esculenta HOM05D003740 ORTHO05D004611 1.5e-186 656.4 394 81.0
Sed0013360 Sechium edule HOM05D003740 ORTHO05D004611 2.0e-186 656.0 395 82.8
MSTRG.10801 Avicennia marina HOM05D003740 ORTHO05D004611 2.6e-186 655.6 389 82.8
RcHm_v2.0_Chr3g0484511 Rosa chinensis HOM05D003740 ORTHO05D004611 2.6e-186 655.6 394 83.0
Psat6g118200 Pisum sativum HOM05D003740 ORTHO05D004611 4.5e-186 654.8 392 83.2
Cfa016754 Carpinus fangiana HOM05D003740 ORTHO05D004611 1.0e-185 653.7 397 82.1
QL07p005086 Quercus lobata HOM05D003740 ORTHO05D004611 1.7e-185 652.9 392 82.4
TWI77G0796 Tripterygium wilfordii HOM05D003740 ORTHO05D004611 2.9e-185 652.1 392 82.1
Oeu006922.2 Olea europaea HOM05D003740 ORTHO05D004611 6.5e-185 651.0 394 83.0
Thecc.05G145300 Theobroma cacao HOM05D003740 ORTHO05D004611 6.5e-185 651.0 396 81.3
Haze_19750 Corylus avellana HOM05D003740 ORTHO05D004611 1.4e-184 649.8 397 81.9
Gohir.D09G116000 Gossypium hirsutum HOM05D003740 ORTHO05D004611 5.5e-184 647.9 396 80.8
Gohir.A09G119800 Gossypium hirsutum HOM05D003740 ORTHO05D004611 9.4e-184 647.1 396 80.6
arahy.Tifrunner.gnm1.ann1.0DR8LC Arachis hypogaea HOM05D003740 ORTHO05D004611 1.6e-183 646.4 392 82.1
Atru.chr6.1381 Acer truncatum HOM05D003740 ORTHO05D004611 4.7e-183 644.8 392 82.4
Lalb_Chr02g0156411 Lupinus albus HOM05D003740 ORTHO05D004611 4.7e-183 644.8 397 81.4
Lalb_Chr21g0316601 Lupinus albus HOM05D003740 ORTHO05D004611 4.7e-183 644.8 396 80.8
CiPaw.09G042200 Carya illinoinensis HOM05D003740 ORTHO05D004611 7.9e-183 644.0 399 82.0
Solyc04g016520.3 Solanum lycopersicum HOM05D003740 ORTHO05D004611 1.4e-182 643.3 397 80.1
arahy.Tifrunner.gnm1.ann1.G7Z7YE Arachis hypogaea HOM05D003740 ORTHO05D004611 2.3e-182 642.5 393 81.9
unitig_748.g7227 Utricularia gibba HOM05D003740 ORTHO05D004611 8.8e-182 640.6 396 80.8
Nn6g34910 Nelumbo nucifera HOM05D003740 ORTHO05D004611 1.1e-181 640.2 392 80.9
FAN14G5242 Fragaria x ananassa HOM05D003740 ORTHO05D004611 1.5e-181 639.8 373 85.0
Gorai.006G134300 Gossypium raimondii HOM05D003740 ORTHO05D004611 1.5e-181 639.8 389 81.5
PGSC0003DMG400012722 Solanum tuberosum HOM05D003740 ORTHO05D004611 3.3e-181 638.6 395 80.3
TAR636G0750 Trochodendron aralioides HOM05D003740 ORTHO05D004611 7.4e-181 637.5 412 79.1
Ah.13g076780 Amaranthus hybridus HOM05D003740 ORTHO05D004611 1.3e-180 636.7 399 80.2
DCAR_020539 Daucus carota HOM05D003740 ORTHO05D004611 3.7e-180 635.2 378 83.9
EL10Ac3g07158 Beta vulgaris HOM05D003740 ORTHO05D004611 8.2e-180 634.0 431 75.4
Nn7g37216 Nelumbo nucifera HOM05D003740 ORTHO05D004611 1.8e-179 632.9 392 80.4
SGA_v2.0_scaffold105G30359 Striga asiatica HOM05D003740 ORTHO05D004611 3.1e-179 632.1 410 78.3
THA.LOC104816968 Tarenaya hassleriana HOM05D003740 ORTHO05D004611 7.0e-179 630.9 385 80.8
Sabra16G0047800 Salix brachista HOM05D003740 ORTHO05D004611 4.5e-178 628.2 392 79.1
ECA233G5682 Erigeron canadensis HOM05D003740 ORTHO05D004611 7.7e-178 627.5 426 76.3
Lsat_1_v5_gn_6_15201 Lactuca sativa HOM05D003740 ORTHO05D004611 8.5e-177 624.0 376 83.0
THA.LOC104803288 Tarenaya hassleriana HOM05D003740 ORTHO05D004611 8.5e-177 624.0 385 80.5
C04p02750 Brassica napus HOM05D003740 ORTHO05D004611 1.1e-176 623.6 397 79.1
Potri.006G045700 Populus trichocarpa HOM05D003740 ORTHO05D004611 2.5e-176 622.5 392 77.8
BraA05t19226Z Brassica rapa HOM05D003740 ORTHO05D004611 4.2e-176 621.7 397 78.6
BcaNung06793 Brassica carinata HOM05D003740 ORTHO05D004611 5.5e-176 621.3 385 80.8
A05p02310 Brassica napus HOM05D003740 ORTHO05D004611 5.5e-176 621.3 385 80.5
BolC4t21915H Brassica oleracea HOM05D003740 ORTHO05D004611 5.5e-176 621.3 397 78.8
Cc06_g18360 Coffea canephora HOM05D003740 ORTHO05D004611 5.5e-176 621.3 392 80.4
Atru.chr1.1193 Acer truncatum HOM05D003740 ORTHO05D004611 7.2e-176 620.9 374 83.7
PSO384G1999 Papaver somniferum HOM05D003740 ORTHO05D004611 6.1e-175 617.8 385 80.0
Sp4g23760 Schrenkiella parvula HOM05D003740 ORTHO05D004611 2.3e-174 615.9 389 79.4
AT2G41490 Arabidopsis thaliana HOM05D003740 ORTHO05D004611 5.2e-174 614.8 397 77.6
Duzib128G1723 Durio zibethinus HOM05D003740 ORTHO05D004611 5.2e-174 614.8 376 81.1
PSO339G5696 Papaver somniferum HOM05D003740 ORTHO05D004611 5.2e-174 614.8 385 79.5
Thhalv10016688m.g Eutrema salsugineum HOM05D003740 ORTHO05D004611 8.8e-174 614.0 432 73.4
AL4G39580 Arabidopsis lyrata HOM05D003740 ORTHO05D004611 1.5e-173 613.2 397 77.6
Lj1A1122T44 Lonicera japonica HOM05D003740 ORTHO05D004611 2.0e-173 612.8 431 74.0
BcaB02g08329 Brassica carinata HOM05D003740 ORTHO05D004611 3.3e-173 612.1 396 77.8
AL5G38710 Arabidopsis lyrata HOM05D003740 ORTHO05D004611 7.4e-173 610.9 389 78.7
BcaC02g09904 Brassica carinata HOM05D003740 ORTHO05D004611 7.4e-173 610.9 389 78.4
C04p35340 Brassica napus HOM05D003740 ORTHO05D004611 7.4e-173 610.9 389 78.4
BolC4t25088H Brassica oleracea HOM05D003740 ORTHO05D004611 7.4e-173 610.9 389 78.4
AUR62024529 Chenopodium quinoa HOM05D003740 ORTHO05D004611 1.3e-172 610.1 390 78.7
Thhalv10007732m.g Eutrema salsugineum HOM05D003740 ORTHO05D004611 1.3e-172 610.1 389 78.9
CARHR136610 Cardamine hirsuta HOM05D003740 ORTHO05D004611 1.7e-172 609.8 389 78.4
A09p50150 Brassica napus HOM05D003740 ORTHO05D004611 2.8e-172 609.0 389 78.7
C08p32520 Brassica napus HOM05D003740 ORTHO05D004611 2.8e-172 609.0 389 78.4
BraA09t40467Z Brassica rapa HOM05D003740 ORTHO05D004611 2.8e-172 609.0 389 78.7
BraA04t16052Z Brassica rapa HOM05D003740 ORTHO05D004611 4.8e-172 608.2 396 77.5
Thhalv10005999m.g Eutrema salsugineum HOM05D003740 ORTHO05D004611 6.3e-172 607.8 389 78.7
BolC8t50867H Brassica oleracea HOM05D003740 ORTHO05D004611 8.2e-172 607.4 389 78.1
AUR62026121 Chenopodium quinoa HOM05D003740 ORTHO05D004611 8.2e-172 607.4 389 79.4
Carub.0004s2379 Capsella rubella HOM05D003740 ORTHO05D004611 1.1e-171 607.1 389 78.1
AT3G57220 Arabidopsis thaliana HOM05D003740 ORTHO05D004611 1.8e-171 606.3 389 77.9
SEGI_04340 Sequoiadendron giganteum HOM05D003740 ORTHO05D004611 3.1e-171 605.5 392 77.0
Carub.0005s2403 Capsella rubella HOM05D003740 ORTHO05D004611 9.1e-171 604.0 389 78.1
CAN.G1237.3 Capsicum annuum HOM05D003740 ORTHO05D004611 9.1e-171 604.0 335 88.1
Sc13g0001500 Simmondsia chinensis HOM05D003740 ORTHO05D004611 1.2e-170 603.6 379 79.2
Lj2A390G27 Lonicera japonica HOM05D003740 ORTHO05D004611 1.6e-170 603.2 372 82.5
CANSAT80G1617 Cannabis sativa HOM05D003740 ORTHO05D004611 7.7e-170 600.9 371 79.2
Aa31LG1G23510 Aethionema arabicum HOM05D003740 ORTHO05D004611 3.2e-168 595.5 389 76.6
Aqoxy2G02041 Aquilegia oxysepala HOM05D003740 ORTHO05D004611 9.4e-168 594.0 430 71.2
CDE08G1337 Ceratophyllum demersum HOM05D003740 ORTHO05D004611 9.4e-168 594.0 360 82.2
CANSAT80G1359 Cannabis sativa HOM05D003740 ORTHO05D004611 1.2e-167 593.6 367 79.3
Potri.016G042100 Populus trichocarpa HOM05D003740 ORTHO05D004611 6.1e-167 591.3 380 77.6
TPR.G2316 Trifolium pratense HOM05D003740 ORTHO05D004611 3.0e-166 589.0 392 76.3
MBI13_g04792_MAGBIO Magnolia biondii HOM05D003740 ORTHO05D004611 8.8e-166 587.4 369 79.4
SalBow1G2954 Salvia bowleyana HOM05D003740 ORTHO05D004611 1.5e-165 586.6 425 72.7
Aa31LG10G12120 Aethionema arabicum HOM05D003740 ORTHO05D004611 9.7e-165 583.9 437 69.8
Duzib106G0923 Durio zibethinus HOM05D003740 ORTHO05D004611 3.1e-163 578.9 395 75.2
Nitab4.5_0000826g0260 Nicotiana tabacum HOM05D003740 ORTHO05D004611 1.0e-161 573.9 402 73.9
A04p03820 Brassica napus HOM05D003740 ORTHO05D004611 7.2e-160 567.8 396 73.2
COL.COLO4_21300 Corchorus olitorius HOM05D003740 ORTHO05D004611 6.1e-159 564.7 379 75.5
TAR633G2274 Trochodendron aralioides HOM05D003740 ORTHO05D004611 4.8e-156 555.1 320 86.2
Os07g0661100 Oryza sativa ssp. japonica HOM05D003740 ORTHO05D004611 5.4e-155 551.6 374 72.2
BcaC07g40064 Brassica carinata HOM05D003740 ORTHO05D004611 3.3e-152 542.3 322 82.9
Zm00001eb110840 Zea mays HOM05D003740 ORTHO05D004611 1.0e-150 537.3 377 71.1
Zm00001eb329870 Zea mays HOM05D003740 ORTHO05D004611 5.2e-150 535.0 375 71.5
Hund19125 Selenicereus undatus HOM05D003740 ORTHO05D004611 2.6e-149 532.7 409 70.9
DCAR_016970 Daucus carota HOM05D003740 ORTHO05D004611 1.0e-145 520.8 382 71.5
SMO364G0515 Selaginella moellendorffii HOM05D003740 ORTHO05D004611 1.3e-145 520.4 395 68.1
RcHm_v2.0_Chr3g0484421 Rosa chinensis HOM05D003740 ORTHO05D004611 1.7e-145 520.0 416 68.0
ATR0782G053 Amborella trichopoda HOM05D003740 ORTHO05D004611 2.3e-145 519.6 329 78.4
Pp3c2_18380 Physcomitrium patens HOM05D003740 ORTHO05D004611 8.6e-145 517.7 400 67.2
Mapoly0120s0027 Marchantia polymorpha HOM05D003740 ORTHO05D004611 2.7e-138 496.1 399 61.9
Medtr8g446850 Medicago truncatula HOM05D003740 ORTHO05D004611 4.3e-136 488.8 338 75.1
TPR.G11551 Trifolium pratense HOM05D003740 ORTHO05D004611 8.3e-132 474.6 399 65.9
AagrBONN_evm.TU.Sc2ySwM_344.2027 Anthoceros agrestis HOM05D003740 ORTHO05D004611 3.5e-130 469.2 401 61.1
AUR62004393 Chenopodium quinoa HOM05D003740 ORTHO05D004611 1.4e-126 457.2 370 65.4
CARHR167400 Cardamine hirsuta HOM05D003740 ORTHO05D004611 1.8e-126 456.8 294 78.9
vmacro09044 Vaccinium macrocarpon HOM05D003740 ORTHO05D004611 1.2e-125 454.1 241 92.9
SHI12878 Sapria himalayana HOM05D003740 ORTHO05D004611 4.4e-125 452.2 392 59.9
AUR62022599 Chenopodium quinoa HOM05D003740 ORTHO05D004611 8.7e-113 411.4 335 64.2
SMO112G0012 Selaginella moellendorffii HOM05D003740 ORTHO05D004611 4.0e-110 402.5 271 74.9
Sp5g05360 Schrenkiella parvula HOM05D003740 ORTHO05D004611 1.5e-104 384.0 231 81.0
CiPaw.10G036600 Carya illinoinensis HOM05D003740 ORTHO05D004611 2.4e-99 366.7 211 87.7
AagrBONN_evm.TU.Sc2ySwM_368.1663 Anthoceros agrestis HOM05D003740 ORTHO05D004611 2.6e-93 346.7 406 47.8
Cre16.g663100 Chlamydomonas reinhardtii HOM05D003740 ORTHO05D004611 2.6e-93 346.7 419 48.2
PRCOL_00006546 Prasinoderma coloniale HOM05D003740 ORTHO05D004611 3.9e-89 332.8 391 49.4
SEGI_25729 Sequoiadendron giganteum HOM05D003740 ORTHO05D004611 2.5e-83 313.5 196 77.0
CBR_g48687 Chara braunii HOM05D003740 ORTHO05D004611 3.2e-83 313.2 273 57.1
SGA_v2.0_scaffold69G23130 Striga asiatica HOM05D003740 ORTHO05D004611 1.6e-82 310.8 356 52.5
Cpa.g.sc120.7 Carica papaya HOM05D003740 ORTHO05D004611 3.1e-70 270.0 151 84.8
Actinidia17677 Actinidia chinensis HOM05D003740 ORTHO05D004611 3.6e-66 256.5 431 42.0
Aqoxy6G01654 Aquilegia oxysepala HOM05D003740 ORTHO05D004611 7.4e-64 248.8 222 60.8
Haze_26500 Corylus avellana HOM05D003740 ORTHO05D004611 8.2e-63 245.4 304 45.1
MCO05G206 Micromonas commoda HOM05D003740 ORTHO05D004611 9.1e-62 241.9 302 46.4
Cfa024885 Carpinus fangiana HOM05D003740 ORTHO05D004611 5.7e-56 222.6 304 42.4
HPP92_001282 Vanilla planifolia HOM05D003740 ORTHO05D004611 1.4e-54 218.0 219 53.9
Psat6g050760 Pisum sativum HOM05D003740 ORTHO05D018044 2.5e-51 207.2 120 81.7
AagrBONN_evm.TU.Sc2ySwM_117.4057 Anthoceros agrestis HOM05D003740 ORTHO05D004611 1.7e-47 194.5 183 57.4
vmacro09045 Vaccinium macrocarpon HOM05D003740 ORTHO05D004611 4.0e-33 146.7 75 94.7
Cpa.g.c37387 Carica papaya HOM05D003740 ORTHO05D004611 7.0e-30 136.0 100 67.0
MBI05_g15360_MAGBIO Magnolia biondii HOM05D003740 ORTHO05D004611 1.8e-25 121.3 69 84.1
TPR.G13517 Trifolium pratense HOM05D003740 ORTHO05D027079 1.3e-23 115.2 88 65.9
SMO112G0048 Selaginella moellendorffii HOM05D003740 ORTHO05D004611 8.6e-20 102.4 75 66.7
Nitab4.5_0001618g0330 Nicotiana tabacum HOM05D003740 ORTHO05D004611 3.3e-19 100.5 54 81.5
Psat6g009800 Pisum sativum HOM05D003740 ORTHO05D004611 2.1e-18 97.8 61 73.8
BNapus_Darmor_BZH_scaffold_38p00040 Brassica napus HOM05D003740 ORTHO05D027079 2.2e-15 87.8 87 54.0
BcaC09g48688 Brassica carinata HOM05D003740 ORTHO05D027079 6.4e-15 86.3 115 44.3
BcaC02g11255 Brassica carinata HOM05D003740 ORTHO05D015230 8.3e-15 85.9 55 72.7
TPR.G40499 Trifolium pratense HOM05D003740 ORTHO05D004611 1.6e-13 81.6 60 68.3
Pp3c1_19750 Physcomitrium patens HOM05D003740 ORTHO05D004611 2.3e-12 77.8 123 41.5
TPR.G2297 Trifolium pratense HOM05D003740 ORTHO05D411092 2.0e-08 64.7 141 36.2
A03p42520 Brassica napus HOM05D024621 ORTHO05D015230 1.9e-06 58.2 55 54.5


User provided reference genes

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