Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0019774 Camellia sinensis var. sinensis HOM05D004651 ORTHO05D005761 9.3e-65 250.0 120 100.0
CSS0028305 Camellia sinensis var. sinensis HOM05D004651 ORTHO05D005761 9.3e-65 250.0 120 100.0
Dinv24113 Davidia involucrata HOM05D004651 ORTHO05D005761 6.0e-56 220.7 116 88.8
Dinv18101 Davidia involucrata HOM05D000001 ORTHO05D000003 9.7e-54 213.4 118 86.4
Hma1.2p1_0856F.1_g229150 Hydrangea macrophylla HOM05D004651 ORTHO05D005761 1.6e-53 212.6 116 83.6
Cc06_g16440 Coffea canephora HOM05D004651 ORTHO05D005761 1.1e-52 209.9 115 84.3
Rhsim03G0011100 Rhododendron simsii HOM05D004651 ORTHO05D005761 9.0e-52 206.8 120 80.0
Oeu033769.1 Olea europaea HOM05D004651 ORTHO05D005761 3.4e-51 204.9 105 89.5
Sed0027459 Sechium edule HOM05D004651 ORTHO05D005761 1.0e-50 203.4 121 81.0
DCAR_013570 Daucus carota HOM05D004651 ORTHO05D005761 6.5e-50 200.7 120 83.3
Lsat_1_v5_gn_9_27580 Lactuca sativa HOM05D004651 ORTHO05D005761 1.4e-49 199.5 120 80.0
Nn2g15489 Nelumbo nucifera HOM05D004651 ORTHO05D005761 3.2e-49 198.4 117 78.6
TAR623G0603 Trochodendron aralioides HOM05D004651 ORTHO05D005761 5.5e-49 197.6 121 79.3
ClCG04G000490 Citrullus lanatus HOM05D004651 ORTHO05D005761 9.4e-49 196.8 121 77.7
Actinidia38568 Actinidia chinensis HOM05D004651 ORTHO05D005761 1.2e-48 196.4 120 79.2
HanXRQChr10g0294281 Helianthus annuus HOM05D004651 ORTHO05D005761 3.6e-48 194.9 117 76.1
Ah.04g152020 Amaranthus hybridus HOM05D004651 ORTHO05D005761 4.6e-48 194.5 107 84.1
Sabra06G0040200 Salix brachista HOM05D004651 ORTHO05D005761 1.0e-47 193.4 111 80.2
Manes.09G030500 Manihot esculenta HOM05D004651 ORTHO05D005761 1.4e-47 193.0 116 77.6
SGA_v2.0_scaffold105G30461 Striga asiatica HOM05D004651 ORTHO05D005761 3.0e-47 191.8 103 84.5
GSVIVG01033348001 Vitis vinifera HOM05D000001 ORTHO05D000003 5.1e-47 191.0 107 79.4
Migut.J01795 Erythranthe guttata HOM05D004651 ORTHO05D005761 6.7e-47 190.7 116 77.6
MSTRG.6460 Avicennia marina HOM05D004651 ORTHO05D005761 8.8e-47 190.3 107 80.4
Sc19g0006860 Simmondsia chinensis HOM05D004651 ORTHO05D005761 1.1e-46 189.9 119 77.3
EL10Ac3g06986 Beta vulgaris HOM05D004651 ORTHO05D005761 1.5e-46 189.5 117 79.5
CDE05G0104 Ceratophyllum demersum HOM05D004651 ORTHO05D005761 1.3e-45 186.4 120 77.5
Lsat_1_v5_gn_5_163881 Lactuca sativa HOM05D006723 ORTHO05D008194 1.3e-45 186.4 121 75.2
Ah.13g076160 Amaranthus hybridus HOM05D004651 ORTHO05D005761 1.7e-45 186.0 118 77.1
Glyma.02G174400 Glycine max HOM05D004651 ORTHO05D005761 1.7e-45 186.0 118 70.3
Nitab4.5_0000603g0080 Nicotiana tabacum HOM05D004651 ORTHO05D005761 2.8e-45 185.3 109 78.0
Aqoxy2G00117 Aquilegia oxysepala HOM05D004651 ORTHO05D005761 3.7e-45 184.9 116 75.0
Phvul.007G256600 Phaseolus vulgaris HOM05D004651 ORTHO05D005761 3.7e-45 184.9 120 73.3
Sabra16G0055100 Salix brachista HOM05D004651 ORTHO05D005761 4.8e-45 184.5 114 74.6
Potri.016G051400 Populus trichocarpa HOM05D004651 ORTHO05D005761 6.3e-45 184.1 111 75.7
Glyma.10G093900 Glycine max HOM05D004651 ORTHO05D005761 8.2e-45 183.7 107 76.6
SGA_v2.0_scaffold94G28447 Striga asiatica HOM05D004651 ORTHO05D005761 8.2e-45 183.7 120 73.3
HPP92_022788 Vanilla planifolia HOM05D004651 ORTHO05D005761 1.4e-44 183.0 122 70.5
arahy.Tifrunner.gnm1.ann1.F3K4LC Arachis hypogaea HOM05D005399 ORTHO05D006347 1.8e-44 182.6 107 76.6
AUR62025977 Chenopodium quinoa HOM05D004651 ORTHO05D005761 2.4e-44 182.2 109 78.9
AUR62024379 Chenopodium quinoa HOM05D004651 ORTHO05D005761 3.1e-44 181.8 120 75.0
MD14G1064400 Malus domestica HOM05D004651 ORTHO05D005761 3.1e-44 181.8 109 78.9
FvH4_6g22990 Fragaria vesca HOM05D004651 ORTHO05D005761 6.9e-44 180.6 104 78.8
FAN05G1131 Fragaria x ananassa HOM05D004651 ORTHO05D005761 6.9e-44 180.6 104 78.8
FAN09G0537 Fragaria x ananassa HOM05D004651 ORTHO05D005761 9.1e-44 180.3 104 78.8
Potri.006G056900 Populus trichocarpa HOM05D004651 ORTHO05D005761 1.5e-43 179.5 111 76.6
CANSAT80G2258 Cannabis sativa HOM05D004651 ORTHO05D005761 2.6e-43 178.7 109 78.0
CDE05G0718 Ceratophyllum demersum HOM05D004651 ORTHO05D005761 2.6e-43 178.7 120 74.2
Manes.08G047600 Manihot esculenta HOM05D004651 ORTHO05D005761 2.6e-43 178.7 116 75.0
Peaxi162Scf00406g00069 Petunia axillaris HOM05D004651 ORTHO05D005761 2.6e-43 178.7 109 75.2
MBI01_g38800_MAGBIO Magnolia biondii HOM05D004651 ORTHO05D005761 3.4e-43 178.3 97 82.5
MD12G1064300 Malus domestica HOM05D004651 ORTHO05D005761 3.4e-43 178.3 109 78.9
Nitab4.5_0001347g0050 Nicotiana tabacum HOM05D004651 ORTHO05D005761 3.4e-43 178.3 107 78.5
MELO3C026725.2 Cucumis melo HOM05D004651 ORTHO05D005761 7.7e-43 177.2 109 78.0
PSO384G0298 Papaver somniferum HOM05D004651 ORTHO05D005761 7.7e-43 177.2 120 72.5
Sopen02g030210 Solanum pennellii HOM05D004651 ORTHO05D005761 7.7e-43 177.2 107 77.6
CsaV3_4G011920 Cucumis sativus L. HOM05D004651 ORTHO05D005761 1.0e-42 176.8 109 78.9
RcHm_v2.0_Chr3g0480781 Rosa chinensis HOM05D004651 ORTHO05D005761 1.3e-42 176.4 104 77.9
CiPaw.09G033900 Carya illinoinensis HOM05D004651 ORTHO05D005761 1.7e-42 176.0 107 76.6
Zm00001eb034850 Zea mays HOM05D004651 ORTHO05D005761 1.7e-42 176.0 110 73.6
Zm00001eb316630 Zea mays HOM05D004651 ORTHO05D005761 1.7e-42 176.0 98 78.6
Nitab4.5_0003477g0030 Nicotiana tabacum HOM05D004651 ORTHO05D005761 2.2e-42 175.6 102 79.4
Nitab4.5_0004063g0110 Nicotiana tabacum HOM05D004651 ORTHO05D005761 2.2e-42 175.6 107 77.6
PSO339G4089 Papaver somniferum HOM05D004651 ORTHO05D005761 2.2e-42 175.6 120 71.7
Solyc02g085540.1 Solanum lycopersicum HOM05D004651 ORTHO05D005761 2.2e-42 175.6 107 76.6
PGSC0003DMG400012662 Solanum tuberosum HOM05D004651 ORTHO05D005761 2.2e-42 175.6 107 76.6
CiPaw.10G029700 Carya illinoinensis HOM05D004651 ORTHO05D005761 2.9e-42 175.3 118 72.0
FAN02G2491 Fragaria x ananassa HOM05D004651 ORTHO05D005761 5.0e-42 174.5 97 81.4
MD07G1000900 Malus domestica HOM05D004651 ORTHO05D005761 5.0e-42 174.5 101 80.2
QL07p022191 Quercus lobata HOM05D004651 ORTHO05D005761 5.0e-42 174.5 117 70.9
Prupe.7G069800 Prunus persica HOM05D004651 ORTHO05D005761 1.1e-41 173.3 109 76.1
Cpa.g.sc85.122 Carica papaya HOM05D004651 ORTHO05D005761 1.4e-41 172.9 110 76.4
Migut.K00065 Erythranthe guttata HOM05D004651 ORTHO05D005761 1.4e-41 172.9 107 73.8
Lj5g0006028 Lotus japonicus HOM05D004651 ORTHO05D005761 1.4e-41 172.9 118 70.3
Cfa016877 Carpinus fangiana HOM05D004651 ORTHO05D005761 5.5e-41 171.0 115 73.9
Eucgr.A02412 Eucalyptus grandis HOM05D000001 ORTHO05D000003 5.5e-41 171.0 110 73.6
THA.LOC104802364 Tarenaya hassleriana HOM05D004651 ORTHO05D005761 5.5e-41 171.0 118 72.0
Lalb_Chr21g0319241 Lupinus albus HOM05D004651 ORTHO05D005761 7.2e-41 170.6 112 72.3
COL.COLO4_28721 Corchorus olitorius HOM05D004651 ORTHO05D005761 1.2e-40 169.9 105 79.0
Haze_19923 Corylus avellana HOM05D004651 ORTHO05D005761 1.2e-40 169.9 112 73.2
AL5G39450 Arabidopsis lyrata HOM05D004651 ORTHO05D005761 1.6e-40 169.5 118 72.0
Thhalv10017449m.g Eutrema salsugineum HOM05D004651 ORTHO05D005761 1.6e-40 169.5 118 71.2
Sp4g24480 Schrenkiella parvula HOM05D004651 ORTHO05D005761 1.6e-40 169.5 118 71.2
ECA236G1810 Erigeron canadensis HOM05D004651 ORTHO05D005761 2.1e-40 169.1 108 73.1
AT3G57785 Arabidopsis thaliana HOM05D004651 ORTHO05D005761 2.7e-40 168.7 116 72.4
BcaC02g07250 Brassica carinata HOM05D004651 ORTHO05D005761 2.7e-40 168.7 121 71.1
C04p69620 Brassica napus HOM05D004651 ORTHO05D005761 2.7e-40 168.7 121 71.1
BolC4t28461H Brassica oleracea HOM05D004651 ORTHO05D005761 2.7e-40 168.7 121 71.1
BraA04t18667Z Brassica rapa HOM05D004651 ORTHO05D005761 2.7e-40 168.7 121 71.1
Sed0009176 Sechium edule HOM05D004651 ORTHO05D005761 2.7e-40 168.7 110 73.6
BcaB06g29236 Brassica carinata HOM05D004651 ORTHO05D005761 4.7e-40 167.9 121 69.4
BcaC02g07246 Brassica carinata HOM05D004651 ORTHO05D005761 4.7e-40 167.9 121 69.4
TWI34G0893 Tripterygium wilfordii HOM05D004651 ORTHO05D005761 4.7e-40 167.9 107 73.8
TWI34G1227 Tripterygium wilfordii HOM05D004651 ORTHO05D005761 4.7e-40 167.9 107 73.8
Carub.0005s2464 Capsella rubella HOM05D004651 ORTHO05D005761 6.1e-40 167.5 118 71.2
Psat6g130960 Pisum sativum HOM05D004651 ORTHO05D005761 6.1e-40 167.5 105 73.3
Gohir.D11G330800 Gossypium hirsutum HOM05D004651 ORTHO05D005761 7.9e-40 167.2 105 77.1
Gorai.007G361500 Gossypium raimondii HOM05D004651 ORTHO05D005761 7.9e-40 167.2 88 86.4
AL4G40670 Arabidopsis lyrata HOM05D004651 ORTHO05D005761 1.0e-39 166.8 118 70.3
AT2G42310 Arabidopsis thaliana HOM05D004651 ORTHO05D005761 1.0e-39 166.8 118 70.3
Carub.0004s2465 Capsella rubella HOM05D004651 ORTHO05D005761 1.0e-39 166.8 118 70.3
Gohir.D11G330900 Gossypium hirsutum HOM05D004651 ORTHO05D005761 1.4e-39 166.4 105 77.1
Aa31LG10G12520 Aethionema arabicum HOM05D004651 ORTHO05D005761 2.3e-39 165.6 117 69.2
A04p32130 Brassica napus HOM05D004651 ORTHO05D005761 2.3e-39 165.6 121 70.2
Thhalv10006322m.g Eutrema salsugineum HOM05D004651 ORTHO05D005761 2.3e-39 165.6 118 69.5
Gorai.007G361600 Gossypium raimondii HOM05D004651 ORTHO05D005761 2.3e-39 165.6 103 77.7
Medtr1g059290 Medicago truncatula HOM05D004651 ORTHO05D005761 2.3e-39 165.6 111 71.2
Thecc.05G165000 Theobroma cacao HOM05D004651 ORTHO05D005761 2.3e-39 165.6 105 79.0
Ciclev10006760m.g Citrus clementina HOM05D000001 ORTHO05D000003 3.0e-39 165.2 97 78.4
HanXRQChr13g0391011 Helianthus annuus HOM05D004651 ORTHO05D005761 3.0e-39 165.2 108 75.0
Aa31LG1G23980 Aethionema arabicum HOM05D004651 ORTHO05D005761 3.9e-39 164.9 118 69.5
Gohir.A11G313600 Gossypium hirsutum HOM05D004651 ORTHO05D005761 3.9e-39 164.9 105 76.2
BcaNung04397 Brassica carinata HOM05D004651 ORTHO05D005761 5.1e-39 164.5 115 68.7
BraA05t19275Z Brassica rapa HOM05D004651 ORTHO05D005761 5.1e-39 164.5 109 74.3
Gohir.A11G313700 Gossypium hirsutum HOM05D004651 ORTHO05D005761 5.1e-39 164.5 88 86.4
Peaxi162Scf00285g00014 Petunia axillaris HOM05D004651 ORTHO05D005761 5.1e-39 164.5 107 72.9
THA.LOC104819088 Tarenaya hassleriana HOM05D004651 ORTHO05D005761 5.1e-39 164.5 119 70.6
TWI60G1376 Tripterygium wilfordii HOM05D004651 ORTHO05D005761 8.8e-39 163.7 107 73.8
BcaC01g05307 Brassica carinata HOM05D004651 ORTHO05D005761 1.1e-38 163.3 121 70.2
A05p02830 Brassica napus HOM05D004651 ORTHO05D005761 1.1e-38 163.3 109 73.4
PGR004G2434 Punica granatum HOM05D004651 ORTHO05D005761 1.1e-38 163.3 108 71.3
Atru.chr1.949 Acer truncatum HOM05D004651 ORTHO05D005761 1.5e-38 162.9 78 91.0
BcaC02g12474 Brassica carinata HOM05D004651 ORTHO05D005761 2.0e-38 162.5 112 74.1
C04p03440 Brassica napus HOM05D004651 ORTHO05D005761 2.0e-38 162.5 112 74.1
BolC4t21980H Brassica oleracea HOM05D004651 ORTHO05D005761 2.0e-38 162.5 112 74.1
CARHR137350 Cardamine hirsuta HOM05D004651 ORTHO05D005761 2.0e-38 162.5 118 69.5
A03p23620 Brassica napus HOM05D004651 ORTHO05D005761 3.3e-38 161.8 112 74.1
BraA03t11578Z Brassica rapa HOM05D004651 ORTHO05D005761 3.3e-38 161.8 112 74.1
Ca_04847_v3 Cicer arietinum L. HOM05D004651 ORTHO05D005761 4.4e-38 161.4 95 77.9
Lalb_Chr02g0159821 Lupinus albus HOM05D004651 ORTHO05D005761 5.7e-38 161.0 107 73.8
Duzib128G1036 Durio zibethinus HOM05D004651 ORTHO05D005761 3.7e-37 158.3 86 86.0
Duzib093G1593 Durio zibethinus HOM05D004651 ORTHO05D005761 1.4e-36 156.4 112 74.1
SHI26332 Sapria himalayana HOM05D004651 ORTHO05D005761 3.1e-36 155.2 97 72.2
Os09g0487500 Oryza sativa ssp. japonica HOM05D004651 ORTHO05D005761 4.1e-36 154.8 104 68.3
CAN.G358.117 Capsicum annuum HOM05D004651 ORTHO05D005761 7.0e-36 154.1 80 83.8
CSS0043471 Camellia sinensis var. sinensis HOM05D004651 ORTHO05D005761 1.5e-35 152.9 122 65.6
Os08g0505001 Oryza sativa ssp. japonica HOM05D004651 ORTHO05D005761 1.3e-34 149.8 97 70.1
ATR0605G299 Amborella trichopoda HOM05D004651 ORTHO05D005761 2.2e-34 149.1 104 70.2
Sp5g04900 Schrenkiella parvula HOM05D004651 ORTHO05D005761 6.5e-34 147.5 117 60.7
TPR.G25632 Trifolium pratense HOM05D004651 ORTHO05D005761 6.5e-34 147.5 74 87.8
ATR0605G353 Amborella trichopoda HOM05D004651 ORTHO05D005761 9.4e-33 143.7 104 68.3
Prupe.5G050600 Prunus persica HOM05D004651 ORTHO05D005761 8.0e-32 140.6 82 75.6
SEGI_06557 Sequoiadendron giganteum HOM05D004651 ORTHO05D005761 5.3e-28 127.9 100 62.0
C03p28150 Brassica napus HOM05D004651 ORTHO05D005761 4.2e-25 118.2 65 86.2
Mapoly0006s0067 Marchantia polymorpha HOM05D004651 ORTHO05D005761 9.4e-25 117.1 101 58.4
MBI11_g15908_MAGBIO Magnolia biondii HOM05D004651 ORTHO05D005761 3.0e-23 112.1 71 70.4
RcHm_v2.0_Chr5g0057691 Rosa chinensis HOM05D004651 ORTHO05D005761 1.5e-22 109.8 115 54.8
AagrBONN_evm.TU.Sc2ySwM_362.1672 Anthoceros agrestis HOM05D004651 ORTHO05D005761 2.6e-22 109.0 70 70.0
Pp3c3_16790 Physcomitrium patens HOM05D004651 ORTHO05D005761 2.6e-22 109.0 101 55.4
Rhsim10G0114900 Rhododendron simsii HOM05D004651 ORTHO05D005761 1.4e-20 103.2 72 73.6
CBR_g8350 Chara braunii HOM05D004651 ORTHO05D005761 4.1e-20 101.7 99 53.5
Oeu038276.1 Olea europaea HOM05D004651 ORTHO05D005761 1.5e-17 93.2 51 82.4
SMO203G0043 Selaginella moellendorffii HOM05D004651 ORTHO05D005761 1.0e-15 87.0 73 52.1
BcaB06g26137 Brassica carinata HOM05D004651 ORTHO05D005761 2.3e-15 85.9 68 63.2
MCO03G385 Micromonas commoda HOM05D004651 ORTHO05D005761 1.7e-13 79.7 62 58.1
TAR623G0451 Trochodendron aralioides HOM05D004651 ORTHO05D005761 1.6e-11 73.2 55 67.3
unitig_8.g3516 Utricularia gibba HOM05D004651 ORTHO05D005761 7.7e-11 70.9 57 57.9
SGA_v2.0_scaffold18G08230 Striga asiatica HOM05D004651 ORTHO05D401477 7.2e-09 64.3 71 50.7
Aa31LG3G1100 Aethionema arabicum HOM05D004651 ORTHO05D005761 9.8e-06 53.9 107 37.4


User provided reference genes

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