Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0019756 Camellia sinensis var. sinensis HOM05D004308 ORTHO05D005139 6.3e-266 920.2 470 100.0
Actinidia06853 Actinidia chinensis HOM05D004308 ORTHO05D005139 5.8e-203 711.1 494 76.5
Dinv13431 Davidia involucrata HOM05D004308 ORTHO05D005139 6.4e-202 707.6 508 74.2
GSVIVG01025407001 Vitis vinifera HOM05D004308 ORTHO05D005139 5.4e-185 651.4 499 67.7
vmacro11846 Vaccinium macrocarpon HOM05D004308 ORTHO05D005139 7.1e-185 651.0 570 65.3
Prupe.6G010000 Prunus persica HOM05D004308 ORTHO05D005139 7.1e-177 624.4 496 65.9
Atru.chr1.4126 Acer truncatum HOM05D004308 ORTHO05D005139 9.6e-174 614.0 490 65.7
TAR369G0492 Trochodendron aralioides HOM05D004308 ORTHO05D005139 8.1e-173 610.9 515 65.2
Rhsim13G0230300 Rhododendron simsii HOM05D004308 ORTHO05D005139 1.1e-172 610.5 445 73.7
MD12G1151800 Malus domestica HOM05D004308 ORTHO05D005139 2.4e-172 609.4 483 65.8
MD03G1008000 Malus domestica HOM05D004308 ORTHO05D005139 4.0e-172 608.6 480 66.2
RcHm_v2.0_Chr5g0081551 Rosa chinensis HOM05D004308 ORTHO05D005139 3.4e-171 605.5 486 65.6
CiPaw.13G173300 Carya illinoinensis HOM05D004308 ORTHO05D005139 1.3e-170 603.6 488 66.0
Ciclev10015009m.g Citrus clementina HOM05D004308 ORTHO05D005139 1.3e-170 603.6 493 64.3
ECA238G0198 Erigeron canadensis HOM05D004308 ORTHO05D005139 2.2e-170 602.8 489 64.8
TWI32G0511 Tripterygium wilfordii HOM05D004308 ORTHO05D005139 2.2e-170 602.8 500 63.4
QL01p008001 Quercus lobata HOM05D004308 ORTHO05D005139 4.2e-169 598.6 492 65.7
FvH4_3g44841 Fragaria vesca HOM05D004308 ORTHO05D005139 1.2e-168 597.0 484 64.5
CiPaw.13G173400 Carya illinoinensis HOM05D004308 ORTHO05D005139 1.6e-168 596.7 488 65.2
Aqoxy7G00472 Aquilegia oxysepala HOM05D004308 ORTHO05D005139 6.0e-168 594.7 496 63.9
Potri.003G216900 Populus trichocarpa HOM05D004308 ORTHO05D005139 6.0e-168 594.7 495 63.6
PGSC0003DMG400032139 Solanum tuberosum HOM05D004308 ORTHO05D005139 3.9e-167 592.0 515 61.6
Sopen01g002010 Solanum pennellii HOM05D004308 ORTHO05D005139 2.1e-165 586.3 511 61.4
Thecc.09G212800 Theobroma cacao HOM05D004308 ORTHO05D005139 2.1e-165 586.3 498 62.4
Manes.17G081200 Manihot esculenta HOM05D004308 ORTHO05D005139 6.2e-165 584.7 491 64.0
CAN.G158.6 Capsicum annuum HOM05D004308 ORTHO05D005139 3.1e-164 582.4 502 61.4
Solyc01g006000.3 Solanum lycopersicum HOM05D004308 ORTHO05D005139 6.9e-164 581.3 511 61.3
Nitab4.5_0001059g0010 Nicotiana tabacum HOM05D004308 ORTHO05D005139 2.0e-163 579.7 501 62.9
ClCG08G005760 Citrullus lanatus HOM05D004308 ORTHO05D005139 3.4e-163 578.9 492 63.0
ClCG01G010120 Citrullus lanatus HOM05D004308 ORTHO05D005139 7.6e-163 577.8 491 62.1
Migut.I00336 Erythranthe guttata HOM05D004308 ORTHO05D005139 1.3e-162 577.0 479 64.1
DCAR_001990 Daucus carota HOM05D004308 ORTHO05D005139 2.2e-162 576.2 494 62.6
Hund21645 Selenicereus undatus HOM05D004308 ORTHO05D005139 2.2e-162 576.2 486 63.8
FAN11G1034 Fragaria x ananassa HOM05D004308 ORTHO05D005139 3.8e-162 575.5 472 63.8
Cc00_g18210 Coffea canephora HOM05D004308 ORTHO05D005139 4.9e-162 575.1 509 59.9
Duzib177G0548 Durio zibethinus HOM05D004308 ORTHO05D005139 1.1e-161 573.9 483 63.4
MELO3C015647.2 Cucumis melo HOM05D004308 ORTHO05D005139 1.4e-161 573.5 488 63.1
AUR62000023 Chenopodium quinoa HOM05D004308 ORTHO05D005139 2.1e-160 569.7 487 63.2
MBI13_g29631_MAGBIO Magnolia biondii HOM05D004308 ORTHO05D005139 2.1e-160 569.7 496 61.1
Hma1.2p1_0972F.1_g242793 Hydrangea macrophylla HOM05D004308 ORTHO05D005139 7.9e-160 567.8 489 63.8
Lj3g0012221 Lotus japonicus HOM05D004308 ORTHO05D005139 7.9e-160 567.8 481 63.0
LjContig00141g0028139 Lotus japonicus HOM05D004308 ORTHO05D005139 6.7e-159 564.7 482 63.5
PSO782G3227 Papaver somniferum HOM05D004308 ORTHO05D005139 1.9e-158 563.1 506 61.3
Sp1g10500 Schrenkiella parvula HOM05D004308 ORTHO05D005139 5.7e-158 561.6 494 60.7
SalBow5G0018 Salvia bowleyana HOM05D004308 ORTHO05D005139 9.7e-158 560.8 508 60.6
Sed0009913 Sechium edule HOM05D004308 ORTHO05D005139 9.7e-158 560.8 497 61.0
Ah.06g193030 Amaranthus hybridus HOM05D004308 ORTHO05D005139 1.3e-157 560.5 487 63.9
Lj9C99G0 Lonicera japonica HOM05D004308 ORTHO05D005139 2.2e-157 559.7 506 62.1
SGA_v2.0_scaffold28G11761 Striga asiatica HOM05D004308 ORTHO05D005139 2.2e-157 559.7 486 61.7
Gorai.011G002800 Gossypium raimondii HOM05D004308 ORTHO05D005139 4.8e-157 558.5 500 61.2
A08p33180 Brassica napus HOM05D004308 ORTHO05D005139 6.3e-157 558.1 499 60.1
BraA08t35236Z Brassica rapa HOM05D004308 ORTHO05D005139 8.2e-157 557.8 499 59.9
Thhalv10007452m.g Eutrema salsugineum HOM05D004308 ORTHO05D005139 1.8e-156 556.6 494 60.1
Glyma.07G221600 Glycine max HOM05D004308 ORTHO05D005139 1.8e-156 556.6 480 61.2
Carub.0001s1154 Capsella rubella HOM05D004308 ORTHO05D005139 3.1e-156 555.8 485 60.6
Lsat_1_v5_gn_3_32861 Lactuca sativa HOM05D004308 ORTHO05D005139 5.3e-156 555.1 488 60.7
THA.LOC104811063 Tarenaya hassleriana HOM05D004308 ORTHO05D005139 1.2e-155 553.9 487 60.2
Eucgr.F02225 Eucalyptus grandis HOM05D004308 ORTHO05D005139 2.6e-155 552.7 487 60.0
Peaxi162Scf00100g00724 Petunia axillaris HOM05D004308 ORTHO05D005139 2.6e-155 552.7 531 58.2
Aa31LG1G2850 Aethionema arabicum HOM05D004308 ORTHO05D005139 4.5e-155 552.0 493 59.6
C08p15000 Brassica napus HOM05D004308 ORTHO05D005139 7.7e-155 551.2 499 59.5
BolC8t49130H Brassica oleracea HOM05D004308 ORTHO05D005139 7.7e-155 551.2 499 59.5
AL1G23050 Arabidopsis lyrata HOM05D004308 ORTHO05D005139 5.0e-154 548.5 507 58.4
BcaB03g13224 Brassica carinata HOM05D004308 ORTHO05D005139 6.5e-154 548.1 494 58.9
A09p64290 Brassica napus HOM05D004308 ORTHO05D005139 1.4e-153 547.0 479 59.5
BraA09t41772Z Brassica rapa HOM05D004308 ORTHO05D005139 1.4e-153 547.0 479 59.5
Medtr4g084070 Medicago truncatula HOM05D004308 ORTHO05D005139 1.9e-153 546.6 491 60.7
BolC8t52327H Brassica oleracea HOM05D004308 ORTHO05D005139 9.4e-153 544.3 489 59.1
C08p47900 Brassica napus HOM05D004308 ORTHO05D005139 1.6e-152 543.5 489 59.1
TPR.G20984 Trifolium pratense HOM05D004308 ORTHO05D005139 3.6e-152 542.3 489 59.7
Lalb_Chr05g0219691 Lupinus albus HOM05D004308 ORTHO05D005139 6.1e-152 541.6 487 60.0
VMungo0251G2308 Vigna mungo HOM05D004308 ORTHO05D005139 6.3e-149 531.6 480 59.8
arahy.Tifrunner.gnm1.ann1.6VJH5B Arachis hypogaea HOM05D004308 ORTHO05D005139 5.3e-148 528.5 495 58.4
FAN21G1794 Fragaria x ananassa HOM05D004308 ORTHO05D005139 5.9e-147 525.0 450 61.8
Phvul.009G191800 Phaseolus vulgaris HOM05D004308 ORTHO05D005139 1.3e-146 523.9 480 58.8
EL10Ac4g10352 Beta vulgaris HOM05D004308 ORTHO05D005139 2.9e-146 522.7 488 60.2
AUR62019194 Chenopodium quinoa HOM05D004308 ORTHO05D005139 4.7e-144 515.4 476 60.5
CiPaw.04G144200 Carya illinoinensis HOM05D004308 ORTHO05D005139 6.7e-143 511.5 446 64.1
Psat7g130280 Pisum sativum HOM05D004308 ORTHO05D005139 4.8e-141 505.4 486 57.8
arahy.Tifrunner.gnm1.ann1.SIQ1MV Arachis hypogaea HOM05D004308 ORTHO05D005139 2.0e-139 500.0 503 56.7
HanXRQChr07g0196751 Helianthus annuus HOM05D004308 ORTHO05D005139 4.5e-139 498.8 429 62.5
CDE05G0081 Ceratophyllum demersum HOM05D004269 ORTHO05D007106 1.0e-138 497.7 481 56.3
Haze_22983 Corylus avellana HOM05D004308 ORTHO05D005139 2.2e-138 496.5 437 63.6
FAN25G2014 Fragaria x ananassa HOM05D004308 ORTHO05D005139 3.8e-138 495.7 430 61.2
Gohir.A10G002400 Gossypium hirsutum HOM05D004308 ORTHO05D005139 6.7e-135 485.0 453 58.7
Duzib177G1053 Durio zibethinus HOM05D004308 ORTHO05D005139 8.8e-135 484.6 440 59.5
PSO063G3498 Papaver somniferum HOM05D004308 ORTHO05D005139 7.4e-134 481.5 486 56.2
Os12g0498700 Oryza sativa ssp. japonica HOM05D004308 ORTHO05D005139 1.1e-132 477.6 488 54.1
CANSAT78G0795 Cannabis sativa HOM05D004308 ORTHO05D005139 1.8e-132 476.9 386 66.1
Gohir.D10G002400 Gossypium hirsutum HOM05D004308 ORTHO05D005139 1.3e-130 470.7 393 63.9
Sabra03G0162000 Salix brachista HOM05D004308 ORTHO05D005139 5.5e-129 465.3 480 55.8
Zm00001eb162820 Zea mays HOM05D004308 ORTHO05D005139 5.7e-126 455.3 478 53.1
Nitab4.5_0022753g0010 Nicotiana tabacum HOM05D004308 ORTHO05D005139 8.3e-125 451.4 352 65.6
Lju963A2G3 Lonicera japonica HOM05D004308 ORTHO05D005139 2.5e-121 439.9 338 67.8
MD14G1141900 Malus domestica HOM05D004308 ORTHO05D005139 4.4e-118 429.1 339 64.9
AT1G11880 Arabidopsis thaliana HOM05D004308 ORTHO05D005139 2.8e-117 426.4 343 62.4
CsaV3_1G042220 Cucumis sativus L. HOM05D004308 ORTHO05D005139 4.8e-117 425.6 366 61.5
Cpa.g.sc1833.2 Carica papaya HOM05D004308 ORTHO05D005139 4.2e-113 412.5 458 53.3
ATR0598G220 Amborella trichopoda HOM05D004308 ORTHO05D005139 1.6e-112 410.6 381 56.7
MD11G1011600 Malus domestica HOM05D004308 ORTHO05D005139 1.2e-110 404.4 379 57.8
Nn4g26332 Nelumbo nucifera HOM05D004308 ORTHO05D005139 5.7e-110 402.1 495 49.5
Phvul.002G098000 Phaseolus vulgaris HOM05D004308 ORTHO05D005139 1.8e-108 397.1 352 59.1
CiPaw.13G173800 Carya illinoinensis HOM05D004308 ORTHO05D005139 1.0e-106 391.3 478 49.8
Ca_18762_v3 Cicer arietinum L. HOM05D004308 ORTHO05D005139 2.5e-105 386.7 421 51.3
Lj9A102G3 Lonicera japonica HOM05D004308 ORTHO05D005139 5.6e-105 385.6 423 53.9
Mapoly0040s0060 Marchantia polymorpha HOM05D004308 ORTHO05D005139 1.8e-103 380.6 494 44.1
unitig_749.g14167 Utricularia gibba HOM05D004308 ORTHO05D005139 2.6e-102 376.7 484 49.4
Sc09g0000270 Simmondsia chinensis HOM05D004308 ORTHO05D005139 3.4e-102 376.3 331 59.2
SHI31261 Sapria himalayana HOM05D004308 ORTHO05D005139 2.9e-101 373.2 578 42.2
CiPaw.13G173500 Carya illinoinensis HOM05D004308 ORTHO05D005139 1.3e-98 364.4 272 69.9
Lsat_1_v5_gn_4_166260 Lactuca sativa HOM05D004308 ORTHO05D005139 1.5e-94 350.9 280 62.9
HPP92_026953 Vanilla planifolia HOM05D004308 ORTHO05D005139 5.8e-94 349.0 334 57.5
Pp3c10_8190 Physcomitrium patens HOM05D004308 ORTHO05D005139 1.7e-93 347.4 495 42.2
CiPaw.13G173700 Carya illinoinensis HOM05D004308 ORTHO05D005139 5.1e-90 335.9 367 54.2
Lju1040C2G10 Lonicera japonica HOM05D004308 ORTHO05D005139 1.5e-89 334.3 246 69.9
Lj9A97G16 Lonicera japonica HOM05D004308 ORTHO05D005139 2.5e-89 333.6 361 52.9
SEGI_38936 Sequoiadendron giganteum HOM05D004308 ORTHO05D005139 3.1e-87 326.6 367 48.5
SMO203G0184 Selaginella moellendorffii HOM05D004308 ORTHO05D005139 4.9e-85 319.3 473 42.3
Hma1.2p1_0972F.1_g242796 Hydrangea macrophylla HOM05D004308 ORTHO05D005139 1.9e-81 307.4 258 65.9
MD03G1008200 Malus domestica HOM05D004308 ORTHO05D005139 7.3e-81 305.4 613 36.9
Zm00001eb118570 Zea mays HOM05D004308 ORTHO05D005139 7.3e-81 305.4 286 57.0
Lju2253A0T6 Lonicera japonica HOM05D004308 ORTHO05D005139 6.6e-74 282.3 259 61.4
CiPaw.13G173600 Carya illinoinensis HOM05D004308 ORTHO05D005139 9.0e-71 271.9 223 63.7
Lju366A0G8 Lonicera japonica HOM05D004308 ORTHO05D005139 1.7e-69 267.7 190 67.9
TAR623G1609 Trochodendron aralioides HOM05D004308 ORTHO05D005139 3.8e-69 266.5 250 61.2
COL.COLO4_34992 Corchorus olitorius HOM05D004308 ORTHO05D005139 1.0e-66 258.5 244 59.0
CiPaw.04G144000 Carya illinoinensis HOM05D004308 ORTHO05D005139 1.7e-66 257.7 171 71.9
CARHR012200 Cardamine hirsuta HOM05D004308 ORTHO05D005139 2.9e-61 240.4 247 54.3
Lju357C0G0 Lonicera japonica HOM05D004308 ORTHO05D005139 1.9e-60 237.7 375 42.4
CiPaw.13G174000 Carya illinoinensis HOM05D004308 ORTHO05D005139 4.2e-60 236.5 193 63.7
Lju1680A2G14 Lonicera japonica HOM05D004308 ORTHO05D005139 5.4e-60 236.1 206 64.1
Lsat_1_v5_gn_3_8900 Lactuca sativa HOM05D004308 ORTHO05D005139 4.3e-57 226.5 202 58.4
Lju963A1G2 Lonicera japonica HOM05D004308 ORTHO05D005139 5.8e-54 216.1 406 39.2
SEGI_23646 Sequoiadendron giganteum HOM05D004308 ORTHO05D005139 9.3e-52 208.8 211 54.5
Sc09g0000260 Simmondsia chinensis HOM05D004308 ORTHO05D005139 2.6e-46 190.7 175 61.1
QL01p010377 Quercus lobata HOM05D004308 ORTHO05D005139 6.5e-45 186.0 152 63.2
MCO10G290 Micromonas commoda HOM05D004308 ORTHO05D005139 4.2e-44 183.3 483 31.1
Gohir.A10G158900 Gossypium hirsutum HOM05D004308 ORTHO05D005139 5.1e-34 149.8 207 47.8
Nitab4.5_0000775g0120 Nicotiana tabacum HOM05D004308 ORTHO05D005139 2.0e-30 137.9 179 49.2
PRCOL_00002453 Prasinoderma coloniale HOM05D004308 ORTHO05D005139 5.5e-28 129.8 417 30.0
Glyma.20G019967 Glycine max HOM05D004308 ORTHO05D005139 1.2e-27 128.6 149 45.6
Cre07.g320650 Chlamydomonas reinhardtii HOM05D004308 ORTHO05D005139 1.6e-27 128.3 597 24.6
Glyma.20G020033 Glycine max HOM05D004308 ORTHO05D005139 1.4e-26 125.2 94 70.2
DCAR_001389 Daucus carota HOM05D004308 ORTHO05D005139 5.1e-26 123.2 102 66.7
SEGI_23095 Sequoiadendron giganteum HOM05D004308 ORTHO05D005139 5.1e-26 123.2 157 46.5
Lju2253C0T1 Lonicera japonica HOM05D004308 ORTHO05D005139 1.5e-22 111.7 118 58.5
Nitab4.5_0000032g0180 Nicotiana tabacum HOM05D004308 ORTHO05D005139 4.5e-22 110.2 119 60.5
Lju366C0T1 Lonicera japonica HOM05D004308 ORTHO05D005139 1.0e-21 109.0 118 56.8
Lj9C97T10 Lonicera japonica HOM05D004308 ORTHO05D005139 5.0e-21 106.7 118 55.1
Lju963A4G1 Lonicera japonica HOM05D004308 ORTHO05D005139 3.2e-20 104.0 64 70.3
Lj9A108T0 Lonicera japonica HOM05D004308 ORTHO05D005139 8.0e-19 99.4 80 62.5
Lju1680A2G13 Lonicera japonica HOM05D004308 ORTHO05D005139 3.3e-17 94.0 64 76.6
Lsat_1_v5_gn_9_99701 Lactuca sativa HOM05D004308 ORTHO05D005139 2.2e-16 91.3 191 37.7
CBR_g46841 Chara braunii HOM05D004308 ORTHO05D005139 4.2e-12 77.0 89 42.7
Lju963C4T0 Lonicera japonica HOM05D004308 ORTHO05D005139 5.5e-12 76.6 85 57.6
Atru.chr10.219 Acer truncatum HOM05D004308 ORTHO05D005139 1.0e-10 72.4 101 46.5
AUR62037285 Chenopodium quinoa HOM05D004308 ORTHO05D005139 1.5e-09 68.6 39 82.1
Lju357C1T0 Lonicera japonica HOM05D004308 ORTHO05D005139 2.2e-08 64.7 81 50.6
Lju366C0T2 Lonicera japonica HOM05D004308 ORTHO05D005139 2.8e-08 64.3 88 48.9
Atru.chr10.196 Acer truncatum HOM05D004308 ORTHO05D005139 4.8e-08 63.5 54 63.0
Lju2253C0T0 Lonicera japonica HOM05D004308 ORTHO05D005139 6.3e-08 63.2 69 55.1


User provided reference genes

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