Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0019747 Camellia sinensis var. sinensis HOM05D001639 ORTHO05D004140 1.1e-212 743.0 371 100.0
Actinidia28947 Actinidia chinensis HOM05D001639 ORTHO05D004140 2.2e-133 479.6 391 67.8
Dinv31349 Davidia involucrata HOM05D001639 ORTHO05D004140 1.2e-131 473.8 391 66.2
Dinv11803 Davidia involucrata HOM05D001639 ORTHO05D004140 9.4e-124 447.6 390 64.6
vmacro04888 Vaccinium macrocarpon HOM05D001639 ORTHO05D004140 7.5e-121 438.0 389 63.8
Rhsim09G0154200 Rhododendron simsii HOM05D001639 ORTHO05D004140 5.0e-117 425.2 389 63.2
Lj1A922T71 Lonicera japonica HOM05D001639 ORTHO05D004140 4.7e-115 418.7 389 60.7
CSS0047322 Camellia sinensis var. sinensis HOM05D001639 ORTHO05D004140 4.0e-114 415.6 398 59.5
Hma1.2p1_0453F.1_g156050 Hydrangea macrophylla HOM05D001639 ORTHO05D004140 4.0e-114 415.6 389 60.7
Cfa001598 Carpinus fangiana HOM05D001639 ORTHO05D004140 2.9e-101 372.9 390 57.7
CiPaw.02G176300 Carya illinoinensis HOM05D001639 ORTHO05D004140 1.4e-98 364.0 380 57.1
Haze_16931 Corylus avellana HOM05D001639 ORTHO05D004140 1.8e-98 363.6 389 56.6
Cpa.g.sc60.50 Carica papaya HOM05D001639 ORTHO05D004140 5.7e-97 358.6 393 53.2
Manes.10G043100 Manihot esculenta HOM05D001639 ORTHO05D004140 1.7e-96 357.1 397 52.9
Prupe.2G217800 Prunus persica HOM05D001639 ORTHO05D004140 3.7e-96 355.9 390 54.4
CiPaw.01G276100 Carya illinoinensis HOM05D001639 ORTHO05D004140 1.1e-95 354.4 392 56.1
COL.COLO4_23728 Corchorus olitorius HOM05D001639 ORTHO05D004140 7.0e-95 351.7 401 52.6
TAR369G0055 Trochodendron aralioides HOM05D001639 ORTHO05D004140 1.2e-94 350.9 387 52.5
Thecc.10G068700 Theobroma cacao HOM05D001639 ORTHO05D004140 4.6e-94 349.0 401 52.4
GSVIVG01016323001 Vitis vinifera HOM05D001639 ORTHO05D004140 4.6e-94 349.0 390 54.4
FvH4_7g20100 Fragaria vesca HOM05D001639 ORTHO05D004140 7.8e-94 348.2 392 53.8
RcHm_v2.0_Chr1g0364061 Rosa chinensis HOM05D001639 ORTHO05D004140 1.7e-93 347.1 392 53.3
FAN10G2085 Fragaria x ananassa HOM05D001639 ORTHO05D004140 1.1e-92 344.4 392 53.6
Duzib106G0065 Durio zibethinus HOM05D001639 ORTHO05D004140 1.5e-92 344.0 401 53.4
QL08p056763 Quercus lobata HOM05D001639 ORTHO05D004140 1.5e-92 344.0 402 52.5
FAN01G0541 Fragaria x ananassa HOM05D001639 ORTHO05D004140 2.5e-92 343.2 392 53.3
FAN06G3703 Fragaria x ananassa HOM05D001639 ORTHO05D004140 9.5e-92 341.3 392 53.1
MD07G1178700 Malus domestica HOM05D001639 ORTHO05D004140 2.1e-91 340.1 389 51.9
Ciclev10030708m.g Citrus clementina HOM05D001639 ORTHO05D004140 4.7e-91 339.0 396 51.5
MD01G1130600 Malus domestica HOM05D001639 ORTHO05D004140 8.0e-91 338.2 389 51.4
Atru.chr12.647 Acer truncatum HOM05D001639 ORTHO05D004140 1.0e-90 337.8 408 52.0
Atru.chr12.674 Acer truncatum HOM05D001639 ORTHO05D004140 1.0e-90 337.8 408 52.0
FAN03G2481 Fragaria x ananassa HOM05D001639 ORTHO05D004140 1.0e-90 337.8 391 51.9
Duzib128G0828 Durio zibethinus HOM05D001639 ORTHO05D004140 1.5e-89 334.0 400 49.5
AUR62027922 Chenopodium quinoa HOM05D001639 ORTHO05D004140 5.8e-89 332.0 396 50.3
AUR62020778 Chenopodium quinoa HOM05D001639 ORTHO05D004140 4.9e-88 328.9 397 50.6
Potri.008G043700 Populus trichocarpa HOM05D001639 ORTHO05D004140 1.1e-87 327.8 401 50.4
Sabra08G0030200 Salix brachista HOM05D001639 ORTHO05D004140 4.1e-87 325.9 401 50.4
Nn2g10677 Nelumbo nucifera HOM05D001639 ORTHO05D004140 1.0e-85 321.2 384 50.0
Gorai.002G143300 Gossypium raimondii HOM05D001639 ORTHO05D004140 1.7e-85 320.5 400 49.0
Sabra10G0168600 Salix brachista HOM05D001639 ORTHO05D004140 2.3e-85 320.1 404 49.5
Gohir.D01G117800 Gossypium hirsutum HOM05D001639 ORTHO05D004140 1.1e-84 317.8 400 48.8
Potri.010G217900 Populus trichocarpa HOM05D001639 ORTHO05D004140 5.6e-84 315.5 401 50.6
EL10Ac2g03564 Beta vulgaris HOM05D001639 ORTHO05D004140 9.5e-84 314.7 394 50.0
Gohir.A01G133400 Gossypium hirsutum HOM05D001639 ORTHO05D004140 9.5e-84 314.7 400 48.5
PGR142G2027 Punica granatum HOM05D001639 ORTHO05D004140 9.5e-84 314.7 399 50.1
CsaV3_5G036460 Cucumis sativus L. HOM05D001639 ORTHO05D004140 1.8e-82 310.5 385 49.6
TWI38G1401 Tripterygium wilfordii HOM05D001639 ORTHO05D004140 4.0e-82 309.3 399 50.6
Hund22486 Selenicereus undatus HOM05D001639 ORTHO05D004140 6.8e-82 308.5 400 49.5
MELO3C012444.2 Cucumis melo HOM05D001639 ORTHO05D004140 8.9e-82 308.1 385 49.9
Sc20g0002120 Simmondsia chinensis HOM05D001639 ORTHO05D004140 1.2e-81 307.8 396 46.7
Manes.07G102700 Manihot esculenta HOM05D001639 ORTHO05D004140 2.0e-81 307.0 396 48.5
Ah.10g033000 Amaranthus hybridus HOM05D001639 ORTHO05D004140 7.5e-81 305.1 407 47.7
TPR.G40285 Trifolium pratense HOM05D001639 ORTHO05D004140 1.7e-80 303.9 386 48.2
Thhalv10016258m.g Eutrema salsugineum HOM05D001639 ORTHO05D004140 2.2e-80 303.5 382 48.7
Oeu051327.1 Olea europaea HOM05D001639 ORTHO05D004140 6.4e-80 302.0 414 49.0
Lalb_Chr02g0141921 Lupinus albus HOM05D001639 ORTHO05D004140 8.3e-80 301.6 393 47.6
Glyma.10G213200 Glycine max HOM05D001639 ORTHO05D004140 3.2e-79 299.7 397 48.9
ClCG05G020850 Citrullus lanatus HOM05D001639 ORTHO05D004140 1.6e-78 297.4 385 46.8
Ca_10588_v3 Cicer arietinum L. HOM05D001639 ORTHO05D004140 3.9e-77 292.7 397 46.3
Eucgr.G02805 Eucalyptus grandis HOM05D001639 ORTHO05D004140 3.9e-77 292.7 400 47.2
CARHR130070 Cardamine hirsuta HOM05D001639 ORTHO05D004140 5.1e-77 292.4 390 47.4
AL4G31920 Arabidopsis lyrata HOM05D001639 ORTHO05D004140 8.6e-77 291.6 393 46.1
Lj5g0017893 Lotus japonicus HOM05D001639 ORTHO05D004140 1.5e-76 290.8 384 47.9
arahy.Tifrunner.gnm1.ann1.ME3VYR Arachis hypogaea HOM05D001639 ORTHO05D004140 1.9e-76 290.4 401 46.6
Glyma.20G177800 Glycine max HOM05D001639 ORTHO05D004140 1.9e-76 290.4 398 47.5
DCAR_006463 Daucus carota HOM05D001639 ORTHO05D004140 5.6e-76 288.9 383 46.7
HanXRQChr14g0440781 Helianthus annuus HOM05D001639 ORTHO05D004140 5.6e-76 288.9 384 47.9
Nn2g13007 Nelumbo nucifera HOM05D001639 ORTHO05D004140 5.6e-76 288.9 380 46.8
PSO384G0277 Papaver somniferum HOM05D001639 ORTHO05D004140 7.3e-76 288.5 400 46.0
Solyc04g050040.3 Solanum lycopersicum HOM05D001639 ORTHO05D004140 9.5e-76 288.1 380 49.7
Sed0012976 Sechium edule HOM05D001639 ORTHO05D004140 1.2e-75 287.7 385 47.0
Cc09_g02780 Coffea canephora HOM05D001639 ORTHO05D004140 3.6e-75 286.2 390 48.7
Sopen04g020690 Solanum pennellii HOM05D001639 ORTHO05D004140 3.6e-75 286.2 382 49.5
Peaxi162Scf00373g00710 Petunia axillaris HOM05D001639 ORTHO05D004140 6.2e-75 285.4 376 48.9
PSO339G2101 Papaver somniferum HOM05D001639 ORTHO05D004140 1.1e-74 284.6 402 45.3
Psat6g184800 Pisum sativum HOM05D001639 ORTHO05D004140 1.4e-74 284.3 390 45.9
Carub.0004s1757 Capsella rubella HOM05D001639 ORTHO05D004140 2.3e-74 283.5 392 44.1
Aa31sc26G20 Aethionema arabicum HOM05D001639 ORTHO05D004140 1.3e-72 277.7 392 44.9
Sp4g18070 Schrenkiella parvula HOM05D001639 ORTHO05D004140 4.9e-72 275.8 382 46.1
TAR633G2433 Trochodendron aralioides HOM05D001639 ORTHO05D004140 8.4e-72 275.0 377 49.1
ECA238G1467 Erigeron canadensis HOM05D001639 ORTHO05D004140 2.4e-71 273.5 401 42.9
Lsat_1_v5_gn_2_114120 Lactuca sativa HOM05D001639 ORTHO05D004140 3.2e-71 273.1 383 46.2
AT2G35800 Arabidopsis thaliana HOM05D001639 ORTHO05D004140 7.1e-71 271.9 392 45.4
Nitab4.5_0000061g0120 Nicotiana tabacum HOM05D001639 ORTHO05D004140 7.1e-71 271.9 361 48.5
VMungo0720G0568 Vigna mungo HOM05D001639 ORTHO05D004140 7.1e-71 271.9 398 44.7
arahy.Tifrunner.gnm1.ann1.66TP8S Arachis hypogaea HOM05D001639 ORTHO05D004140 1.2e-70 271.2 378 46.6
CAN.G925.4 Capsicum annuum HOM05D001639 ORTHO05D004140 3.9e-69 266.2 374 46.3
C03p23000 Brassica napus HOM05D001639 ORTHO05D004140 6.6e-69 265.4 377 44.0
BolC3t14701H Brassica oleracea HOM05D001639 ORTHO05D004140 6.6e-69 265.4 377 44.0
Medtr1g095780 Medicago truncatula HOM05D001639 ORTHO05D004140 6.6e-69 265.4 387 45.0
Gohir.D06G174400 Gossypium hirsutum HOM05D001639 ORTHO05D004140 1.9e-68 263.8 383 44.9
Nitab4.5_0003116g0030 Nicotiana tabacum HOM05D001639 ORTHO05D004140 1.9e-68 263.8 364 47.3
HanXRQChr07g0200411 Helianthus annuus HOM05D001639 ORTHO05D004140 2.5e-68 263.5 379 46.4
Phvul.007G092200 Phaseolus vulgaris HOM05D001639 ORTHO05D004140 2.1e-67 260.4 399 42.9
BcaC01g05705 Brassica carinata HOM05D001639 ORTHO05D004140 4.7e-67 259.2 377 43.2
BcaB06g28874 Brassica carinata HOM05D001639 ORTHO05D004140 6.2e-67 258.8 374 44.4
Gorai.010G204000 Gossypium raimondii HOM05D001639 ORTHO05D004140 1.1e-66 258.1 383 44.4
BraA03t11227Z Brassica rapa HOM05D001639 ORTHO05D004140 9.9e-65 251.5 370 44.3
Migut.F02030 Erythranthe guttata HOM05D001639 ORTHO05D004140 9.9e-65 251.5 400 43.5
A04p27270 Brassica napus HOM05D001639 ORTHO05D004140 2.9e-64 250.0 368 44.3
BraA04t18225Z Brassica rapa HOM05D001639 ORTHO05D004140 6.4e-64 248.8 376 44.1
BcaC02g07667 Brassica carinata HOM05D001639 ORTHO05D004140 1.9e-63 247.3 366 43.4
C04p64790 Brassica napus HOM05D001639 ORTHO05D004140 1.9e-63 247.3 368 43.8
BolC4t27956H Brassica oleracea HOM05D001639 ORTHO05D004140 1.9e-63 247.3 368 43.8
Gorai.010G203900 Gossypium raimondii HOM05D001639 ORTHO05D004140 2.4e-63 246.9 382 43.5
MSTRG.8167 Avicennia marina HOM05D001639 ORTHO05D004140 1.6e-62 244.2 406 42.4
A03p19750 Brassica napus HOM05D001639 ORTHO05D004140 2.1e-62 243.8 370 43.5
BcaB01g03879 Brassica carinata HOM05D001639 ORTHO05D004140 2.3e-61 240.4 378 42.9
SGA_v2.0_scaffold329G48833 Striga asiatica HOM05D001639 ORTHO05D004140 5.1e-61 239.2 398 43.0
Gohir.A06G178800 Gossypium hirsutum HOM05D001639 ORTHO05D004140 8.7e-61 238.4 382 41.9
Gohir.D06G174300 Gossypium hirsutum HOM05D001639 ORTHO05D004140 8.7e-61 238.4 382 42.4
Sed0023440 Sechium edule HOM05D001639 ORTHO05D004140 2.5e-60 236.9 384 41.7
Gohir.A06G178700 Gossypium hirsutum HOM05D001639 ORTHO05D004140 1.8e-58 230.7 291 47.4
SalBow1G3851 Salvia bowleyana HOM05D001639 ORTHO05D004140 2.2e-56 223.8 403 41.7
SalBow1G1021 Salvia bowleyana HOM05D001639 ORTHO05D004140 4.2e-55 219.5 403 41.4
ATR1159G089 Amborella trichopoda HOM05D001639 ORTHO05D004140 3.5e-54 216.5 417 36.9
Lj8A96T35 Lonicera japonica HOM05D001639 ORTHO05D004140 3.4e-49 199.9 380 39.2
Aqoxy3G00782 Aquilegia oxysepala HOM05D001639 ORTHO05D004140 1.7e-48 197.6 410 36.3
Lalb_Chr19g0129511 Lupinus albus HOM05D001639 ORTHO05D004140 4.2e-47 193.0 388 35.1
Lj2g0005885 Lotus japonicus HOM05D001639 ORTHO05D004140 1.3e-45 188.0 378 37.3
unitig_736.g22511 Utricularia gibba HOM05D001639 ORTHO05D004140 3.9e-45 186.4 397 36.5
Actinidia13005 Actinidia chinensis HOM05D001639 ORTHO05D004140 9.0e-42 175.3 157 58.0
CDE02G2748 Ceratophyllum demersum HOM05D001639 ORTHO05D004140 2.3e-37 160.6 400 33.2
HPP92_019720 Vanilla planifolia HOM05D001639 ORTHO05D004140 5.3e-34 149.4 369 33.6
HPP92_019724 Vanilla planifolia HOM05D001639 ORTHO05D004140 1.5e-33 147.9 368 32.9
CDE08G1518 Ceratophyllum demersum HOM05D001639 ORTHO05D004140 8.5e-32 142.1 396 31.1
unitig_37.g12289 Utricularia gibba HOM05D001639 ORTHO05D004140 2.7e-30 137.1 176 47.7
CDE09G1351 Ceratophyllum demersum HOM05D001639 ORTHO05D004140 1.0e-21 108.6 118 51.7
SEGI_10205 Sequoiadendron giganteum HOM05D001639 ORTHO05D004140 1.4e-21 108.2 411 27.5
Zm00001eb163150 Zea mays HOM05D001639 ORTHO05D004140 1.4e-21 108.2 149 46.3
Lalb_Chr21g0305961 Lupinus albus HOM05D001639 ORTHO05D239808 8.2e-19 99.0 116 50.0
Hund19336 Selenicereus undatus HOM05D001639 ORTHO05D004140 2.6e-17 94.0 94 59.6
Lsat_1_v5_gn_5_52401 Lactuca sativa HOM05D001639 ORTHO05D004140 2.5e-15 87.4 59 76.3
arahy.Tifrunner.gnm1.ann1.Q3J83G Arachis hypogaea HOM05D001639 ORTHO05D004140 7.2e-15 85.9 221 31.7
arahy.Tifrunner.gnm1.ann1.5403MX Arachis hypogaea HOM05D001639 ORTHO05D004140 1.2e-14 85.1 184 35.9
SalBow3G3093 Salvia bowleyana HOM05D001639 ORTHO05D360597 8.8e-13 79.0 174 37.4
SalBow3G2660 Salvia bowleyana HOM05D001639 ORTHO05D356517 5.7e-12 76.3 174 36.8
DCAR_002967 Daucus carota HOM05D001639 ORTHO05D004140 6.3e-11 72.8 220 28.2
Pp3c11_8770 Physcomitrium patens HOM05D001639 ORTHO05D004140 2.6e-09 67.4 114 43.9
Pp3c7_16780 Physcomitrium patens HOM05D001639 ORTHO05D004140 2.2e-08 64.3 114 43.0
Os12g0103000 Oryza sativa ssp. japonica HOM05D001639 ORTHO05D004140 8.5e-08 62.4 68 60.3
Os11g0103700 Oryza sativa ssp. japonica HOM05D001639 ORTHO05D004140 1.1e-07 62.0 129 39.5
Lalb_Chr06g0162161 Lupinus albus HOM05D001639 ORTHO05D004140 5.5e-07 59.7 55 56.4
VMungo0540G2327 Vigna mungo HOM05D001639 ORTHO05D005318 1.2e-06 58.5 42 66.7
AagrBONN_evm.TU.Sc2ySwM_228.2641 Anthoceros agrestis HOM05D001639 ORTHO05D004140 1.6e-06 58.2 107 36.4


User provided reference genes

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