Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0019733 Camellia sinensis var. sinensis HOM05D001568 ORTHO05D004404 6.8e-25 116.7 66 100.0
Potri.009G085800 Populus trichocarpa HOM05D001568 ORTHO05D004404 3.1e-22 107.8 66 90.9
CSS0000365 Camellia sinensis var. sinensis HOM05D001568 ORTHO05D004404 5.4e-22 107.1 67 94.0
TWI59G0092 Tripterygium wilfordii HOM05D001568 ORTHO05D004404 3.5e-21 104.4 67 89.6
Hma1.2p1_1051F.1_g252100 Hydrangea macrophylla HOM05D001568 ORTHO05D004404 5.9e-21 103.6 66 90.9
Hma1.2p1_2793F.1_g328635 Hydrangea macrophylla HOM05D001568 ORTHO05D004404 5.9e-21 103.6 66 90.9
CiPaw.05G020400 Carya illinoinensis HOM05D001568 ORTHO05D004404 1.0e-20 102.8 66 86.4
Hma1.2p1_0661F.1_g198120 Hydrangea macrophylla HOM05D001568 ORTHO05D004404 1.7e-20 102.1 66 86.4
Manes.10G086400 Manihot esculenta HOM05D001568 ORTHO05D004404 1.7e-20 102.1 66 89.4
Potri.001G290200 Populus trichocarpa HOM05D001568 ORTHO05D004404 1.7e-20 102.1 66 89.4
Sed0001915 Sechium edule HOM05D001568 ORTHO05D004404 1.7e-20 102.1 66 86.4
TAR625G0364 Trochodendron aralioides HOM05D001568 ORTHO05D004404 1.7e-20 102.1 66 89.4
Aqoxy6G02530 Aquilegia oxysepala HOM05D001568 ORTHO05D004404 2.3e-20 101.7 64 84.4
Dinv09541 Davidia involucrata HOM05D001568 ORTHO05D008804 2.9e-20 101.3 66 87.9
COL.COLO4_32490 Corchorus olitorius HOM05D001568 ORTHO05D004404 3.8e-20 100.9 68 88.2
FAN15G0246 Fragaria x ananassa HOM05D001568 ORTHO05D004404 3.8e-20 100.9 66 84.8
Oeu021354.1 Olea europaea HOM05D001568 ORTHO05D004404 3.8e-20 100.9 66 87.9
Nn5g30644 Nelumbo nucifera HOM05D001568 ORTHO05D004404 5.0e-20 100.5 66 87.9
Rhsim05G0092200 Rhododendron simsii HOM05D001568 ORTHO05D004404 5.0e-20 100.5 71 84.5
RhsimUnG0183600 Rhododendron simsii HOM05D001568 ORTHO05D004404 5.0e-20 100.5 71 84.5
Duzib132G0295 Durio zibethinus HOM05D001568 ORTHO05D004404 1.1e-19 99.4 66 86.4
Oeu037288.1 Olea europaea HOM05D001568 ORTHO05D004404 1.1e-19 99.4 64 87.5
Ciclev10029760m.g Citrus clementina HOM05D001568 ORTHO05D004404 1.5e-19 99.0 67 85.1
SGA_v2.0_scaffold225G43060 Striga asiatica HOM05D001568 ORTHO05D008804 1.5e-19 99.0 64 87.5
TAR376G0823 Trochodendron aralioides HOM05D001568 ORTHO05D004404 1.5e-19 99.0 66 84.8
Prupe.8G149100 Prunus persica HOM05D001568 ORTHO05D004404 1.9e-19 98.6 64 84.4
Haze_10310 Corylus avellana HOM05D001568 ORTHO05D004404 2.5e-19 98.2 66 80.3
Manes.07G057600 Manihot esculenta HOM05D001568 ORTHO05D004404 2.5e-19 98.2 66 84.8
Nn6g34513 Nelumbo nucifera HOM05D001568 ORTHO05D004404 3.3e-19 97.8 66 86.4
Thecc.02G119400 Theobroma cacao HOM05D001568 ORTHO05D004404 3.3e-19 97.8 64 89.1
CAN.G606.68 Capsicum annuum HOM05D001568 ORTHO05D004404 4.2e-19 97.4 66 84.8
MELO3C018020.2 Cucumis melo HOM05D001568 ORTHO05D004404 4.2e-19 97.4 66 87.9
FAN24G1537 Fragaria x ananassa HOM05D001568 ORTHO05D004404 5.5e-19 97.1 66 81.8
Gohir.D02G203199 Gossypium hirsutum HOM05D001568 ORTHO05D004404 5.5e-19 97.1 68 83.8
Cpa.g.sc106.34 Carica papaya HOM05D001568 ORTHO05D004404 9.5e-19 96.3 66 84.8
CsaV3_4G000120 Cucumis sativus L. HOM05D001568 ORTHO05D004404 9.5e-19 96.3 66 86.4
RcHm_v2.0_Chr6g0248611 Rosa chinensis HOM05D001568 ORTHO05D004404 9.5e-19 96.3 66 83.3
TAR628G0963 Trochodendron aralioides HOM05D001568 ORTHO05D004404 9.5e-19 96.3 66 84.8
CANSAT25G0020 Cannabis sativa HOM05D001568 ORTHO05D004404 1.2e-18 95.9 67 83.6
Gohir.A13G047600 Gossypium hirsutum HOM05D001568 ORTHO05D004404 1.2e-18 95.9 67 85.1
Gohir.D13G045900 Gossypium hirsutum HOM05D001568 ORTHO05D004404 1.2e-18 95.9 67 85.1
PSO017G7292 Papaver somniferum HOM05D001568 ORTHO05D004404 1.2e-18 95.9 65 81.5
PSO170G4708 Papaver somniferum HOM05D001568 ORTHO05D004404 1.2e-18 95.9 65 81.5
Nitab4.5_0001099g0080 Nicotiana tabacum HOM05D001568 ORTHO05D004404 1.6e-18 95.5 66 83.3
FvH4_2g03450 Fragaria vesca HOM05D001568 ORTHO05D004404 2.1e-18 95.1 62 83.9
Gorai.013G051400 Gossypium raimondii HOM05D001568 ORTHO05D004404 2.1e-18 95.1 67 83.6
Sed0007286 Sechium edule HOM05D001568 ORTHO05D004404 2.1e-18 95.1 67 82.1
MD10G1109000 Malus domestica HOM05D001568 ORTHO05D004404 2.8e-18 94.7 64 81.2
Actinidia27997 Actinidia chinensis HOM05D001568 ORTHO05D004404 3.6e-18 94.4 68 82.4
Duzib052G0823 Durio zibethinus HOM05D001568 ORTHO05D004404 3.6e-18 94.4 66 83.3
Gohir.A03G181200 Gossypium hirsutum HOM05D001568 ORTHO05D004404 3.6e-18 94.4 68 82.4
MD05G1104700 Malus domestica HOM05D001568 ORTHO05D004404 3.6e-18 94.4 64 81.2
Peaxi162Scf00016g03013 Petunia axillaris HOM05D001568 ORTHO05D004404 3.6e-18 94.4 61 88.5
Migut.B00459 Erythranthe guttata HOM05D001568 ORTHO05D004404 4.7e-18 94.0 65 80.0
Cc00_g17980 Coffea canephora HOM05D001568 ORTHO05D004404 6.1e-18 93.6 67 80.6
PGSC0003DMG400025934 Solanum tuberosum HOM05D001568 ORTHO05D004404 1.0e-17 92.8 66 78.8
SalBow6G5155 Salvia bowleyana HOM05D001568 ORTHO05D004404 1.8e-17 92.0 66 81.8
ClCG10G010080 Citrullus lanatus HOM05D001568 ORTHO05D004404 2.3e-17 91.7 65 83.1
QL11p029492 Quercus lobata HOM05D001568 ORTHO05D004404 2.3e-17 91.7 61 85.2
Solyc01g106890.2 Solanum lycopersicum HOM05D001568 ORTHO05D004404 5.2e-17 90.5 66 75.8
Sopen01g049170 Solanum pennellii HOM05D001568 ORTHO05D004404 5.2e-17 90.5 66 75.8
Aa31LG8G6440 Aethionema arabicum HOM05D001568 ORTHO05D004404 6.8e-17 90.1 66 72.7
PGSC0003DMG400012835 Solanum tuberosum HOM05D001568 ORTHO05D004404 6.8e-17 90.1 64 78.1
Gorai.005G230000 Gossypium raimondii HOM05D001568 ORTHO05D004404 8.9e-17 89.7 64 81.2
Nitab4.5_0001458g0030 Nicotiana tabacum HOM05D001568 ORTHO05D004404 8.9e-17 89.7 61 83.6
SHI05029 Sapria himalayana HOM05D001568 ORTHO05D004404 1.5e-16 89.0 64 79.7
Peaxi162Scf00003g02832 Petunia axillaris HOM05D001568 ORTHO05D004404 2.0e-16 88.6 62 80.6
THA.LOC104803443 Tarenaya hassleriana HOM05D001568 ORTHO05D004404 4.4e-16 87.4 70 72.9
Atru.chr5.2306 Acer truncatum HOM05D001568 ORTHO05D004404 7.5e-16 86.7 62 80.6
Actinidia34354 Actinidia chinensis HOM05D001568 ORTHO05D004404 9.8e-16 86.3 60 86.7
Psat0s6663g0040 Pisum sativum HOM05D001568 ORTHO05D004404 3.7e-15 84.3 67 74.6
Lj1g0010962 Lotus japonicus HOM05D001568 ORTHO05D004404 6.3e-15 83.6 64 78.1
PGR142G4268 Punica granatum HOM05D001568 ORTHO05D004404 6.3e-15 83.6 65 73.8
Lsat_1_v5_gn_9_113420 Lactuca sativa HOM05D001568 ORTHO05D004404 8.3e-15 83.2 65 70.8
Aqoxy1G00264 Aquilegia oxysepala HOM05D001568 ORTHO05D004404 1.1e-14 82.8 61 65.6
Aqoxy335s003 Aquilegia oxysepala HOM05D001568 ORTHO05D004404 1.1e-14 82.8 61 65.6
AUR62027022 Chenopodium quinoa HOM05D001568 ORTHO05D004404 1.1e-14 82.8 66 72.7
AL3G33100 Arabidopsis lyrata HOM05D001568 ORTHO05D004404 1.4e-14 82.4 64 71.9
A01p35050 Brassica napus HOM05D001568 ORTHO05D004404 1.8e-14 82.0 66 63.6
BraA01t03586Z Brassica rapa HOM05D001568 ORTHO05D004404 1.8e-14 82.0 66 63.6
Carub.0003s1953 Capsella rubella HOM05D001568 ORTHO05D004404 1.8e-14 82.0 64 71.9
A05p29940 Brassica napus HOM05D001568 ORTHO05D004404 2.4e-14 81.6 64 68.8
BraA05t21839Z Brassica rapa HOM05D001568 ORTHO05D004404 2.4e-14 81.6 64 68.8
BcaC05g28437 Brassica carinata HOM05D001568 ORTHO05D004404 3.1e-14 81.3 64 68.8
C05p45170 Brassica napus HOM05D001568 ORTHO05D004404 3.1e-14 81.3 64 68.8
BolC5t33243H Brassica oleracea HOM05D001568 ORTHO05D004404 3.1e-14 81.3 64 68.8
AT3G19660 Arabidopsis thaliana HOM05D001568 ORTHO05D004404 1.2e-13 79.3 64 70.3
Glyma.01G241700 Glycine max HOM05D001568 ORTHO05D004404 1.6e-13 79.0 56 83.9
BcaB06g26036 Brassica carinata HOM05D001568 ORTHO05D004404 2.0e-13 78.6 65 67.7
TPR.G8320 Trifolium pratense HOM05D001568 ORTHO05D004404 2.0e-13 78.6 59 81.4
Medtr5g005330 Medicago truncatula HOM05D001568 ORTHO05D004404 3.5e-13 77.8 59 81.4
Sc08g0004350 Simmondsia chinensis HOM05D001568 ORTHO05D004404 3.5e-13 77.8 73 68.5
CARHR095120 Cardamine hirsuta HOM05D001568 ORTHO05D004404 7.8e-13 76.6 64 67.2
DCAR_021945 Daucus carota HOM05D001568 ORTHO05D004404 7.8e-13 76.6 58 79.3
Phvul.002G051000 Phaseolus vulgaris HOM05D001568 ORTHO05D004404 7.8e-13 76.6 52 86.5
AUR62030863 Chenopodium quinoa HOM05D001568 ORTHO05D004404 2.9e-12 74.7 67 67.2
EL10Ac9g22181 Beta vulgaris HOM05D001568 ORTHO05D004404 7.3e-11 70.1 62 71.0
Lalb_Chr02g0144911 Lupinus albus HOM05D001568 ORTHO05D004404 3.6e-10 67.8 63 65.1
Prupe.3G242600 Prunus persica HOM05D001568 ORTHO05D004404 6.1e-10 67.0 65 60.0
Manes.02G064800 Manihot esculenta HOM05D001568 ORTHO05D004404 1.4e-09 65.9 59 64.4
Nitab4.5_0010145g0040 Nicotiana tabacum HOM05D001568 ORTHO05D004404 1.8e-09 65.5 45 84.4
Phvul.008G021300 Phaseolus vulgaris HOM05D001568 ORTHO05D004404 4.0e-09 64.3 61 60.7
Glyma.18G279700 Glycine max HOM05D001568 ORTHO05D004404 5.2e-09 63.9 61 60.7
VMungo1215G2526 Vigna mungo HOM05D001946 ORTHO05D002111 6.8e-09 63.5 62 67.7
Manes.01G107200 Manihot esculenta HOM05D001568 ORTHO05D004404 8.9e-09 63.2 63 58.7
Potri.017G109900 Populus trichocarpa HOM05D001568 ORTHO05D004404 8.9e-09 63.2 63 57.1
QL02p053549 Quercus lobata HOM05D001568 ORTHO05D004404 1.5e-08 62.4 60 58.3
CSS0005518 Camellia sinensis var. sinensis HOM05D001568 ORTHO05D004404 2.0e-08 62.0 61 59.0
CSS0039733 Camellia sinensis var. sinensis HOM05D001568 ORTHO05D004404 2.0e-08 62.0 61 59.0
Eucgr.I02108 Eucalyptus grandis HOM05D001568 ORTHO05D004404 2.0e-08 62.0 61 60.7
Nn3g17638 Nelumbo nucifera HOM05D001568 ORTHO05D004404 2.0e-08 62.0 59 61.0
Migut.H00549 Erythranthe guttata HOM05D001568 ORTHO05D004404 2.6e-08 61.6 61 57.4
Sabra17G0091900 Salix brachista HOM05D001568 ORTHO05D004404 3.4e-08 61.2 63 55.6
TAR622G0735 Trochodendron aralioides HOM05D000764 ORTHO05D002006 4.4e-08 60.8 59 61.0
CiPaw.04G004300 Carya illinoinensis HOM05D001568 ORTHO05D004404 5.8e-08 60.5 53 64.2
Hma1.2p1_0588F.1_g184400 Hydrangea macrophylla HOM05D001568 ORTHO05D004404 5.8e-08 60.5 59 57.6
TAR371G0241 Trochodendron aralioides HOM05D001568 ORTHO05D004404 5.8e-08 60.5 55 63.6
EL10Ac9g22180 Beta vulgaris HOM05D001568 ORTHO05D004404 7.5e-08 60.1 76 53.9
Gohir.D07G077600 Gossypium hirsutum HOM05D001568 ORTHO05D004404 7.5e-08 60.1 65 56.9
Gorai.001G082100 Gossypium raimondii HOM05D001568 ORTHO05D004404 7.5e-08 60.1 65 56.9
Medtr7g019160 Medicago truncatula HOM05D001568 ORTHO05D004404 7.5e-08 60.1 61 55.7
Lj1g0007549 Lotus japonicus HOM05D001568 ORTHO05D004404 9.8e-08 59.7 59 57.6
Glyma.19G042000 Glycine max HOM05D001568 ORTHO05D004404 1.3e-07 59.3 61 54.1
Medtr6g016890 Medicago truncatula HOM05D001568 ORTHO05D004404 1.3e-07 59.3 60 56.7
TAR629G2968 Trochodendron aralioides HOM05D001568 ORTHO05D004404 1.7e-07 58.9 59 59.3
COL.COLO4_08509 Corchorus olitorius HOM05D001568 ORTHO05D004404 2.2e-07 58.5 56 62.5
Glyma.13G049300 Glycine max HOM05D001568 ORTHO05D004404 2.2e-07 58.5 55 60.0
Phvul.004G048600 Phaseolus vulgaris HOM05D001568 ORTHO05D004404 2.9e-07 58.2 55 60.0
Potri.017G109800 Populus trichocarpa HOM05D001568 ORTHO05D004404 3.7e-07 57.8 59 55.9
TPR.G3300 Trifolium pratense HOM05D001568 ORTHO05D004404 4.9e-07 57.4 55 56.4
Gohir.A07G073000 Gossypium hirsutum HOM05D001568 ORTHO05D004404 6.4e-07 57.0 65 53.8
FAN14G3562 Fragaria x ananassa HOM05D001568 ORTHO05D004404 8.3e-07 56.6 63 54.0
Atru.chr8.777 Acer truncatum HOM05D001568 ORTHO05D004404 1.1e-06 56.2 60 51.7
Lalb_Chr10g0092401 Lupinus albus HOM05D001568 ORTHO05D004404 1.1e-06 56.2 53 62.3
FvH4_6g45650 Fragaria vesca HOM05D001568 ORTHO05D004404 1.4e-06 55.8 61 55.7
RcHm_v2.0_Chr2g0163791 Rosa chinensis HOM05D001568 ORTHO05D004404 1.4e-06 55.8 62 54.8
AUR62008943 Chenopodium quinoa HOM05D001568 ORTHO05D004404 1.9e-06 55.5 62 51.6
Thecc.04G144700 Theobroma cacao HOM05D001568 ORTHO05D004404 1.9e-06 55.5 59 54.2
Lalb_Chr17g0336571 Lupinus albus HOM05D001568 ORTHO05D004404 2.4e-06 55.1 61 54.1
THA.LOC104822692 Tarenaya hassleriana HOM05D001568 ORTHO05D004404 2.4e-06 55.1 62 48.4
SalBow6G2712 Salvia bowleyana HOM05D008947 ORTHO05D010748 3.2e-06 54.7 38 86.8
FAN05G3918 Fragaria x ananassa HOM05D001568 ORTHO05D004404 4.1e-06 54.3 63 52.4
Potri.004G105900 Populus trichocarpa HOM05D001568 ORTHO05D004404 9.2e-06 53.1 59 54.2
SalBow1G1780 Salvia bowleyana HOM05D001568 ORTHO05D004404 9.2e-06 53.1 61 54.1
SalBow1G7911 Salvia bowleyana HOM05D001568 ORTHO05D004404 9.2e-06 53.1 61 54.1


User provided reference genes

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