Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0019701 Camellia sinensis var. sinensis HOM05D006000 ORTHO05D007749 0.0e+00 1322.8 649 100.0
CSS0006429 Camellia sinensis var. sinensis HOM05D006000 ORTHO05D007749 0.0e+00 1308.1 649 98.9
vmacro16696 Vaccinium macrocarpon HOM05D006000 ORTHO05D007749 3.2e-300 1034.6 650 79.1
Lj9C473G6 Lonicera japonica HOM05D006000 ORTHO05D007749 9.2e-284 979.9 653 75.3
GSVIVG01007577001 Vitis vinifera HOM05D006000 ORTHO05D007749 1.1e-279 966.5 651 73.4
Rhsim12G0171000 Rhododendron simsii HOM05D006000 ORTHO05D007749 3.2e-276 954.9 614 77.0
MD14G1166100 Malus domestica HOM05D006000 ORTHO05D007749 2.6e-270 935.3 657 70.5
MD06G1160100 Malus domestica HOM05D006000 ORTHO05D007749 4.4e-270 934.5 657 69.9
Prupe.5G160400 Prunus persica HOM05D006000 ORTHO05D007749 8.4e-269 930.2 657 70.9
Cfa018908 Carpinus fangiana HOM05D006000 ORTHO05D007749 1.2e-267 926.4 656 69.8
TAR622G0802 Trochodendron aralioides HOM05D006000 ORTHO05D007749 6.2e-264 914.1 657 68.2
Haze_07292 Corylus avellana HOM05D006000 ORTHO05D007749 4.0e-263 911.4 685 67.6
Nitab4.5_0001360g0160 Nicotiana tabacum HOM05D006000 ORTHO05D007749 7.6e-262 907.1 653 68.3
QL10p005632 Quercus lobata HOM05D006000 ORTHO05D007749 7.6e-262 907.1 652 69.3
Nitab4.5_0006717g0030 Nicotiana tabacum HOM05D006000 ORTHO05D007749 1.3e-261 906.4 653 67.7
PGSC0003DMG400015231 Solanum tuberosum HOM05D006000 ORTHO05D007749 2.2e-261 905.6 653 67.7
Manes.06G113400 Manihot esculenta HOM05D006000 ORTHO05D007749 3.2e-260 901.7 658 67.5
TWI39G0152 Tripterygium wilfordii HOM05D006000 ORTHO05D007749 9.3e-260 900.2 658 67.6
RcHm_v2.0_Chr7g0191691 Rosa chinensis HOM05D006000 ORTHO05D007749 2.3e-258 895.6 652 68.7
CANSAT80G1864 Cannabis sativa HOM05D006000 ORTHO05D007749 6.6e-258 894.0 654 66.8
Sopen03g030780 Solanum pennellii HOM05D006000 ORTHO05D007749 1.9e-257 892.5 653 67.1
Oeu053502.2 Olea europaea HOM05D006000 ORTHO05D007749 7.3e-257 890.6 657 68.0
Solyc03g111660.3 Solanum lycopersicum HOM05D006000 ORTHO05D007749 9.6e-257 890.2 654 66.7
Hund05620 Selenicereus undatus HOM05D006000 ORTHO05D007749 2.8e-256 888.6 651 66.8
CAN.G472.50 Capsicum annuum HOM05D006000 ORTHO05D007749 3.6e-256 888.3 653 66.5
Migut.D02037 Erythranthe guttata HOM05D006000 ORTHO05D007749 4.8e-256 887.9 654 67.9
Peaxi162Scf00089g00935 Petunia axillaris HOM05D006000 ORTHO05D007749 1.4e-255 886.3 652 66.7
EL10Ac7g18048 Beta vulgaris HOM05D006000 ORTHO05D007749 1.1e-252 876.7 654 65.7
HanXRQChr05g0156141 Helianthus annuus HOM05D006000 ORTHO05D007749 1.4e-252 876.3 646 68.0
ECA246G4586 Erigeron canadensis HOM05D006000 ORTHO05D007749 3.2e-252 875.2 659 67.1
ClCG03G003330 Citrullus lanatus HOM05D006000 ORTHO05D007749 3.0e-250 868.6 658 65.8
Gorai.003G108600 Gossypium raimondii HOM05D006000 ORTHO05D007749 1.5e-249 866.3 654 64.8
Lsat_1_v5_gn_5_13060 Lactuca sativa HOM05D006000 ORTHO05D007749 1.5e-249 866.3 648 66.5
Gohir.A03G063200 Gossypium hirsutum HOM05D006000 ORTHO05D007749 5.6e-249 864.4 655 64.7
Cc04_g10700 Coffea canephora HOM05D006000 ORTHO05D007749 2.8e-248 862.1 660 64.4
FvH4_5g06990 Fragaria vesca HOM05D006000 ORTHO05D007749 1.1e-247 860.1 657 65.6
Sed0018918 Sechium edule HOM05D006000 ORTHO05D007749 1.8e-247 859.4 658 65.2
FAN18G3028 Fragaria x ananassa HOM05D006000 ORTHO05D007749 2.4e-247 859.0 654 65.7
THA.LOC104818202 Tarenaya hassleriana HOM05D006000 ORTHO05D007749 6.9e-247 857.4 652 65.5
MSTRG.4336 Avicennia marina HOM05D006000 ORTHO05D007749 9.0e-247 857.1 659 65.4
PSO782G4995 Papaver somniferum HOM05D006000 ORTHO05D007749 9.0e-247 857.1 651 64.8
AT3G48380 Arabidopsis thaliana HOM05D006000 ORTHO05D007749 2.0e-246 855.9 650 64.8
Ca_16102_v3 Cicer arietinum L. HOM05D006000 ORTHO05D007749 2.6e-246 855.5 651 65.6
Ca_30078_v3 Cicer arietinum L. HOM05D006000 ORTHO05D007749 2.6e-246 855.5 651 65.6
Eucgr.B00167 Eucalyptus grandis HOM05D006000 ORTHO05D007749 1.7e-245 852.8 651 65.1
Ciclev10024180m.g Citrus clementina HOM05D006000 ORTHO05D007749 2.2e-245 852.4 642 67.0
Thhalv10010185m.g Eutrema salsugineum HOM05D006000 ORTHO05D007749 4.9e-245 851.3 654 64.8
Psat5g139520 Pisum sativum HOM05D006000 ORTHO05D007749 4.9e-245 851.3 657 65.0
CARHR157150 Cardamine hirsuta HOM05D006000 ORTHO05D007749 1.1e-244 850.1 650 65.1
AL5G27780 Arabidopsis lyrata HOM05D006000 ORTHO05D007749 1.4e-244 849.7 650 64.8
AUR62001257 Chenopodium quinoa HOM05D006000 ORTHO05D007749 2.5e-244 849.0 658 63.8
Sc10g0010320 Simmondsia chinensis HOM05D006000 ORTHO05D007749 2.5e-244 849.0 657 64.8
FAN08G3509 Fragaria x ananassa HOM05D006000 ORTHO05D007749 4.2e-244 848.2 657 65.1
Carub.0005s1454 Capsella rubella HOM05D006000 ORTHO05D007749 3.5e-243 845.1 650 64.3
Sp5g13670 Schrenkiella parvula HOM05D006000 ORTHO05D007749 3.9e-242 841.6 651 64.4
CsaV3_1G009140 Cucumis sativus L. HOM05D006000 ORTHO05D007749 5.1e-242 841.3 649 64.9
Medtr3g075250 Medicago truncatula HOM05D006000 ORTHO05D007749 4.3e-241 838.2 660 64.5
BcaB01g00818 Brassica carinata HOM05D006000 ORTHO05D007749 7.4e-241 837.4 652 64.3
Aa31LG4G16970 Aethionema arabicum HOM05D006000 ORTHO05D007749 1.6e-240 836.3 650 64.2
Sabra15G0111200 Salix brachista HOM05D006000 ORTHO05D007749 2.1e-240 835.9 618 67.2
BcaC07g39322 Brassica carinata HOM05D006000 ORTHO05D007749 1.1e-239 833.6 650 64.0
PGR083G2177 Punica granatum HOM05D006000 ORTHO05D007749 1.2e-238 830.1 648 63.3
C08p23370 Brassica napus HOM05D006000 ORTHO05D007749 2.6e-238 828.9 651 63.9
Thecc.03G120400 Theobroma cacao HOM05D006000 ORTHO05D007749 2.6e-238 828.9 657 63.3
VMungo1309G2614 Vigna mungo HOM05D006000 ORTHO05D007749 2.6e-238 828.9 651 64.1
Phvul.009G170100 Phaseolus vulgaris HOM05D006000 ORTHO05D007749 3.4e-238 828.6 654 63.6
MELO3C002321.2 Cucumis melo HOM05D006000 ORTHO05D007749 1.3e-237 826.6 664 63.4
Glyma.04G191400 Glycine max HOM05D006000 ORTHO05D007749 2.5e-236 822.4 657 63.6
A06p19300 Brassica napus HOM05D006000 ORTHO05D007749 7.1e-236 820.8 652 63.5
Glyma.06G174400 Glycine max HOM05D006000 ORTHO05D007749 2.1e-235 819.3 657 62.6
arahy.Tifrunner.gnm1.ann1.9XY5HM Arachis hypogaea HOM05D006000 ORTHO05D007749 3.5e-235 818.5 650 63.8
BolC8t49966H Brassica oleracea HOM05D006000 ORTHO05D007749 4.6e-235 818.1 662 62.7
FAN04G1552 Fragaria x ananassa HOM05D006000 ORTHO05D007749 1.3e-234 816.6 654 64.5
Lalb_Chr11g0069771 Lupinus albus HOM05D006000 ORTHO05D007749 1.8e-234 816.2 636 65.3
Lj1g0007517 Lotus japonicus HOM05D006000 ORTHO05D007749 3.3e-233 812.0 657 62.9
arahy.Tifrunner.gnm1.ann1.1AQ6ST Arachis hypogaea HOM05D006000 ORTHO05D007749 9.7e-233 810.4 636 64.5
Gohir.D03G103100 Gossypium hirsutum HOM05D006000 ORTHO05D007749 3.7e-232 808.5 621 64.3
BraA06t25013Z Brassica rapa HOM05D006000 ORTHO05D007749 1.8e-231 806.2 663 61.8
Actinidia36773 Actinidia chinensis HOM05D006000 ORTHO05D007749 5.3e-231 804.7 582 72.2
CiPaw.12G034200 Carya illinoinensis HOM05D006000 ORTHO05D007749 4.2e-228 795.0 539 72.2
Ah.15g095430 Amaranthus hybridus HOM05D006000 ORTHO05D007749 1.8e-226 789.6 649 61.0
CDE09G0792 Ceratophyllum demersum HOM05D006000 ORTHO05D007749 1.3e-224 783.5 658 59.6
TPR.G38611 Trifolium pratense HOM05D006000 ORTHO05D007749 1.5e-217 760.0 701 57.8
ATR0824G112 Amborella trichopoda HOM05D006000 ORTHO05D007749 2.0e-217 759.6 647 58.1
Actinidia08849 Actinidia chinensis HOM05D006000 ORTHO05D007749 3.3e-217 758.8 620 64.7
HPP92_027096 Vanilla planifolia HOM05D006000 ORTHO05D007749 1.7e-216 756.5 650 56.5
Nn4g22511 Nelumbo nucifera HOM05D006000 ORTHO05D007749 1.8e-210 736.5 580 63.4
Dinv11120 Davidia involucrata HOM05D006000 ORTHO05D007749 6.7e-210 734.6 486 76.1
Os12g0285500 Oryza sativa ssp. japonica HOM05D006000 ORTHO05D007749 1.7e-200 703.4 648 55.1
HPP92_021434 Vanilla planifolia HOM05D006000 ORTHO05D007749 1.5e-188 663.7 586 55.1
SGA_v2.0_scaffold7G04178 Striga asiatica HOM05D006000 ORTHO05D007749 1.0e-186 657.5 668 52.4
Zm00001eb133430 Zea mays HOM05D006000 ORTHO05D007749 1.7e-181 640.2 690 50.4
Dinv12561 Davidia involucrata HOM05D006000 ORTHO05D007749 8.6e-181 637.9 593 58.3
Atru.chr9.985 Acer truncatum HOM05D006000 ORTHO05D007749 1.0e-178 630.9 513 62.8
Potri.015G088200 Populus trichocarpa HOM05D006000 ORTHO05D007749 8.9e-154 548.1 474 59.5
SalBow8G1380 Salvia bowleyana HOM05D006000 ORTHO05D007749 1.4e-151 540.8 556 53.6
Mapoly0004s0201 Marchantia polymorpha HOM05D006000 ORTHO05D007749 4.2e-143 512.7 657 43.1
SMO201G0062 Selaginella moellendorffii HOM05D006000 ORTHO05D007749 1.1e-135 488.0 644 43.8
Pp3c6_16550 Physcomitrium patens HOM05D006000 ORTHO05D007749 2.1e-131 473.8 631 41.7
DCAR_016428 Daucus carota HOM05D006000 ORTHO05D007749 6.9e-130 468.8 254 86.6
DCAR_016429 Daucus carota HOM05D006000 ORTHO05D007749 1.8e-114 417.5 426 51.9
CBR_g41805 Chara braunii HOM05D006000 ORTHO05D007749 4.5e-113 412.9 389 52.2
unitig_21.g20436 Utricularia gibba HOM05D006000 ORTHO05D007749 7.9e-102 375.6 483 44.5
Cpa.g.sc4.40 Carica papaya HOM05D006000 ORTHO05D007749 8.8e-101 372.1 364 54.1
AagrBONN_evm.TU.Sc2ySwM_362.2604 Anthoceros agrestis HOM05D006000 ORTHO05D007749 2.5e-95 354.0 635 37.0
unitig_21.g20435 Utricularia gibba HOM05D006000 ORTHO05D007749 1.6e-94 351.3 178 88.2
arahy.Tifrunner.gnm1.ann1.HVEI7F Arachis hypogaea HOM05D006000 ORTHO05D007749 6.1e-94 349.4 297 62.3
Cre03.g197900 Chlamydomonas reinhardtii HOM05D006000 ORTHO05D007749 8.0e-94 349.0 502 42.2
HPP92_021417 Vanilla planifolia HOM05D006000 ORTHO05D007749 1.7e-80 304.7 197 73.6
FvH4_5g06921 Fragaria vesca HOM05D006000 ORTHO05D007749 3.2e-58 230.7 271 44.3
Cpa.g.sc4.27 Carica papaya HOM05D006000 ORTHO05D008793 3.9e-56 223.8 170 65.3
SalBow8G5300 Salvia bowleyana HOM05D006000 ORTHO05D007749 3.9e-56 223.8 104 96.2
Cpa.g.sc4.41 Carica papaya HOM05D006000 ORTHO05D007749 8.1e-54 216.1 106 88.7
FvH4_5g06950 Fragaria vesca HOM05D006000 ORTHO05D007749 2.3e-45 188.0 219 42.9
arahy.Tifrunner.gnm1.ann1.1X7LEL Arachis hypogaea HOM05D000074 ORTHO05D007749 8.6e-40 169.5 492 30.7
PRCOL_00005175 Prasinoderma coloniale HOM05D006000 ORTHO05D007749 9.9e-36 156.0 200 42.0
SMO201G0174 Selaginella moellendorffii HOM05D006000 ORTHO05D007749 2.2e-35 154.8 202 44.6
FvH4_5g06930 Fragaria vesca HOM05D006000 ORTHO05D007749 6.4e-35 153.3 137 60.6
TAR622G0554 Trochodendron aralioides HOM05D006000 ORTHO05D007749 1.6e-30 138.7 153 52.3
CAN.G546.38 Capsicum annuum HOM05D006000 ORTHO05D007749 1.7e-27 128.6 68 86.8
SGA_v2.0_scaffold115G32113 Striga asiatica HOM05D005956 ORTHO05D007197 3.8e-27 127.5 58 91.4
SMO328G0007 Selaginella moellendorffii HOM05D006000 ORTHO05D007749 2.3e-24 118.2 83 66.3
Nitab4.5_0001094g0140 Nicotiana tabacum HOM05D006000 ORTHO05D007749 3.7e-22 110.9 100 54.0
FvH4_5g06922 Fragaria vesca HOM05D006000 ORTHO05D007749 6.2e-22 110.2 74 70.3
arahy.Tifrunner.gnm1.ann1.0Z5YS0 Arachis hypogaea HOM05D001248 ORTHO05D007749 4.9e-19 100.5 72 65.3
Lsat_1_v5_gn_4_166800 Lactuca sativa HOM05D006000 ORTHO05D018009 2.3e-16 91.7 78 60.3
Lsat_1_v5_gn_3_61521 Lactuca sativa HOM05D006000 ORTHO05D018009 3.9e-16 90.9 78 60.3
Lsat_1_v5_gn_4_154121 Lactuca sativa HOM05D006000 ORTHO05D018009 5.1e-16 90.5 78 59.0
Lsat_1_v5_gn_2_53660 Lactuca sativa HOM05D003480 ORTHO05D018009 1.9e-15 88.6 78 59.0
Lsat_1_v5_gn_4_114361 Lactuca sativa HOM05D003480 ORTHO05D018009 2.5e-15 88.2 78 57.7
Lsat_1_v5_gn_6_19961 Lactuca sativa HOM05D003480 ORTHO05D018009 1.6e-14 85.5 78 57.7
CAN.G1014.24 Capsicum annuum HOM05D000846 ORTHO05D028464 3.8e-11 74.3 75 54.7
CAN.G755.4 Capsicum annuum HOM05D006000 ORTHO05D028464 3.8e-11 74.3 75 53.3
SEGI_38992 Sequoiadendron giganteum HOM05D006000 ORTHO05D007749 6.0e-09 67.0 128 29.7
arahy.Tifrunner.gnm1.ann1.XFG60B Arachis hypogaea HOM05D006000 ORTHO05D007749 3.0e-08 64.7 99 42.4
arahy.Tifrunner.gnm1.ann1.L5KNWH Arachis hypogaea HOM05D006000 ORTHO05D007749 8.7e-08 63.2 99 40.4


User provided reference genes

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