Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0019680 Camellia sinensis var. sinensis HOM05D008198 ORTHO05D010220 7.5e-52 207.2 130 100.0
Thecc.02G006400 Theobroma cacao HOM05D008198 ORTHO05D010220 1.9e-18 96.3 72 66.7
Glyma.05G131701 Glycine max HOM05D008198 ORTHO05D010220 3.2e-18 95.5 73 63.0
Potri.001G123300 Populus trichocarpa HOM05D008198 ORTHO05D010220 3.2e-18 95.5 69 68.1
VMungo0251G3138 Vigna mungo HOM05D008198 ORTHO05D010220 4.2e-18 95.1 73 61.6
CiPaw.09G074800 Carya illinoinensis HOM05D008198 ORTHO05D010220 1.2e-17 93.6 72 69.4
Haze_06107 Corylus avellana HOM05D008198 ORTHO05D010220 1.2e-17 93.6 73 63.0
Lj4g0024937 Lotus japonicus HOM05D008198 ORTHO05D010220 1.2e-17 93.6 72 68.1
Manes.03G073400 Manihot esculenta HOM05D008198 ORTHO05D010220 1.6e-17 93.2 74 64.9
QL11p013556 Quercus lobata HOM05D008198 ORTHO05D010220 2.1e-17 92.8 73 68.5
Gohir.D02G239700 Gossypium hirsutum HOM05D008198 ORTHO05D010220 4.6e-17 91.7 73 63.0
Sabra03G0076400 Salix brachista HOM05D008198 ORTHO05D010220 4.6e-17 91.7 69 68.1
Gorai.005G268000 Gossypium raimondii HOM05D008198 ORTHO05D010220 7.8e-17 90.9 71 64.8
Prupe.4G115000 Prunus persica HOM05D008198 ORTHO05D010220 1.3e-16 90.1 67 71.6
Lalb_Chr07g0188441 Lupinus albus HOM05D008198 ORTHO05D010220 1.7e-16 89.7 72 62.5
Sabra01G0095000 Salix brachista HOM05D008198 ORTHO05D010220 1.7e-16 89.7 69 65.2
RcHm_v2.0_Chr5g0020591 Rosa chinensis HOM05D008198 ORTHO05D010220 2.3e-16 89.4 69 68.1
Oeu058939.1 Olea europaea HOM05D008198 ORTHO05D010220 3.9e-16 88.6 73 64.4
Potri.003G110200 Populus trichocarpa HOM05D008198 ORTHO05D010220 5.1e-16 88.2 69 65.2
Glyma.08G086200 Glycine max HOM05D008198 ORTHO05D010220 8.7e-16 87.4 73 60.3
Gohir.A03G217600 Gossypium hirsutum HOM05D008198 ORTHO05D010220 8.7e-16 87.4 71 63.4
Ciclev10017172m.g Citrus clementina HOM05D008198 ORTHO05D010220 1.9e-15 86.3 66 63.6
Actinidia22419 Actinidia chinensis HOM05D008198 ORTHO05D010220 2.5e-15 85.9 66 65.2
Phvul.002G191200 Phaseolus vulgaris HOM05D008198 ORTHO05D010220 2.5e-15 85.9 71 59.2
Cfa000688 Carpinus fangiana HOM05D008198 ORTHO05D010220 3.3e-15 85.5 77 58.4
ClCG01G025660 Citrullus lanatus HOM05D008198 ORTHO05D010220 4.3e-15 85.1 73 60.3
FvH4_3g12620 Fragaria vesca HOM05D008198 ORTHO05D010220 4.3e-15 85.1 69 66.7
FAN21G2662 Fragaria x ananassa HOM05D008198 ORTHO05D010220 4.3e-15 85.1 69 65.2
MD10G1229700 Malus domestica HOM05D008198 ORTHO05D010220 4.3e-15 85.1 110 46.4
Duzib248G0575 Durio zibethinus HOM05D008198 ORTHO05D010220 5.6e-15 84.7 71 62.0
FAN25G2935 Fragaria x ananassa HOM05D008198 ORTHO05D010220 5.6e-15 84.7 69 66.7
TWI38G1073 Tripterygium wilfordii HOM05D008198 ORTHO05D010220 5.6e-15 84.7 71 64.8
Ca_18253_v3 Cicer arietinum L. HOM05D008198 ORTHO05D010220 9.6e-15 84.0 73 60.3
Eucgr.L01648 Eucalyptus grandis HOM05D008198 ORTHO05D010220 9.6e-15 84.0 69 62.3
MD05G1249200 Malus domestica HOM05D008198 ORTHO05D010220 1.3e-14 83.6 114 50.9
SalBow8G3784 Salvia bowleyana HOM05D008198 ORTHO05D010220 3.6e-14 82.0 65 67.7
Sopen02g017700 Solanum pennellii HOM05D008198 ORTHO05D010220 1.1e-13 80.5 81 56.8
CARHR226750 Cardamine hirsuta HOM05D008198 ORTHO05D010220 1.4e-13 80.1 68 60.3
Carub.0007s2117 Capsella rubella HOM05D008198 ORTHO05D010220 2.4e-13 79.3 90 46.7
COL.COLO4_17639 Corchorus olitorius HOM05D008198 ORTHO05D010220 3.1e-13 79.0 79 58.2
AT4G19980 Arabidopsis thaliana HOM05D008198 ORTHO05D010220 5.3e-13 78.2 74 54.1
Atru.chr10.441 Acer truncatum HOM05D008198 ORTHO05D010220 6.9e-13 77.8 68 61.8
PGSC0003DMG400010446 Solanum tuberosum HOM05D008198 ORTHO05D010220 9.0e-13 77.4 77 55.8
AL7G33930 Arabidopsis lyrata HOM05D008198 ORTHO05D010220 1.5e-12 76.6 67 61.2
CiPaw.10G063000 Carya illinoinensis HOM05D008198 ORTHO05D010220 2.0e-12 76.3 71 59.2
Dinv09067 Davidia involucrata HOM05D008198 ORTHO05D010220 2.0e-12 76.3 66 60.6
Nn7g38206 Nelumbo nucifera HOM05D008198 ORTHO05D010220 2.0e-12 76.3 114 41.2
Sed0017835 Sechium edule HOM05D008198 ORTHO05D010220 2.6e-12 75.9 84 50.0
A01p11780 Brassica napus HOM05D008198 ORTHO05D010220 3.4e-12 75.5 83 48.2
BraA01t01120Z Brassica rapa HOM05D008198 ORTHO05D010220 3.4e-12 75.5 83 48.2
TPR.G11001 Trifolium pratense HOM05D008198 ORTHO05D010220 4.4e-12 75.1 74 56.8
Sp7g18430 Schrenkiella parvula HOM05D008198 ORTHO05D010220 5.8e-12 74.7 68 58.8
SGA_v2.0_scaffold298G47697 Striga asiatica HOM05D008198 ORTHO05D010220 9.9e-12 73.9 76 53.9
Thhalv10026564m.g Eutrema salsugineum HOM05D008198 ORTHO05D010220 1.7e-11 73.2 68 52.9
Lalb_Chr04g0257791 Lupinus albus HOM05D008198 ORTHO05D010220 1.7e-11 73.2 70 55.7
BcaC09g51355 Brassica carinata HOM05D008198 ORTHO05D010220 2.2e-11 72.8 83 48.2
BcaNung01739 Brassica carinata HOM05D008198 ORTHO05D010220 2.2e-11 72.8 68 52.9
Psat7g089000 Pisum sativum HOM05D008198 ORTHO05D010220 3.8e-11 72.0 74 55.4
C03p82100 Brassica napus HOM05D008198 ORTHO05D010220 6.4e-11 71.2 70 51.4
BolC3t20547H Brassica oleracea HOM05D008198 ORTHO05D010220 6.4e-11 71.2 70 51.4
Migut.M01995 Erythranthe guttata HOM05D008198 ORTHO05D010220 8.4e-11 70.9 71 52.1
C01p13980 Brassica napus HOM05D008198 ORTHO05D010220 1.1e-10 70.5 83 47.0
BolC1t01365H Brassica oleracea HOM05D008198 ORTHO05D010220 1.1e-10 70.5 83 47.0
Medtr4g094640 Medicago truncatula HOM05D008198 ORTHO05D010220 1.1e-10 70.5 70 57.1
Aa31LG6G2390 Aethionema arabicum HOM05D008198 ORTHO05D010220 1.0e-08 63.9 77 45.5
Os06g0666800 Oryza sativa ssp. japonica HOM05D019633 ORTHO05D010220 8.7e-08 60.8 69 44.9
Cpa.g.sc30.141 Carica papaya HOM05D008198 ORTHO05D010220 1.9e-07 59.7 73 47.9


User provided reference genes

Program Settings