Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0019678 Camellia sinensis var. sinensis HOM05D004451 ORTHO05D005177 2.0e-156 555.8 303 100.0
Actinidia00412 Actinidia chinensis HOM05D004451 ORTHO05D005177 9.1e-117 424.1 303 80.5
Actinidia17478 Actinidia chinensis HOM05D004451 ORTHO05D005177 2.1e-113 412.9 304 80.3
vmacro19448 Vaccinium macrocarpon HOM05D004451 ORTHO05D005177 4.4e-111 405.2 305 78.4
Rhsim05G0088400 Rhododendron simsii HOM05D004451 ORTHO05D005177 6.3e-110 401.4 303 77.9
Hma1.2p1_0796F.1_g219180 Hydrangea macrophylla HOM05D004451 ORTHO05D005177 3.6e-105 385.6 303 73.9
CSS0044080 Camellia sinensis var. sinensis HOM05D004451 ORTHO05D005177 5.2e-104 381.7 305 77.0
CSS0017890 Camellia sinensis var. sinensis HOM05D004451 ORTHO05D005177 4.1e-101 372.1 308 74.4
Oeu018597.1 Olea europaea HOM05D004451 ORTHO05D005177 1.2e-100 370.5 303 73.3
Actinidia05493 Actinidia chinensis HOM05D004451 ORTHO05D005177 1.0e-99 367.5 301 71.1
Cc02_g19230 Coffea canephora HOM05D004451 ORTHO05D005177 1.3e-99 367.1 304 72.0
Oeu010397.1 Olea europaea HOM05D004451 ORTHO05D005177 3.2e-98 362.5 304 74.3
Thecc.02G107400 Theobroma cacao HOM05D004451 ORTHO05D005177 3.6e-97 359.0 303 70.0
GSVIVG01003161001 Vitis vinifera HOM05D004451 ORTHO05D005177 3.6e-97 359.0 303 71.6
SalBow6G6827 Salvia bowleyana HOM05D004451 ORTHO05D005177 4.7e-97 358.6 303 71.3
ECA234G3549 Erigeron canadensis HOM05D004451 ORTHO05D005177 5.2e-96 355.1 304 69.4
Prupe.8G134600 Prunus persica HOM05D004451 ORTHO05D005177 5.2e-96 355.1 310 69.0
TAR628G0195 Trochodendron aralioides HOM05D004451 ORTHO05D005177 6.8e-96 354.8 303 70.0
SGA_v2.0_scaffold32G13039 Striga asiatica HOM05D004451 ORTHO05D005177 8.8e-96 354.4 309 68.0
Atru.chr5.2587 Acer truncatum HOM05D004451 ORTHO05D005177 1.5e-95 353.6 307 70.0
MSTRG.20184 Avicennia marina HOM05D004451 ORTHO05D005177 2.6e-95 352.8 305 70.2
Dinv15761 Davidia involucrata HOM05D004451 ORTHO05D005177 4.4e-95 352.1 277 74.4
arahy.Tifrunner.gnm1.ann1.S5NBXN Arachis hypogaea HOM05D004451 ORTHO05D005177 7.5e-95 351.3 309 70.2
Migut.B00385 Erythranthe guttata HOM05D004451 ORTHO05D005177 7.5e-95 351.3 304 69.4
Manes.07G069100 Manihot esculenta HOM05D004451 ORTHO05D005177 9.8e-95 350.9 305 70.2
TWI79G0876 Tripterygium wilfordii HOM05D004451 ORTHO05D005177 2.8e-94 349.4 304 69.4
arahy.Tifrunner.gnm1.ann1.BMM90D Arachis hypogaea HOM05D004451 ORTHO05D005177 8.3e-94 347.8 306 70.6
Nn1g04705 Nelumbo nucifera HOM05D004451 ORTHO05D005177 8.3e-94 347.8 308 68.2
VMungo0720G2723 Vigna mungo HOM05D004451 ORTHO05D005177 1.1e-93 347.4 300 69.0
ClCG02G006310 Citrullus lanatus HOM05D004451 ORTHO05D005177 1.4e-93 347.1 309 69.6
TWI31G0226 Tripterygium wilfordii HOM05D004451 ORTHO05D005177 1.4e-93 347.1 304 70.4
TAR381G0562 Trochodendron aralioides HOM05D004451 ORTHO05D005177 2.4e-93 346.3 305 69.8
CANSAT25G0591 Cannabis sativa HOM05D004451 ORTHO05D005177 3.1e-93 345.9 306 70.3
CANSAT25G2876 Cannabis sativa HOM05D004451 ORTHO05D005177 3.1e-93 345.9 306 70.3
FAN20G1574 Fragaria x ananassa HOM05D004451 ORTHO05D005177 5.4e-93 345.1 303 67.3
COL.COLO4_32599 Corchorus olitorius HOM05D004451 ORTHO05D005177 9.2e-93 344.4 305 68.9
CsaV3_7G008120 Cucumis sativus L. HOM05D004451 ORTHO05D005177 9.2e-93 344.4 304 69.1
RcHm_v2.0_Chr6g0255371 Rosa chinensis HOM05D004451 ORTHO05D005177 9.2e-93 344.4 303 67.3
Gohir.A13G043700 Gossypium hirsutum HOM05D004451 ORTHO05D005177 1.2e-92 344.0 303 68.3
MD05G1088600 Malus domestica HOM05D004451 ORTHO05D005177 1.2e-92 344.0 303 68.6
Potri.009G096300 Populus trichocarpa HOM05D004451 ORTHO05D005177 1.6e-92 343.6 307 68.7
Cpa.g.sc106.89 Carica papaya HOM05D004451 ORTHO05D005177 2.0e-92 343.2 312 67.9
Gohir.D13G042200 Gossypium hirsutum HOM05D004451 ORTHO05D005177 2.7e-92 342.8 303 68.0
Phvul.007G040300 Phaseolus vulgaris HOM05D004451 ORTHO05D005177 3.5e-92 342.4 304 67.4
PGR142G3187 Punica granatum HOM05D004451 ORTHO05D005177 4.5e-92 342.0 303 68.3
Gorai.013G047100 Gossypium raimondii HOM05D004451 ORTHO05D005177 7.8e-92 341.3 303 67.7
FAN27G3473 Fragaria x ananassa HOM05D004451 ORTHO05D005177 6.6e-91 338.2 303 67.0
Lj5g0008999 Lotus japonicus HOM05D004451 ORTHO05D005177 6.6e-91 338.2 312 67.0
Nitab4.5_0002815g0090 Nicotiana tabacum HOM05D004451 ORTHO05D005177 8.6e-91 337.8 305 68.9
Duzib248G1610 Durio zibethinus HOM05D004451 ORTHO05D005177 1.1e-90 337.4 303 67.7
Potri.001G300500 Populus trichocarpa HOM05D004451 ORTHO05D005177 1.1e-90 337.4 309 66.7
Ciclev10029016m.g Citrus clementina HOM05D004451 ORTHO05D005177 2.5e-90 336.3 304 66.8
Glyma.20G129100 Glycine max HOM05D004451 ORTHO05D005177 2.5e-90 336.3 303 66.7
Duzib132G0413 Durio zibethinus HOM05D004451 ORTHO05D005177 3.3e-90 335.9 305 66.6
MELO3C018494.2 Cucumis melo HOM05D004451 ORTHO05D005177 5.6e-90 335.1 308 65.9
Glyma.10G261800 Glycine max HOM05D004451 ORTHO05D005177 7.3e-90 334.7 306 66.7
FvH4_2g05240 Fragaria vesca HOM05D004451 ORTHO05D005177 1.2e-89 334.0 303 67.0
MSTRG.16716 Avicennia marina HOM05D004451 ORTHO05D005177 1.6e-89 333.6 304 69.1
MD10G1096700 Malus domestica HOM05D004451 ORTHO05D005177 1.6e-89 333.6 303 66.3
Rhsim11G0160300 Rhododendron simsii HOM05D004451 ORTHO05D005177 2.1e-89 333.2 337 62.9
Gorai.005G235200 Gossypium raimondii HOM05D004451 ORTHO05D005177 2.8e-89 332.8 306 67.0
QL11p033916 Quercus lobata HOM05D004451 ORTHO05D005177 2.8e-89 332.8 305 66.6
FAN15G2242 Fragaria x ananassa HOM05D004451 ORTHO05D005177 3.6e-89 332.4 315 64.4
Gohir.A03G186500 Gossypium hirsutum HOM05D004451 ORTHO05D005177 6.1e-89 331.6 308 67.2
Sed0001090 Sechium edule HOM05D004451 ORTHO05D005177 6.1e-89 331.6 308 67.5
AUR62039084 Chenopodium quinoa HOM05D004451 ORTHO05D005177 1.0e-88 330.9 304 65.5
Lj9C321G12 Lonicera japonica HOM05D004451 ORTHO05D005177 1.0e-88 330.9 210 84.3
Cfa004574 Carpinus fangiana HOM05D004451 ORTHO05D005177 1.4e-88 330.5 307 67.4
Haze_10166 Corylus avellana HOM05D004451 ORTHO05D005177 2.3e-88 329.7 303 67.7
Lsat_1_v5_gn_5_114881 Lactuca sativa HOM05D004451 ORTHO05D005177 4.0e-88 328.9 306 66.7
Nitab4.5_0005392g0030 Nicotiana tabacum HOM05D004451 ORTHO05D005177 4.0e-88 328.9 298 68.8
Gohir.D02G207300 Gossypium hirsutum HOM05D004451 ORTHO05D005177 5.2e-88 328.6 304 66.8
AUR62010302 Chenopodium quinoa HOM05D004451 ORTHO05D005177 8.9e-88 327.8 311 64.0
HanXRQChr16g0514851 Helianthus annuus HOM05D004451 ORTHO05D005177 1.2e-87 327.4 304 66.1
Peaxi162Scf00016g02324 Petunia axillaris HOM05D004451 ORTHO05D005177 1.2e-87 327.4 304 66.1
FAN24G2858 Fragaria x ananassa HOM05D004451 ORTHO05D005177 2.0e-87 326.6 303 65.3
Manes.10G076300 Manihot esculenta HOM05D004451 ORTHO05D005177 2.0e-87 326.6 309 65.0
Hund06320 Selenicereus undatus HOM05D004451 ORTHO05D005177 2.6e-87 326.2 310 65.8
Lalb_Chr02g0145321 Lupinus albus HOM05D004451 ORTHO05D005177 5.7e-87 325.1 263 74.9
Sed0013348 Sechium edule HOM05D004451 ORTHO05D005177 5.7e-87 325.1 309 65.7
Medtr1g107450 Medicago truncatula HOM05D004451 ORTHO05D005177 7.5e-87 324.7 307 65.1
Ah.01g018220 Amaranthus hybridus HOM05D004451 ORTHO05D005177 2.2e-86 323.2 315 63.2
PGSC0003DMG400025865 Solanum tuberosum HOM05D004451 ORTHO05D005177 2.2e-86 323.2 304 65.1
Ca_11078_v3 Cicer arietinum L. HOM05D004451 ORTHO05D005177 6.4e-86 321.6 308 64.3
Solyc01g107640.3 Solanum lycopersicum HOM05D004451 ORTHO05D005177 8.3e-86 321.2 305 63.9
Aqoxy5G01146 Aquilegia oxysepala HOM05D004451 ORTHO05D005177 1.4e-85 320.5 286 67.1
Nn5g30419 Nelumbo nucifera HOM05D004451 ORTHO05D005177 1.4e-85 320.5 307 64.8
Lalb_Chr06g0165471 Lupinus albus HOM05D004451 ORTHO05D005177 1.8e-85 320.1 304 65.5
THA.LOC104819557 Tarenaya hassleriana HOM05D004451 ORTHO05D005177 1.8e-85 320.1 314 62.4
PSO210G2671 Papaver somniferum HOM05D004451 ORTHO05D005177 2.4e-85 319.7 307 62.5
CiPaw.05G011200 Carya illinoinensis HOM05D004451 ORTHO05D005177 3.2e-85 319.3 254 74.0
PSO170G0588 Papaver somniferum HOM05D004451 ORTHO05D005177 9.2e-85 317.8 304 62.5
vmacro19524 Vaccinium macrocarpon HOM05D004451 ORTHO05D005177 1.2e-84 317.4 349 59.9
CDE04G0259 Ceratophyllum demersum HOM05D004451 ORTHO05D005177 2.0e-84 316.6 200 82.0
Psat6g219200 Pisum sativum HOM05D004451 ORTHO05D005177 2.0e-84 316.6 260 70.4
Sopen01g049830 Solanum pennellii HOM05D004451 ORTHO05D005177 2.7e-84 316.2 306 63.7
EL10Ac9g22281 Beta vulgaris HOM05D004451 ORTHO05D005177 3.5e-84 315.8 307 62.2
SGA_v2.0_scaffold225G43078 Striga asiatica HOM05D004451 ORTHO05D005177 3.5e-84 315.8 300 64.7
CiPaw.06G169600 Carya illinoinensis HOM05D004451 ORTHO05D005177 1.0e-83 314.3 304 64.1
Sabra09G0074000 Salix brachista HOM05D004451 ORTHO05D005177 1.0e-83 314.3 363 58.1
Hund00148 Selenicereus undatus HOM05D004451 ORTHO05D005177 3.0e-83 312.8 311 61.7
Sp3g28570 Schrenkiella parvula HOM05D004451 ORTHO05D005177 1.9e-82 310.1 307 62.5
BcaB08g34587 Brassica carinata HOM05D004451 ORTHO05D005177 7.3e-82 308.1 306 62.4
BcaB07g31794 Brassica carinata HOM05D004451 ORTHO05D005177 1.2e-81 307.4 289 64.4
AT2G15290 Arabidopsis thaliana HOM05D004451 ORTHO05D005177 2.1e-81 306.6 307 61.9
A07p05320 Brassica napus HOM05D004451 ORTHO05D005177 2.1e-81 306.6 262 67.9
BraA07t28325Z Brassica rapa HOM05D004451 ORTHO05D005177 2.1e-81 306.6 262 67.9
DCAR_001641 Daucus carota HOM05D004451 ORTHO05D005177 2.1e-81 306.6 195 81.5
Thhalv10022775m.g Eutrema salsugineum HOM05D004451 ORTHO05D005177 2.8e-81 306.2 310 61.3
CARHR105660 Cardamine hirsuta HOM05D004451 ORTHO05D005177 3.6e-81 305.8 315 61.3
BcaC06g36051 Brassica carinata HOM05D004451 ORTHO05D005177 4.7e-81 305.4 307 62.2
BolC7t41261H Brassica oleracea HOM05D004451 ORTHO05D005177 4.7e-81 305.4 276 66.3
Eucgr.E02954 Eucalyptus grandis HOM05D004451 ORTHO05D005177 4.7e-81 305.4 304 64.1
Aa31LG8G13140 Aethionema arabicum HOM05D004451 ORTHO05D005177 6.2e-81 305.1 310 61.6
C07p08470 Brassica napus HOM05D004451 ORTHO05D005177 8.0e-81 304.7 276 66.3
HanXRQChr10g0292341 Helianthus annuus HOM05D004451 ORTHO05D005177 8.0e-81 304.7 274 64.6
A09p10690 Brassica napus HOM05D004451 ORTHO05D005177 1.4e-80 303.9 308 61.4
Carub.0003s2912 Capsella rubella HOM05D004451 ORTHO05D005177 1.8e-80 303.5 303 61.7
AL3G47010 Arabidopsis lyrata HOM05D004451 ORTHO05D005177 3.1e-80 302.8 303 61.7
BcaB03g16278 Brassica carinata HOM05D004451 ORTHO05D005177 3.1e-80 302.8 276 66.3
BolC9t54158H Brassica oleracea HOM05D004451 ORTHO05D005177 6.8e-80 301.6 309 61.5
Sabra16G0188700 Salix brachista HOM05D004451 ORTHO05D005177 1.2e-79 300.8 372 54.3
C09p12690 Brassica napus HOM05D004451 ORTHO05D005177 4.4e-79 298.9 280 65.7
BcaC06g31580 Brassica carinata HOM05D004451 ORTHO05D005177 1.4e-77 293.9 193 80.8
THA.LOC104807244 Tarenaya hassleriana HOM05D004451 ORTHO05D005177 7.0e-77 291.6 244 68.0
Sc17g0003020 Simmondsia chinensis HOM05D004451 ORTHO05D005177 7.8e-76 288.1 287 62.7
HPP92_004770 Vanilla planifolia HOM05D004451 ORTHO05D005177 1.1e-74 284.3 229 65.5
unitig_22.g5194 Utricularia gibba HOM05D004451 ORTHO05D005177 1.2e-73 280.8 308 57.5
SEGI_03021 Sequoiadendron giganteum HOM05D004451 ORTHO05D005177 6.2e-73 278.5 234 66.2
Pp3c27_4260 Physcomitrium patens HOM05D004451 ORTHO05D005177 2.6e-71 273.1 214 68.2
Zm00001eb206410 Zea mays HOM05D004451 ORTHO05D005177 3.4e-71 272.7 182 76.9
ATR0691G207 Amborella trichopoda HOM05D004451 ORTHO05D005177 2.2e-70 270.0 217 71.4
Os06g0638100 Oryza sativa ssp. japonica HOM05D004451 ORTHO05D005177 2.2e-70 270.0 301 55.8
Pp3c1_21740 Physcomitrium patens HOM05D004451 ORTHO05D005177 2.9e-70 269.6 201 71.1
Pp3c10_9500 Physcomitrium patens HOM05D004451 ORTHO05D005177 8.3e-70 268.1 202 68.8
Os02g0187600 Oryza sativa ssp. japonica HOM05D004451 ORTHO05D005177 4.1e-69 265.8 304 55.9
BraA09t36712Z Brassica rapa HOM05D004451 ORTHO05D005177 5.4e-69 265.4 353 51.8
DCAR_021989 Daucus carota HOM05D004451 ORTHO05D005177 3.5e-68 262.7 229 65.9
Zm00001eb387350 Zea mays HOM05D004451 ORTHO05D005177 4.6e-68 262.3 294 55.1
Mapoly0049s0087 Marchantia polymorpha HOM05D004451 ORTHO05D005177 1.0e-67 261.2 257 59.5
ECA240G4367 Erigeron canadensis HOM05D004451 ORTHO05D005177 1.3e-67 260.8 295 59.0
BcaC04g23051 Brassica carinata HOM05D005496 ORTHO05D006677 8.9e-64 248.1 271 58.7
AagrBONN_evm.TU.Sc2ySwM_344.1281 Anthoceros agrestis HOM05D004451 ORTHO05D005177 2.0e-63 246.9 308 51.0
unitig_8.g3679 Utricularia gibba HOM05D004451 ORTHO05D005177 7.6e-63 245.0 322 51.9
SMO118G0560 Selaginella moellendorffii HOM05D004451 ORTHO05D005177 2.0e-55 220.3 181 63.5
CBR_g39267 Chara braunii HOM05D004451 ORTHO05D005177 3.4e-55 219.5 205 60.0
vmacro02006 Vaccinium macrocarpon HOM05D004451 ORTHO05D005177 3.5e-52 209.5 194 64.4
SHI05289 Sapria himalayana HOM05D004451 ORTHO05D005177 4.8e-49 199.1 184 61.4
CDE06G1648 Ceratophyllum demersum HOM05D004451 ORTHO05D005177 6.4e-46 188.7 219 56.6
TAR381G0937 Trochodendron aralioides HOM05D004451 ORTHO05D005177 6.2e-41 172.2 107 86.0
MCO10G127 Micromonas commoda HOM05D004451 ORTHO05D005177 1.9e-34 150.6 187 45.5
CAN.G1231.10 Capsicum annuum HOM05D004451 ORTHO05D005177 1.4e-32 144.4 89 78.7
Zm00001eb234680 Zea mays HOM05D004451 ORTHO05D005177 5.3e-32 142.5 311 38.3
PRCOL_00004645 Prasinoderma coloniale HOM05D004451 ORTHO05D005177 4.2e-29 132.9 203 43.8
SEGI_11302 Sequoiadendron giganteum HOM05D004451 ORTHO05D005177 7.1e-29 132.1 128 58.6
Cre10.g454734 Chlamydomonas reinhardtii HOM05D000133 ORTHO05D005177 4.3e-26 122.9 237 37.1
CAN.G3385.1 Capsicum annuum HOM05D004451 ORTHO05D005177 1.7e-22 110.9 78 78.2
HPP92_008279 Vanilla planifolia HOM05D004451 ORTHO05D005177 9.4e-21 105.1 159 45.9
HanXRQChr01g0018911 Helianthus annuus HOM05D004451 ORTHO05D005177 2.1e-20 104.0 63 82.5
HanXRQChr17g0567381 Helianthus annuus HOM05D004451 ORTHO05D005177 6.1e-20 102.4 63 81.0
CBR_g28861 Chara braunii HOM05D004451 ORTHO05D009492 7.9e-20 102.1 87 60.9
Cre11.g467759 Chlamydomonas reinhardtii HOM05D027551 ORTHO05D005177 3.9e-11 73.2 248 30.2
HanXRQChr05g0151971 Helianthus annuus HOM05D002664 ORTHO05D002974 6.7e-11 72.4 42 83.3


User provided reference genes

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