Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0019666 Camellia sinensis var. sinensis HOM05D003871 ORTHO05D004621 1.0e-213 746.5 383 100.0
CSS0031493 Camellia sinensis var. sinensis HOM05D003871 ORTHO05D004621 3.7e-192 674.9 442 82.4
CSS0038711 Camellia sinensis var. sinensis HOM05D003871 ORTHO05D004621 3.7e-192 674.9 442 82.4
CSS0039371 Camellia sinensis var. sinensis HOM05D003871 ORTHO05D004621 3.9e-173 611.7 440 74.1
Dinv43765 Davidia involucrata HOM05D003871 ORTHO05D004621 3.3e-172 608.6 443 73.6
Dinv16518 Davidia involucrata HOM05D003871 ORTHO05D004621 2.0e-169 599.4 447 71.4
Hma1.2p1_0033F.1_g020520 Hydrangea macrophylla HOM05D003871 ORTHO05D004621 4.9e-168 594.7 446 69.7
GSVIVG01027510001 Vitis vinifera HOM05D003871 ORTHO05D004621 4.9e-168 594.7 440 72.3
Atru.chr5.417 Acer truncatum HOM05D003871 ORTHO05D004621 1.2e-166 590.1 442 71.3
HanXRQChr17g0560011 Helianthus annuus HOM05D003871 ORTHO05D004621 6.0e-166 587.8 447 70.0
Manes.05G039500 Manihot esculenta HOM05D003871 ORTHO05D004621 2.5e-164 582.4 430 71.9
Ciclev10020177m.g Citrus clementina HOM05D003871 ORTHO05D004621 5.8e-161 571.2 442 69.0
TAR374G1595 Trochodendron aralioides HOM05D003871 ORTHO05D004621 2.9e-160 568.9 439 68.3
Glyma.03G016800 Glycine max HOM05D003871 ORTHO05D004621 6.4e-160 567.8 445 68.3
TPR.G17571 Trifolium pratense HOM05D003871 ORTHO05D004621 1.9e-159 566.2 444 67.6
VMungo0331G1218 Vigna mungo HOM05D003871 ORTHO05D004621 1.9e-159 566.2 445 68.3
TWI23G1177 Tripterygium wilfordii HOM05D003871 ORTHO05D004621 2.4e-159 565.8 442 69.0
Hund16957 Selenicereus undatus HOM05D003871 ORTHO05D004621 3.2e-159 565.5 443 68.2
PGSC0003DMG400027768 Solanum tuberosum HOM05D003871 ORTHO05D004621 3.2e-159 565.5 428 69.9
CANSAT56G3752 Cannabis sativa HOM05D003871 ORTHO05D004621 4.2e-159 565.1 446 69.3
Solyc01g091650.3 Solanum lycopersicum HOM05D003871 ORTHO05D004621 4.2e-159 565.1 428 69.6
Rhsim07G0020500 Rhododendron simsii HOM05D003871 ORTHO05D004621 7.1e-159 564.3 505 64.0
CiPaw.02G026000 Carya illinoinensis HOM05D003871 ORTHO05D004621 1.2e-158 563.5 446 68.6
COL.COLO4_12614 Corchorus olitorius HOM05D003871 ORTHO05D004621 2.1e-158 562.8 454 66.7
CiPaw.02G026100 Carya illinoinensis HOM05D003871 ORTHO05D004621 6.0e-158 561.2 448 68.5
Phvul.010G090500 Phaseolus vulgaris HOM05D003871 ORTHO05D004621 6.0e-158 561.2 445 67.4
QL08p050260 Quercus lobata HOM05D003871 ORTHO05D004621 6.0e-158 561.2 460 66.7
Lj3g0009639 Lotus japonicus HOM05D003871 ORTHO05D004621 7.9e-158 560.8 444 67.8
Cc02_g37360 Coffea canephora HOM05D003871 ORTHO05D004621 1.0e-157 560.5 446 67.3
Sopen01g037420 Solanum pennellii HOM05D003871 ORTHO05D004621 1.3e-157 560.1 440 68.2
Duzib133G0086 Durio zibethinus HOM05D003871 ORTHO05D004621 3.0e-157 558.9 454 66.3
Nn1g01381 Nelumbo nucifera HOM05D003871 ORTHO05D004621 3.9e-157 558.5 472 64.2
Glyma.07G077100 Glycine max HOM05D003871 ORTHO05D004621 6.7e-157 557.8 447 67.3
TWI14G1012 Tripterygium wilfordii HOM05D003871 ORTHO05D004621 6.7e-157 557.8 443 68.2
Psat4g151960 Pisum sativum HOM05D003871 ORTHO05D004621 8.7e-157 557.4 444 66.9
Lalb_Chr10g0097451 Lupinus albus HOM05D003871 ORTHO05D004621 1.1e-156 557.0 447 67.8
Duzib138G1891 Durio zibethinus HOM05D003871 ORTHO05D004621 1.9e-156 556.2 454 66.3
Sc23g0003210 Simmondsia chinensis HOM05D003871 ORTHO05D004621 1.9e-156 556.2 453 66.2
HanXRQChr16g0523641 Helianthus annuus HOM05D003871 ORTHO05D004621 4.3e-156 555.1 397 73.6
MD07G1127800 Malus domestica HOM05D003871 ORTHO05D004621 4.3e-156 555.1 444 68.2
Prupe.2G156700 Prunus persica HOM05D003871 ORTHO05D004621 5.6e-156 554.7 444 68.2
Ca_23740_v3 Cicer arietinum L. HOM05D003871 ORTHO05D004621 1.3e-155 553.5 442 67.0
Nitab4.5_0005109g0020 Nicotiana tabacum HOM05D003871 ORTHO05D004621 1.3e-155 553.5 470 64.0
Potri.014G075500 Populus trichocarpa HOM05D003871 ORTHO05D004621 1.6e-155 553.1 435 69.0
CAN.G170.26 Capsicum annuum HOM05D003871 ORTHO05D004621 4.8e-155 551.6 440 66.6
Gohir.A11G085600 Gossypium hirsutum HOM05D003871 ORTHO05D004621 6.2e-155 551.2 454 64.5
PGR042G2189 Punica granatum HOM05D003871 ORTHO05D004621 6.2e-155 551.2 431 68.0
AUR62004300 Chenopodium quinoa HOM05D003871 ORTHO05D004621 8.1e-155 550.8 444 66.9
FvH4_7g13330 Fragaria vesca HOM05D003871 ORTHO05D004621 8.1e-155 550.8 445 67.6
Thecc.01G366900 Theobroma cacao HOM05D003871 ORTHO05D004621 1.1e-154 550.4 454 65.0
Nitab4.5_0004973g0020 Nicotiana tabacum HOM05D003871 ORTHO05D004621 1.8e-154 549.7 436 67.7
vmacro20965 Vaccinium macrocarpon HOM05D003871 ORTHO05D004621 1.8e-154 549.7 484 63.8
Eucgr.E00211 Eucalyptus grandis HOM05D003871 ORTHO05D004621 4.0e-154 548.5 437 68.0
Gohir.D11G089800 Gossypium hirsutum HOM05D003871 ORTHO05D004621 5.3e-154 548.1 454 64.1
FAN10G0206 Fragaria x ananassa HOM05D003871 ORTHO05D004621 2.6e-153 545.8 449 67.0
Lalb_Chr17g0339991 Lupinus albus HOM05D003871 ORTHO05D004621 2.6e-153 545.8 445 67.0
MSTRG.4874 Avicennia marina HOM05D003871 ORTHO05D004621 4.5e-153 545.0 441 66.4
arahy.Tifrunner.gnm1.ann1.AB99XC Arachis hypogaea HOM05D003871 ORTHO05D004621 5.8e-153 544.7 447 66.4
MSTRG.20801 Avicennia marina HOM05D003871 ORTHO05D004621 1.3e-152 543.5 445 66.3
FAN06G3893 Fragaria x ananassa HOM05D003871 ORTHO05D004621 2.2e-152 542.7 457 65.9
Sed0001471 Sechium edule HOM05D003871 ORTHO05D004621 2.2e-152 542.7 448 66.5
FAN01G1876 Fragaria x ananassa HOM05D003871 ORTHO05D004621 2.9e-152 542.3 457 65.9
FAN03G3137 Fragaria x ananassa HOM05D003871 ORTHO05D004621 2.9e-152 542.3 457 65.6
FAN06G4052 Fragaria x ananassa HOM05D003871 ORTHO05D004621 2.9e-152 542.3 457 65.9
Medtr8g432630 Medicago truncatula HOM05D003871 ORTHO05D004621 2.9e-152 542.3 446 65.0
arahy.Tifrunner.gnm1.ann1.6U8ZH2 Arachis hypogaea HOM05D003871 ORTHO05D004621 4.9e-152 541.6 447 66.2
DCAR_016001 Daucus carota HOM05D003871 ORTHO05D004621 6.5e-152 541.2 397 71.0
Potri.002G154500 Populus trichocarpa HOM05D003871 ORTHO05D004621 3.2e-151 538.9 433 66.7
EL10Ac1g00989 Beta vulgaris HOM05D003871 ORTHO05D004621 4.2e-151 538.5 443 66.1
Sabra02G0122500 Salix brachista HOM05D003871 ORTHO05D004621 4.2e-151 538.5 435 66.9
CsaV3_3G009220 Cucumis sativus L. HOM05D003871 ORTHO05D004621 7.1e-151 537.7 451 67.0
Peaxi162Scf00021g00920 Petunia axillaris HOM05D003871 ORTHO05D004621 1.2e-150 537.0 442 66.3
Haze_15212 Corylus avellana HOM05D003871 ORTHO05D004621 2.1e-150 536.2 428 68.0
MELO3C006142.2 Cucumis melo HOM05D003871 ORTHO05D004621 2.1e-150 536.2 451 66.7
Aqoxy7G00418 Aquilegia oxysepala HOM05D003871 ORTHO05D004621 1.3e-149 533.5 441 64.4
AL5G43380 Arabidopsis lyrata HOM05D003871 ORTHO05D004621 1.8e-149 533.1 443 66.1
Migut.B01700 Erythranthe guttata HOM05D003871 ORTHO05D004621 2.3e-149 532.7 445 64.0
Gorai.008G117100 Gossypium raimondii HOM05D003871 ORTHO05D004621 3.9e-149 531.9 395 70.4
FAN10G4186 Fragaria x ananassa HOM05D003871 ORTHO05D004621 5.1e-149 531.6 434 68.0
Rhsim01G0153400 Rhododendron simsii HOM05D003871 ORTHO05D004621 8.7e-149 530.8 543 57.3
vmacro13332 Vaccinium macrocarpon HOM05D003871 ORTHO05D004621 1.1e-148 530.4 463 64.6
Carub.0005s2779 Capsella rubella HOM05D003871 ORTHO05D004621 1.5e-148 530.0 443 65.0
Lsat_1_v5_gn_4_37061 Lactuca sativa HOM05D003871 ORTHO05D004621 1.5e-148 530.0 447 64.7
Sed0018711 Sechium edule HOM05D003871 ORTHO05D004621 1.9e-148 529.6 451 66.1
Gohir.A12G104100 Gossypium hirsutum HOM05D003871 ORTHO05D004621 2.5e-148 529.3 450 63.8
Gohir.D12G107500 Gossypium hirsutum HOM05D003871 ORTHO05D004621 3.3e-148 528.9 395 70.1
Sp5g02240 Schrenkiella parvula HOM05D003871 ORTHO05D004621 4.3e-148 528.5 443 64.6
SGA_v2.0_scaffold153G37076 Striga asiatica HOM05D003871 ORTHO05D004621 5.7e-148 528.1 442 64.3
AT3G61140 Arabidopsis thaliana HOM05D003871 ORTHO05D004621 1.3e-147 526.9 443 65.2
Thhalv10005978m.g Eutrema salsugineum HOM05D003871 ORTHO05D004621 1.3e-147 526.9 443 64.8
CARHR171420 Cardamine hirsuta HOM05D003871 ORTHO05D004621 4.8e-147 525.0 443 64.1
SalBow3G3192 Salvia bowleyana HOM05D003871 ORTHO05D004621 1.8e-146 523.1 452 62.6
THA.LOC104802015 Tarenaya hassleriana HOM05D003871 ORTHO05D004621 2.4e-146 522.7 397 69.0
unitig_22.g5361 Utricularia gibba HOM05D003871 ORTHO05D004621 4.1e-146 521.9 398 69.3
BcaB02g07388 Brassica carinata HOM05D003871 ORTHO05D004621 2.0e-145 519.6 440 63.9
arahy.Tifrunner.gnm1.ann1.I68A9W Arachis hypogaea HOM05D003871 ORTHO05D004621 2.6e-145 519.2 479 61.4
arahy.Tifrunner.gnm1.ann1.WVA4TF Arachis hypogaea HOM05D003871 ORTHO05D004621 5.8e-145 518.1 479 61.2
BcaC07g42655 Brassica carinata HOM05D003871 ORTHO05D004621 5.8e-145 518.1 438 63.5
BcaC08g45104 Brassica carinata HOM05D003871 ORTHO05D004621 5.8e-145 518.1 440 63.2
PSO782G3116 Papaver somniferum HOM05D003871 ORTHO05D004621 1.3e-144 516.9 434 63.6
PSO478G4452 Papaver somniferum HOM05D003871 ORTHO05D004621 3.8e-144 515.4 434 63.1
BcaC07g40617 Brassica carinata HOM05D003871 ORTHO05D004621 3.2e-143 512.3 441 62.6
HPP92_007366 Vanilla planifolia HOM05D003871 ORTHO05D004621 3.2e-143 512.3 395 66.6
Aa31LG10G15210 Aethionema arabicum HOM05D003871 ORTHO05D004621 4.2e-143 511.9 409 67.7
A07p25320 Brassica napus HOM05D003871 ORTHO05D004621 9.3e-143 510.8 450 61.8
ClCG05G001830 Citrullus lanatus HOM05D003871 ORTHO05D004621 9.3e-143 510.8 457 63.9
C06p27130 Brassica napus HOM05D003871 ORTHO05D004621 4.6e-142 508.4 450 61.6
BolC6t37886H Brassica oleracea HOM05D003871 ORTHO05D004621 1.0e-141 507.3 451 61.4
ECA234G1945 Erigeron canadensis HOM05D003871 ORTHO05D005816 1.3e-141 506.9 442 62.4
A09p53200 Brassica napus HOM05D003871 ORTHO05D004621 1.8e-141 506.5 443 61.9
C08p35990 Brassica napus HOM05D003871 ORTHO05D004621 3.0e-141 505.8 442 61.3
BolC8t51181H Brassica oleracea HOM05D003871 ORTHO05D004621 3.0e-141 505.8 442 61.3
CDE11G1114 Ceratophyllum demersum HOM05D003871 ORTHO05D004621 9.7e-140 500.7 395 65.6
Ca_23745_v3 Cicer arietinum L. HOM05D003871 ORTHO05D004621 2.2e-139 499.6 426 64.1
CDE02G2895 Ceratophyllum demersum HOM05D003871 ORTHO05D004621 6.3e-139 498.0 395 65.1
BraA09t40745Z Brassica rapa HOM05D003871 ORTHO05D004621 2.4e-138 496.1 441 61.2
Ca_07858_v3 Cicer arietinum L. HOM05D003871 ORTHO05D004621 3.4e-137 492.3 424 63.2
TPR.G37846 Trifolium pratense HOM05D003871 ORTHO05D004621 6.5e-136 488.0 445 60.4
Os03g0116500 Oryza sativa ssp. japonica HOM05D003871 ORTHO05D004621 2.1e-134 483.0 395 64.1
Psat3g113760 Pisum sativum HOM05D003871 ORTHO05D004621 1.4e-133 480.3 446 59.0
CSS0026628 Camellia sinensis var. sinensis HOM05D003871 ORTHO05D004621 2.3e-133 479.6 374 69.3
SEGI_36445 Sequoiadendron giganteum HOM05D003871 ORTHO05D004621 3.9e-133 478.8 422 62.3
Pp3c11_20980 Physcomitrium patens HOM05D003871 ORTHO05D004621 6.7e-133 478.0 396 62.4
Mapoly0035s0029 Marchantia polymorpha HOM05D003871 ORTHO05D004621 1.1e-132 477.2 391 63.4
SGA_v2.0_scaffold95G28865 Striga asiatica HOM05D003871 ORTHO05D004621 5.7e-132 474.9 470 57.4
Zm00001eb001110 Zea mays HOM05D003871 ORTHO05D004621 7.4e-132 474.6 394 62.9
Lj7C518G12 Lonicera japonica HOM05D003871 ORTHO05D004621 8.2e-131 471.1 428 62.9
MBI12_g36508_MAGBIO Magnolia biondii HOM05D003871 ORTHO05D004621 1.1e-130 470.7 383 65.5
MD01G1050400 Malus domestica HOM05D003871 ORTHO05D004621 5.3e-130 468.4 487 56.9
Medtr7g076160 Medicago truncatula HOM05D003871 ORTHO05D004621 3.4e-129 465.7 399 60.9
Sabra14G0056300 Salix brachista HOM05D003871 ORTHO05D004621 5.9e-129 464.9 493 56.0
SHI13479 Sapria himalayana HOM05D003871 ORTHO05D004621 7.9e-126 454.5 398 60.6
AagrBONN_evm.TU.Sc2ySwM_362.2141 Anthoceros agrestis HOM05D003871 ORTHO05D004621 8.8e-125 451.1 362 64.6
Gorai.007G095800 Gossypium raimondii HOM05D003871 ORTHO05D004621 4.4e-124 448.7 395 60.8
SMO365G0068 Selaginella moellendorffii HOM05D003871 ORTHO05D004621 4.4e-124 448.7 392 58.2
Actinidia38296 Actinidia chinensis HOM05D003871 ORTHO05D004621 7.7e-121 438.0 301 77.1
Actinidia32928 Actinidia chinensis HOM05D003871 ORTHO05D004621 2.9e-120 436.0 373 66.5
Cpa.g.sc18.218 Carica papaya HOM05D003871 ORTHO05D004621 4.4e-116 422.2 306 72.9
ATR0757G035 Amborella trichopoda HOM05D003871 ORTHO05D004621 5.9e-113 411.8 379 59.4
Hund27317 Selenicereus undatus HOM05D003871 ORTHO05D004621 7.7e-113 411.4 385 58.7
PSO782G0235 Papaver somniferum HOM05D003871 ORTHO05D004621 7.2e-103 378.3 390 54.6
TAR375G0585 Trochodendron aralioides HOM05D003871 ORTHO05D004621 4.0e-101 372.5 329 61.1
Cre05.g234300 Chlamydomonas reinhardtii HOM05D003871 ORTHO05D004621 3.7e-91 339.3 389 48.3
PRCOL_00001778 Prasinoderma coloniale HOM05D003871 ORTHO05D004621 2.4e-82 310.1 388 44.8
MCO11G248 Micromonas commoda HOM05D003871 ORTHO05D004621 5.2e-77 292.4 391 41.7
AUR62022749 Chenopodium quinoa HOM05D000087 ORTHO05D004621 6.6e-72 275.4 279 55.9
Pp3c7_5660 Physcomitrium patens HOM05D003871 ORTHO05D004621 2.8e-70 270.0 259 54.1
RcHm_v2.0_Chr1g0352641 Rosa chinensis HOM05D003871 ORTHO05D004621 8.4e-67 258.5 281 55.2
SEGI_15431 Sequoiadendron giganteum HOM05D003871 ORTHO05D004621 1.9e-66 257.3 286 51.7
CARHR257760 Cardamine hirsuta HOM05D003871 ORTHO05D004621 2.1e-65 253.8 216 61.6
Haze_27079 Corylus avellana HOM05D003871 ORTHO05D004621 1.5e-63 247.7 402 39.8
Peaxi162Scf00233g00516 Petunia axillaris HOM05D003871 ORTHO05D004621 1.5e-60 237.7 229 56.3
RcHm_v2.0_Chr1g0352651 Rosa chinensis HOM05D003871 ORTHO05D004621 2.6e-60 236.9 134 86.6
Carub.0003s3282 Capsella rubella HOM05D003871 ORTHO05D004621 3.4e-60 236.5 237 56.1
AL8G39820 Arabidopsis lyrata HOM05D003871 ORTHO05D004621 2.2e-43 180.6 351 33.9
CBR_g34614 Chara braunii HOM05D000019 ORTHO05D000002 2.7e-41 173.7 123 70.7
BcaC01g03725 Brassica carinata HOM05D003871 ORTHO05D004621 1.0e-35 155.2 344 34.6
TAR375G0392 Trochodendron aralioides HOM05D003871 ORTHO05D004621 3.8e-35 153.3 86 89.5
Cfa025745 Carpinus fangiana HOM05D003871 ORTHO05D004621 7.1e-34 149.1 439 28.2
C03p49270 Brassica napus HOM05D003871 ORTHO05D004621 2.3e-32 144.1 356 31.7
Zm00001eb403970 Zea mays HOM05D003871 ORTHO05D004621 3.0e-32 143.7 104 64.4
BraA07t30175Z Brassica rapa HOM05D003871 ORTHO05D004621 8.7e-32 142.1 82 84.1
Gohir.A06G193200 Gossypium hirsutum HOM05D003871 ORTHO05D004621 2.1e-30 137.5 149 51.0
arahy.Tifrunner.gnm1.ann1.GU6ASX Arachis hypogaea HOM05D003871 ORTHO05D004621 2.8e-30 137.1 188 44.7
BolC3t17208H Brassica oleracea HOM05D003843 ORTHO05D004621 2.8e-30 137.1 174 41.4
Gohir.A05G281600 Gossypium hirsutum HOM05D003871 ORTHO05D004621 4.1e-29 133.3 149 49.0
HPP92_007379 Vanilla planifolia HOM05D003871 ORTHO05D004621 4.1e-29 133.3 81 80.2
Medtr6g025300 Medicago truncatula HOM05D003871 ORTHO05D004621 4.5e-28 129.8 360 29.2
Lsat_1_v5_gn_8_32720 Lactuca sativa HOM05D003110 ORTHO05D003585 4.3e-23 113.2 114 56.1
Lsat_1_v5_gn_9_24280 Lactuca sativa HOM05D003871 ORTHO05D004621 1.3e-22 111.7 135 50.4
EL10Ac1g00724 Beta vulgaris HOM05D003871 ORTHO05D004621 1.2e-20 105.1 157 42.0
Actinidia38295 Actinidia chinensis HOM05D003871 ORTHO05D004621 2.2e-19 100.9 92 58.7
ClCG06G000070 Citrullus lanatus HOM05D002904 ORTHO05D003206 3.3e-15 87.0 278 29.9
BcaC01g03724 Brassica carinata HOM05D003871 ORTHO05D039068 7.4e-15 85.9 97 45.4
arahy.Tifrunner.gnm1.ann1.F39Z70 Arachis hypogaea HOM05D008215 ORTHO05D004366 4.8e-14 83.2 56 71.4
C03p23120 Brassica napus HOM05D003871 ORTHO05D032550 1.3e-11 75.1 72 52.8
Oeu038681.1 Olea europaea HOM05D003871 ORTHO05D004621 1.3e-11 75.1 91 46.2
Hma1.2p1_0775F.1_g216560 Hydrangea macrophylla HOM05D003871 ORTHO05D004621 2.9e-11 73.9 91 44.0
Haze_26412 Corylus avellana HOM05D003221 ORTHO05D004432 5.0e-11 73.2 187 26.7
Cre13.g581450 Chlamydomonas reinhardtii HOM05D003221 ORTHO05D004432 1.4e-10 71.6 179 27.4
PRCOL_00002590 Prasinoderma coloniale HOM05D003221 ORTHO05D004432 1.9e-10 71.2 197 25.9
MCO04G155 Micromonas commoda HOM05D003221 ORTHO05D004432 5.5e-10 69.7 165 26.7
BcaB02g11168 Brassica carinata HOM05D003871 ORTHO05D004621 6.1e-09 66.2 105 39.0
BcaB04g17067 Brassica carinata HOM05D003871 ORTHO05D004621 1.4e-08 65.1 105 38.1
BcaB08g34774 Brassica carinata HOM05D000054 ORTHO05D000286 2.3e-08 64.3 56 58.9
CBR_g40800 Chara braunii HOM05D003221 ORTHO05D004432 2.0e-07 61.2 192 25.0


User provided reference genes

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