Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0019642 Camellia sinensis var. sinensis HOM05D004710 ORTHO05D005445 4.9e-258 894.0 480 100.0
GSVIVG01020835001 Vitis vinifera HOM05D004710 ORTHO05D005445 7.7e-219 763.8 501 83.8
Rhsim12G0010700 Rhododendron simsii HOM05D004710 ORTHO05D005445 6.7e-215 750.7 502 81.5
vmacro08738 Vaccinium macrocarpon HOM05D004710 ORTHO05D005445 2.9e-210 735.3 502 80.3
Cc05_g01390 Coffea canephora HOM05D004710 ORTHO05D005445 4.2e-209 731.5 501 79.4
QL93p2016_0028 Quercus lobata HOM05D004710 ORTHO05D005445 7.2e-209 730.7 506 79.2
QL08p045042 Quercus lobata HOM05D004710 ORTHO05D005445 2.1e-208 729.2 492 80.5
Ciclev10031314m.g Citrus clementina HOM05D004710 ORTHO05D005445 8.8e-207 723.8 499 79.6
Cfa023545 Carpinus fangiana HOM05D004710 ORTHO05D005445 7.4e-206 720.7 501 77.6
Prupe.3G177900 Prunus persica HOM05D004710 ORTHO05D005445 1.3e-205 719.9 499 79.2
CANSAT64G1857 Cannabis sativa HOM05D004710 ORTHO05D005445 6.3e-205 717.6 501 78.4
CiPaw.04G137800 Carya illinoinensis HOM05D004710 ORTHO05D005445 1.8e-204 716.1 500 78.8
Atru.chr6.2043 Acer truncatum HOM05D004710 ORTHO05D005445 5.9e-203 711.1 499 78.8
Potri.002G057300 Populus trichocarpa HOM05D004710 ORTHO05D005445 2.2e-202 709.1 503 77.5
COL.COLO4_38396 Corchorus olitorius HOM05D004710 ORTHO05D005445 5.0e-202 708.0 501 77.8
TWI59G0681 Tripterygium wilfordii HOM05D004710 ORTHO05D005445 5.0e-202 708.0 500 78.2
Thecc.01G168300 Theobroma cacao HOM05D004710 ORTHO05D005445 1.1e-201 706.8 504 78.2
MSTRG.14902 Avicennia marina HOM05D004710 ORTHO05D005445 4.2e-201 704.9 501 76.6
FvH4_6g38730 Fragaria vesca HOM05D004710 ORTHO05D005445 5.5e-201 704.5 501 76.6
Potri.005G205300 Populus trichocarpa HOM05D004710 ORTHO05D005445 1.2e-200 703.4 502 76.7
Hma1.2p1_0073F.1_g038510 Hydrangea macrophylla HOM05D004710 ORTHO05D005445 2.7e-200 702.2 510 79.0
Gohir.A08G051500 Gossypium hirsutum HOM05D004710 ORTHO05D005445 1.0e-199 700.3 503 77.7
Duzib211G0680 Durio zibethinus HOM05D004710 ORTHO05D005445 4.0e-199 698.4 493 78.5
Gohir.D08G061300 Gossypium hirsutum HOM05D004710 ORTHO05D005445 2.0e-198 696.0 503 77.3
Actinidia11220 Actinidia chinensis HOM05D004710 ORTHO05D005445 4.4e-198 694.9 501 76.8
FAN05G2509 Fragaria x ananassa HOM05D004710 ORTHO05D005445 5.7e-198 694.5 521 74.3
Glyma.02G284400 Glycine max HOM05D004710 ORTHO05D005445 1.3e-197 693.3 496 77.2
Duzib133G0803 Durio zibethinus HOM05D004710 ORTHO05D005445 2.2e-197 692.6 493 78.7
TAR624G0695 Trochodendron aralioides HOM05D004710 ORTHO05D005445 4.8e-197 691.4 499 76.8
Glyma.14G030600 Glycine max HOM05D004710 ORTHO05D005445 6.3e-197 691.0 496 77.0
Gorai.004G063400 Gossypium raimondii HOM05D004710 ORTHO05D005445 1.1e-196 690.3 503 76.9
arahy.Tifrunner.gnm1.ann1.3YJ1U6 Arachis hypogaea HOM05D004710 ORTHO05D005445 1.4e-196 689.9 499 76.4
Nn7g38035 Nelumbo nucifera HOM05D004710 ORTHO05D005445 1.4e-196 689.9 494 77.1
MD17G1134500 Malus domestica HOM05D004710 ORTHO05D005445 1.8e-196 689.5 496 76.4
FAN02G0505 Fragaria x ananassa HOM05D004710 ORTHO05D005445 2.4e-196 689.1 531 72.7
arahy.Tifrunner.gnm1.ann1.BVM079 Arachis hypogaea HOM05D004710 ORTHO05D005445 4.1e-196 688.3 499 76.2
Eucgr.A02027 Eucalyptus grandis HOM05D004710 ORTHO05D005445 4.1e-196 688.3 500 75.4
SGA_v2.0_scaffold73G24477 Striga asiatica HOM05D004710 ORTHO05D005445 2.0e-195 686.0 496 75.2
Actinidia06121 Actinidia chinensis HOM05D004710 ORTHO05D005445 1.0e-194 683.7 420 88.3
PGR042G2540 Punica granatum HOM05D004710 ORTHO05D005445 1.0e-194 683.7 497 76.5
TPR.G10151 Trifolium pratense HOM05D004710 ORTHO05D005445 1.0e-194 683.7 498 76.7
Gorai.001G211100 Gossypium raimondii HOM05D004710 ORTHO05D005445 1.7e-194 682.9 503 75.3
ClCG07G010740 Citrullus lanatus HOM05D004710 ORTHO05D005445 3.8e-194 681.8 492 76.4
CsaV3_4G007580 Cucumis sativus L. HOM05D004710 ORTHO05D005445 5.0e-194 681.4 491 76.6
Gohir.A07G182700 Gossypium hirsutum HOM05D004710 ORTHO05D005445 1.5e-193 679.9 503 75.1
Medtr5g091000 Medicago truncatula HOM05D004710 ORTHO05D005445 1.9e-193 679.5 498 75.9
MD09G1148200 Malus domestica HOM05D004710 ORTHO05D005445 2.5e-193 679.1 472 79.2
Phvul.008G194500 Phaseolus vulgaris HOM05D004710 ORTHO05D005445 2.5e-193 679.1 496 75.8
Psat2g017280 Pisum sativum HOM05D004710 ORTHO05D005445 3.2e-193 678.7 492 76.6
Sopen05g017300 Solanum pennellii HOM05D004710 ORTHO05D005445 5.5e-193 677.9 501 75.6
MELO3C016183.2 Cucumis melo HOM05D004710 ORTHO05D005445 7.2e-193 677.6 487 76.4
FAN14G4495 Fragaria x ananassa HOM05D004710 ORTHO05D005445 1.2e-192 676.8 510 73.9
Cpa.g.sc50.115 Carica papaya HOM05D004710 ORTHO05D005445 2.1e-192 676.0 503 75.1
Aqoxy4G00042 Aquilegia oxysepala HOM05D004710 ORTHO05D005445 4.7e-192 674.9 502 74.9
TAR625G1186 Trochodendron aralioides HOM05D004710 ORTHO05D005445 4.7e-192 674.9 499 74.9
VMungo0647G1334 Vigna mungo HOM05D004710 ORTHO05D005445 2.3e-191 672.5 482 76.8
Sc15g0002190 Simmondsia chinensis HOM05D004710 ORTHO05D005445 8.8e-191 670.6 493 75.3
Migut.M00073 Erythranthe guttata HOM05D004710 ORTHO05D005445 1.2e-190 670.2 501 74.1
Lalb_Chr10g0106551 Lupinus albus HOM05D004710 ORTHO05D005445 5.7e-190 667.9 499 74.5
RcHm_v2.0_Chr2g0152261 Rosa chinensis HOM05D004710 ORTHO05D005445 5.7e-190 667.9 501 73.7
Ca_06262_v3 Cicer arietinum L. HOM05D004710 ORTHO05D005445 2.8e-189 665.6 497 75.5
Sabra05G0156000 Salix brachista HOM05D004710 ORTHO05D005445 7.7e-187 657.5 524 71.8
Sed0010176 Sechium edule HOM05D004710 ORTHO05D005445 7.7e-187 657.5 492 74.8
Sabra02G0046700 Salix brachista HOM05D004710 ORTHO05D005445 2.5e-185 652.5 491 74.9
THA.LOC104800818 Tarenaya hassleriana HOM05D004710 ORTHO05D005445 5.5e-185 651.4 507 71.8
Lalb_Chr04g0248931 Lupinus albus HOM05D004710 ORTHO05D005445 9.5e-185 650.6 493 74.2
EL10Ac9g22830 Beta vulgaris HOM05D004710 ORTHO05D005445 6.1e-184 647.9 512 70.5
DCAR_013324 Daucus carota HOM05D004710 ORTHO05D005445 1.0e-183 647.1 501 72.9
Sed0002024 Sechium edule HOM05D004710 ORTHO05D005445 1.8e-183 646.4 486 74.1
HanXRQChr17g0541191 Helianthus annuus HOM05D004710 ORTHO05D005445 1.2e-182 643.7 508 71.5
ECA246G2799 Erigeron canadensis HOM05D004710 ORTHO05D005445 1.5e-182 643.3 496 72.2
LjContig00049g0017244 Lotus japonicus HOM05D004710 ORTHO05D005445 2.0e-182 642.9 496 72.8
PSO675G4395 Papaver somniferum HOM05D004710 ORTHO05D005445 2.0e-182 642.9 500 73.8
Gohir.D07G189500 Gossypium hirsutum HOM05D004710 ORTHO05D005445 2.2e-181 639.4 470 76.2
HanXRQChr06g0171641 Helianthus annuus HOM05D004710 ORTHO05D005445 2.8e-181 639.0 497 71.4
PSO675G5558 Papaver somniferum HOM05D004710 ORTHO05D005445 1.1e-180 637.1 501 73.1
Eucgr.K01227 Eucalyptus grandis HOM05D004710 ORTHO05D005445 5.4e-180 634.8 495 72.3
Thhalv10016548m.g Eutrema salsugineum HOM05D004710 ORTHO05D005445 5.4e-180 634.8 491 71.5
Aa31LG5G6040 Aethionema arabicum HOM05D004710 ORTHO05D005445 7.0e-180 634.4 513 70.4
Peaxi162Scf00416g00116 Petunia axillaris HOM05D004710 ORTHO05D005445 7.0e-180 634.4 502 73.3
Carub.0004s1208 Capsella rubella HOM05D004710 ORTHO05D005445 5.9e-179 631.3 492 71.3
CARHR124360 Cardamine hirsuta HOM05D004710 ORTHO05D005445 1.0e-178 630.6 508 69.7
AT2G30880 Arabidopsis thaliana HOM05D004710 ORTHO05D005445 2.9e-178 629.0 508 70.5
Hund08425 Selenicereus undatus HOM05D004710 ORTHO05D005445 5.0e-178 628.2 493 71.0
AL4G25830 Arabidopsis lyrata HOM05D004710 ORTHO05D005445 8.6e-178 627.5 508 69.7
Sp4g13350 Schrenkiella parvula HOM05D004710 ORTHO05D005445 8.6e-178 627.5 492 71.5
Manes.01G130800 Manihot esculenta HOM05D004710 ORTHO05D005445 1.1e-177 627.1 440 78.0
A04p23580 Brassica napus HOM05D004710 ORTHO05D005445 3.3e-177 625.5 487 71.3
Lj6g0000252 Lotus japonicus HOM05D004710 ORTHO05D005445 5.6e-177 624.8 486 72.0
Lj6g0021308 Lotus japonicus HOM05D004710 ORTHO05D005445 1.2e-176 623.6 479 72.2
BcaB06g28390 Brassica carinata HOM05D004710 ORTHO05D005445 2.3e-175 619.4 491 70.7
Lsat_1_v5_gn_3_35160 Lactuca sativa HOM05D004710 ORTHO05D005445 2.2e-173 612.8 498 70.3
Os03g0666200 Oryza sativa ssp. japonica HOM05D004710 ORTHO05D005445 4.9e-173 611.7 494 68.2
ATR0763G198 Amborella trichopoda HOM05D004710 ORTHO05D005445 1.4e-172 610.1 503 68.0
BolC4t27504H Brassica oleracea HOM05D004710 ORTHO05D005445 1.0e-170 604.0 485 69.7
FAN09G1050 Fragaria x ananassa HOM05D004710 ORTHO05D005445 3.0e-170 602.4 523 67.7
BraA04t17884Z Brassica rapa HOM05D004710 ORTHO05D005445 3.9e-170 602.1 487 69.6
BcaB06g28457 Brassica carinata HOM05D004710 ORTHO05D005445 5.0e-170 601.7 485 69.5
HPP92_018652 Vanilla planifolia HOM05D004710 ORTHO05D005445 6.6e-170 601.3 500 66.2
Zm00001eb065510 Zea mays HOM05D004710 ORTHO05D005445 1.5e-169 600.1 503 66.0
C04p60020 Brassica napus HOM05D004710 ORTHO05D005445 1.6e-168 596.7 472 69.9
Nitab4.5_0003177g0030 Nicotiana tabacum HOM05D004710 ORTHO05D005445 1.4e-167 593.6 380 83.9
Lj1C589T0 Lonicera japonica HOM05D004710 ORTHO05D005445 2.9e-165 585.9 531 66.9
Solyc05g021100.2 Solanum lycopersicum HOM05D004710 ORTHO05D005445 1.3e-162 577.0 441 73.9
AUR62015127 Chenopodium quinoa HOM05D004710 ORTHO05D005445 2.0e-158 563.1 491 66.2
Gohir.1Z049561 Gossypium hirsutum HOM05D004710 ORTHO05D005445 6.0e-155 551.6 356 82.6
SGA_v2.0_scaffold181G39713 Striga asiatica HOM05D004710 ORTHO05D005445 1.4e-151 540.4 468 67.5
Ah.01g013580 Amaranthus hybridus HOM05D004710 ORTHO05D005445 4.0e-151 538.9 479 65.1
Zm00001eb117740 Zea mays HOM05D004710 ORTHO05D005445 1.3e-144 517.3 481 60.9
MBI18_g07571_MAGBIO Magnolia biondii HOM05D004710 ORTHO05D005445 2.5e-137 493.0 446 65.0
Nitab4.5_0000019g0200 Nicotiana tabacum HOM05D004710 ORTHO05D005445 1.1e-135 487.6 393 72.5
PGR142G3117 Punica granatum HOM05D004710 ORTHO05D005445 1.2e-134 484.2 492 58.5
BcaB01g04076 Brassica carinata HOM05D004710 ORTHO05D005445 6.7e-130 468.4 490 59.4
SEGI_28206 Sequoiadendron giganteum HOM05D004710 ORTHO05D005445 1.1e-127 461.1 386 64.0
Zm00001eb217790 Zea mays HOM05D004710 ORTHO05D005445 7.6e-126 454.9 401 64.1
CAN.G237.1 Capsicum annuum HOM05D004710 ORTHO05D005445 2.3e-122 443.4 374 69.8
BcaC01g06018 Brassica carinata HOM05D004710 ORTHO05D005445 5.0e-117 425.6 484 57.0
C03p20350 Brassica napus HOM05D004710 ORTHO05D005445 1.6e-107 394.0 376 63.3
BolC3t14413H Brassica oleracea HOM05D004710 ORTHO05D005445 1.6e-107 394.0 376 63.3
Oeu040170.3 Olea europaea HOM05D004710 ORTHO05D005445 2.8e-104 383.3 407 57.2
Dinv09874 Davidia involucrata HOM05D004710 ORTHO05D005445 1.4e-103 380.9 205 93.7
Mapoly0039s0099 Marchantia polymorpha HOM05D004710 ORTHO05D005445 3.5e-94 349.7 377 53.8
Haze_13560 Corylus avellana HOM05D004710 ORTHO05D005445 1.0e-90 338.2 253 76.3
SMO169G0289 Selaginella moellendorffii HOM05D004710 ORTHO05D005445 4.4e-89 332.8 324 55.6
Pp3c23_16670 Physcomitrium patens HOM05D004710 ORTHO05D005445 3.7e-88 329.7 388 52.1
FAN06G4649 Fragaria x ananassa HOM05D004710 ORTHO05D005445 2.3e-82 310.5 219 75.8
Aa31LG1G7230 Aethionema arabicum HOM05D004710 ORTHO05D005445 6.3e-80 302.4 221 74.2
AagrBONN_evm.TU.Sc2ySwM_228.2862 Anthoceros agrestis HOM05D004710 ORTHO05D005445 6.3e-80 302.4 375 47.2
AUR62017588 Chenopodium quinoa HOM05D004710 ORTHO05D005445 1.2e-65 255.0 202 71.8
Pp3c13_22640 Physcomitrium patens HOM05D004710 ORTHO05D005445 1.1e-60 238.4 406 41.1
MBI18_g48251_MAGBIO Magnolia biondii HOM05D004710 ORTHO05D005445 2.5e-60 237.3 276 53.3
CBR_g48423 Chara braunii HOM05D004710 ORTHO05D005445 1.0e-58 231.9 399 39.8
Pp3c26_520 Physcomitrium patens HOM05D004710 ORTHO05D005445 3.6e-51 206.8 427 36.3
FAN18G0865 Fragaria x ananassa HOM05D004710 ORTHO05D005445 2.9e-48 197.2 164 66.5
A03p17240 Brassica napus HOM05D004710 ORTHO05D005445 3.2e-39 167.2 289 43.6
Dinv09873 Davidia involucrata HOM05D004710 ORTHO05D005445 3.2e-39 167.2 132 72.0
FAN08G2380 Fragaria x ananassa HOM05D004710 ORTHO05D005445 9.2e-39 165.6 96 84.4
Haze_13559 Corylus avellana HOM05D004710 ORTHO05D005445 2.3e-37 161.0 91 86.8
Os07g0138100 Oryza sativa ssp. japonica HOM05D004710 ORTHO05D005445 3.9e-37 160.2 106 68.9
HPP92_018658 Vanilla planifolia HOM05D004710 ORTHO05D005445 6.4e-32 142.9 87 80.5
SHI10530 Sapria himalayana HOM05D000906 ORTHO05D000713 3.5e-22 110.5 184 41.3
Aa31LG1G7240 Aethionema arabicum HOM05D004710 ORTHO05D005445 1.7e-21 108.2 144 50.0
BraA03t10998Z Brassica rapa HOM05D004710 ORTHO05D005445 1.7e-21 108.2 122 52.5
AUR62017587 Chenopodium quinoa HOM05D004710 ORTHO05D005445 2.0e-17 94.7 93 53.8
BraA03t10997Z Brassica rapa HOM05D004710 ORTHO05D005445 3.2e-15 87.4 71 69.0
Os05g0128700 Oryza sativa ssp. japonica HOM05D004710 ORTHO05D005445 1.9e-12 78.2 62 64.5
Os12g0505950 Oryza sativa ssp. japonica HOM05D004710 ORTHO05D005445 1.9e-12 78.2 62 64.5
Os05g0153901 Oryza sativa ssp. japonica HOM05D004710 ORTHO05D005445 1.8e-10 71.6 62 59.7
Zm00001eb299690 Zea mays HOM05D004710 ORTHO05D005445 1.2e-09 68.9 59 67.8
Lj1A589T9 Lonicera japonica HOM05D004710 ORTHO05D005445 2.9e-08 64.3 50 74.0
Lj6g0000199 Lotus japonicus HOM05D004710 ORTHO05D005445 9.3e-07 59.3 38 71.1
MBI18_g29058_MAGBIO Magnolia biondii HOM05D004710 ORTHO05D005445 1.2e-06 58.9 190 31.6
Solyc05g150127.1 Solanum lycopersicum HOM05D004710 ORTHO05D005445 6.0e-06 56.6 38 81.6


User provided reference genes

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