Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0019641 Camellia sinensis var. sinensis HOM05D001742 ORTHO05D001689 5.8e-29 130.2 65 100.0
MSTRG.17938 Avicennia marina HOM05D001742 ORTHO05D001689 6.9e-14 80.1 46 76.1
Ca_15094_v3 Cicer arietinum L. HOM05D001742 ORTHO05D001689 6.9e-14 80.1 45 77.8
TPR.G37344 Trifolium pratense HOM05D001742 ORTHO05D001689 6.9e-14 80.1 45 80.0
Medtr3g063070 Medicago truncatula HOM05D001742 ORTHO05D001689 9.0e-14 79.7 45 77.8
PSO339G1742 Papaver somniferum HOM05D001742 ORTHO05D001689 9.0e-14 79.7 47 74.5
PSO384G5028 Papaver somniferum HOM05D001742 ORTHO05D001689 9.0e-14 79.7 47 74.5
Psat5g146160 Pisum sativum HOM05D001742 ORTHO05D001689 2.0e-13 78.6 45 75.6
Glyma.18G048700 Glycine max HOM05D001742 ORTHO05D001689 2.6e-13 78.2 45 75.6
Lalb_Chr20g0117231 Lupinus albus HOM05D001742 ORTHO05D001689 2.6e-13 78.2 45 73.3
GSVIVG01024517001 Vitis vinifera HOM05D001742 ORTHO05D001689 2.6e-13 78.2 45 80.0
Actinidia34516 Actinidia chinensis HOM05D001742 ORTHO05D001689 3.4e-13 77.8 44 79.5
FvH4_3g41280 Fragaria vesca HOM05D001742 ORTHO05D001689 4.5e-13 77.4 48 68.8
FAN11G3117 Fragaria x ananassa HOM05D001742 ORTHO05D001689 4.5e-13 77.4 48 68.8
Glyma.11G202100 Glycine max HOM05D001742 ORTHO05D001689 4.5e-13 77.4 45 73.3
FAN21G0507 Fragaria x ananassa HOM05D001742 ORTHO05D001689 5.9e-13 77.0 47 70.2
CiPaw.13G059100 Carya illinoinensis HOM05D001742 ORTHO05D001689 1.0e-12 76.3 45 73.3
CsaV3_6G013280 Cucumis sativus L. HOM05D001742 ORTHO05D001689 1.3e-12 75.9 45 75.6
Lj1C108G12 Lonicera japonica HOM05D001742 ORTHO05D001689 1.3e-12 75.9 45 73.3
Migut.D00787 Erythranthe guttata HOM05D001742 ORTHO05D001689 1.7e-12 75.5 45 73.3
ClCG02G018910 Citrullus lanatus HOM05D001742 ORTHO05D001689 2.2e-12 75.1 45 73.3
Ciclev10002171m.g Citrus clementina HOM05D001742 ORTHO05D001689 2.9e-12 74.7 45 71.1
Phvul.006G082800 Phaseolus vulgaris HOM05D001742 ORTHO05D001689 2.9e-12 74.7 45 71.1
MSTRG.12724 Avicennia marina HOM05D001742 ORTHO05D001689 3.8e-12 74.3 45 73.3
FAN16G1983 Fragaria x ananassa HOM05D001742 ORTHO05D001689 3.8e-12 74.3 47 68.1
DCAR_012717 Daucus carota HOM05D001742 ORTHO05D001689 5.0e-12 73.9 45 68.9
Rhsim01G0245700 Rhododendron simsii HOM05D001742 ORTHO05D001689 5.0e-12 73.9 44 70.5
Sed0014308 Sechium edule HOM05D001742 ORTHO05D001689 5.0e-12 73.9 45 75.6
Atru.chr10.2374 Acer truncatum HOM05D001742 ORTHO05D001689 6.5e-12 73.6 45 75.6
Migut.N00701 Erythranthe guttata HOM05D001742 ORTHO05D001689 6.5e-12 73.6 45 64.4
Lj6g0009069 Lotus japonicus HOM05D001742 ORTHO05D001689 8.4e-12 73.2 45 71.1
Lalb_Chr18g0053991 Lupinus albus HOM05D001742 ORTHO05D001689 8.4e-12 73.2 45 71.1
Nitab4.5_0002399g0010 Nicotiana tabacum HOM05D001742 ORTHO05D001689 8.4e-12 73.2 45 71.1
vmacro14662 Vaccinium macrocarpon HOM05D001742 ORTHO05D001689 8.4e-12 73.2 44 72.7
CiPaw.14G047300 Carya illinoinensis HOM05D001742 ORTHO05D001689 1.1e-11 72.8 44 70.5
Peaxi162Scf00293g00511 Petunia axillaris HOM05D001742 ORTHO05D001689 1.1e-11 72.8 45 71.1
SGA_v2.0_scaffold120G33011 Striga asiatica HOM05D001742 ORTHO05D001689 1.1e-11 72.8 44 70.5
Lalb_Chr17g0345741 Lupinus albus HOM05D001742 ORTHO05D001689 1.9e-11 72.0 43 72.1
Nitab4.5_0000539g0070 Nicotiana tabacum HOM05D001742 ORTHO05D001689 1.9e-11 72.0 44 72.7
Carub.0006s2896 Capsella rubella HOM05D001742 ORTHO05D001689 2.5e-11 71.6 45 71.1
Aqoxy2G00630 Aquilegia oxysepala HOM05D001742 ORTHO05D001689 3.2e-11 71.2 46 63.0
Cpa.g.sc2.246 Carica papaya HOM05D001742 ORTHO05D001689 3.2e-11 71.2 45 66.7
THA.LOC104806476 Tarenaya hassleriana HOM05D001742 ORTHO05D001689 3.2e-11 71.2 44 68.2
Gorai.004G000700 Gossypium raimondii HOM05D001742 ORTHO05D001689 4.2e-11 70.9 44 70.5
Hma1.2p1_0161F.1_g071940 Hydrangea macrophylla HOM05D001742 ORTHO05D001689 4.2e-11 70.9 45 73.3
Prupe.6G037300 Prunus persica HOM05D001742 ORTHO05D001689 4.2e-11 70.9 45 71.1
PGR083G0948 Punica granatum HOM05D001742 ORTHO05D001689 4.2e-11 70.9 45 68.9
PGSC0003DMG400025401 Solanum tuberosum HOM05D001742 ORTHO05D001689 4.2e-11 70.9 44 70.5
AT4G10360 Arabidopsis thaliana HOM05D001742 ORTHO05D001689 5.5e-11 70.5 45 68.9
RcHm_v2.0_Chr5g0074081 Rosa chinensis HOM05D001742 ORTHO05D001689 7.2e-11 70.1 48 64.6
Sp6g07060 Schrenkiella parvula HOM05D001742 ORTHO05D001689 7.2e-11 70.1 44 70.5
Aa31LG6G7810 Aethionema arabicum HOM05D001742 ORTHO05D001689 9.3e-11 69.7 44 68.2
AL6G44260 Arabidopsis lyrata HOM05D001742 ORTHO05D001689 9.3e-11 69.7 45 68.9
CANSAT54G2143 Cannabis sativa HOM05D001742 ORTHO05D001689 9.3e-11 69.7 44 68.2
CARHR256280 Cardamine hirsuta HOM05D001742 ORTHO05D001689 9.3e-11 69.7 44 70.5
Thhalv10028888m.g Eutrema salsugineum HOM05D001742 ORTHO05D001689 9.3e-11 69.7 44 68.2
Glyma.02G238600 Glycine max HOM05D001742 ORTHO05D001689 9.3e-11 69.7 45 66.7
MD11G1048300 Malus domestica HOM05D001742 ORTHO05D001689 9.3e-11 69.7 45 66.7
Solyc09g018670.3 Solanum lycopersicum HOM05D001742 ORTHO05D001689 9.3e-11 69.7 45 64.4
Sopen09g012200 Solanum pennellii HOM05D001742 ORTHO05D001689 9.3e-11 69.7 45 64.4
BcaC04g21032 Brassica carinata HOM05D001742 ORTHO05D001689 1.2e-10 69.3 43 72.1
BolC9t56481H Brassica oleracea HOM05D001742 ORTHO05D001689 1.2e-10 69.3 43 72.1
BraA09t38432Z Brassica rapa HOM05D001742 ORTHO05D001689 1.2e-10 69.3 43 72.1
Eucgr.I02807 Eucalyptus grandis HOM05D001742 ORTHO05D001689 1.2e-10 69.3 52 63.5
Oeu023906.1 Olea europaea HOM05D001742 ORTHO05D001689 1.2e-10 69.3 45 64.4
CSS0020587 Camellia sinensis var. sinensis HOM05D001742 ORTHO05D001689 1.6e-10 68.9 43 79.1
THA.LOC104810273 Tarenaya hassleriana HOM05D001742 ORTHO05D001689 1.6e-10 68.9 43 69.8
THA.LOC104825096 Tarenaya hassleriana HOM05D001742 ORTHO05D001689 1.6e-10 68.9 43 69.8
Os01g0817100 Oryza sativa ssp. japonica HOM05D001742 ORTHO05D001689 2.7e-10 68.2 43 69.8
Aa31LG9G11650 Aethionema arabicum HOM05D001742 ORTHO05D001689 3.5e-10 67.8 43 67.4
CSS0039732 Camellia sinensis var. sinensis HOM05D001742 ORTHO05D001689 3.5e-10 67.8 42 73.8
Carub.0240s0001 Capsella rubella HOM05D001742 ORTHO05D001689 3.5e-10 67.8 43 69.8
Glyma.14G207500 Glycine max HOM05D001742 ORTHO05D001689 3.5e-10 67.8 45 64.4
Phvul.008G243400 Phaseolus vulgaris HOM05D001742 ORTHO05D001689 3.5e-10 67.8 44 65.9
Thecc.09G366800 Theobroma cacao HOM05D001742 ORTHO05D001689 3.5e-10 67.8 45 66.7
Manes.18G122000 Manihot esculenta HOM05D001742 ORTHO05D001689 4.6e-10 67.4 42 69.0
Potri.019G133500 Populus trichocarpa HOM05D001742 ORTHO05D001689 6.1e-10 67.0 44 63.6
BcaC03g16400 Brassica carinata HOM05D001742 ORTHO05D001689 7.9e-10 66.6 42 71.4
A02p26650 Brassica napus HOM05D001742 ORTHO05D001689 7.9e-10 66.6 42 71.4
C02p42320 Brassica napus HOM05D001742 ORTHO05D001689 7.9e-10 66.6 42 71.4
BolC2t10273H Brassica oleracea HOM05D001742 ORTHO05D001689 7.9e-10 66.6 42 71.4
BraA02t07669Z Brassica rapa HOM05D001742 ORTHO05D001689 7.9e-10 66.6 42 71.4
MD03G1046000 Malus domestica HOM05D001742 ORTHO05D001689 7.9e-10 66.6 45 64.4
HPP92_019765 Vanilla planifolia HOM05D001742 ORTHO05D001689 7.9e-10 66.6 45 60.0
VMungo0647G1587 Vigna mungo HOM05D001742 ORTHO05D001689 7.9e-10 66.6 45 62.2
ATR1127G047 Amborella trichopoda HOM05D001742 ORTHO05D001689 1.3e-09 65.9 44 63.6
CDE07G1577 Ceratophyllum demersum HOM05D001742 ORTHO05D001689 1.3e-09 65.9 43 65.1
HanXRQChr01g0013441 Helianthus annuus HOM05D001742 ORTHO05D001689 1.3e-09 65.9 37 78.4
SalBow2G2403 Salvia bowleyana HOM05D001742 ORTHO05D001689 1.3e-09 65.9 43 65.1
arahy.Tifrunner.gnm1.ann1.CU7UGG Arachis hypogaea HOM05D001742 ORTHO05D001689 2.3e-09 65.1 48 58.3
CAN.G3.16 Capsicum annuum HOM05D001742 ORTHO05D001689 3.0e-09 64.7 45 66.7
Lsat_1_v5_gn_5_176820 Lactuca sativa HOM05D001742 ORTHO05D001689 3.0e-09 64.7 48 62.5
arahy.Tifrunner.gnm1.ann1.6SXA9Y Arachis hypogaea HOM05D001742 ORTHO05D001689 3.9e-09 64.3 48 58.3
HanXRQChr05g0134121 Helianthus annuus HOM05D001742 ORTHO05D001689 3.9e-09 64.3 48 58.3
Carub.0006s2898 Capsella rubella HOM05D001742 ORTHO05D001689 5.1e-09 63.9 45 62.2
ECA248G2398 Erigeron canadensis HOM05D001742 ORTHO05D001689 5.1e-09 63.9 44 68.2
BcaB05g23905 Brassica carinata HOM05D001742 ORTHO05D001689 1.9e-08 62.0 42 64.3
Cc01_g15630 Coffea canephora HOM05D001742 ORTHO05D001689 2.5e-08 61.6 44 63.6
Lsat_1_v5_gn_9_15521 Lactuca sativa HOM05D001742 ORTHO05D001689 1.6e-07 58.9 43 62.8
unitig_0.g1154 Utricularia gibba HOM05D001742 ORTHO05D001689 2.8e-07 58.2 49 44.9
Os05g0485300 Oryza sativa ssp. japonica HOM05D001742 ORTHO05D001689 3.7e-07 57.8 45 53.3
Dinv28768 Davidia involucrata HOM05D001742 ORTHO05D001689 4.1e-06 54.3 33 69.7
SEGI_09829 Sequoiadendron giganteum HOM05D001742 ORTHO05D001689 6.9e-06 53.5 41 58.5


User provided reference genes

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