Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0019604 Camellia sinensis var. sinensis HOM05D001299 ORTHO05D009516 4.0e-102 374.8 191 100.0
CSS0009698 Camellia sinensis var. sinensis HOM05D001299 ORTHO05D009516 6.8e-86 320.9 191 88.0
CSS0011897 Camellia sinensis var. sinensis HOM05D001299 ORTHO05D009516 2.0e-85 319.3 191 87.4
CSS0007995 Camellia sinensis var. sinensis HOM05D001299 ORTHO05D009516 2.1e-82 309.3 189 86.8
CSS0023575 Camellia sinensis var. sinensis HOM05D001299 ORTHO05D009516 1.4e-78 296.6 190 82.6
Actinidia32353 Actinidia chinensis HOM05D001299 ORTHO05D009516 1.3e-71 273.5 187 78.1
TAR626G1915 Trochodendron aralioides HOM05D001299 ORTHO05D009516 1.2e-69 266.9 178 78.1
GSVIVG01037941001 Vitis vinifera HOM05D001299 ORTHO05D009516 1.3e-68 263.5 179 74.3
FvH4_3g11560 Fragaria vesca HOM05D001299 ORTHO05D009516 2.2e-68 262.7 186 72.0
FAN16G0158 Fragaria x ananassa HOM05D001299 ORTHO05D009516 2.2e-68 262.7 186 72.0
FAN21G1530 Fragaria x ananassa HOM05D001299 ORTHO05D009516 2.4e-67 259.2 186 71.5
FAN25G0007 Fragaria x ananassa HOM05D001299 ORTHO05D009516 2.4e-67 259.2 186 71.0
Lj6g0006807 Lotus japonicus HOM05D001299 ORTHO05D009516 3.2e-67 258.8 179 72.1
Haze_05959 Corylus avellana HOM05D001299 ORTHO05D009516 4.2e-67 258.5 186 70.4
RcHm_v2.0_Chr5g0018511 Rosa chinensis HOM05D001299 ORTHO05D009516 4.2e-67 258.5 186 71.5
COL.COLO4_26895 Corchorus olitorius HOM05D001299 ORTHO05D009516 7.1e-67 257.7 186 71.0
Cfa000759 Carpinus fangiana HOM05D001299 ORTHO05D009516 1.6e-66 256.5 186 71.5
Potri.011G155500 Populus trichocarpa HOM05D001299 ORTHO05D009516 4.6e-66 255.0 186 71.0
MD10G1240700 Malus domestica HOM05D001299 ORTHO05D009516 1.0e-65 253.8 186 68.8
Phvul.006G122300 Phaseolus vulgaris HOM05D001299 ORTHO05D009516 1.0e-65 253.8 179 70.4
Ca_00935_v3 Cicer arietinum L. HOM05D001299 ORTHO05D009516 1.3e-65 253.4 179 71.5
Glyma.15G136200 Glycine max HOM05D001299 ORTHO05D009516 1.8e-65 253.1 179 69.8
Lalb_Chr15g0089001 Lupinus albus HOM05D001299 ORTHO05D009516 1.8e-65 253.1 179 70.9
Manes.03G067266 Manihot esculenta HOM05D001299 ORTHO05D009516 2.3e-65 252.7 179 70.9
Prupe.4G102900 Prunus persica HOM05D001299 ORTHO05D009516 5.1e-65 251.5 179 70.9
Thecc.06G007400 Theobroma cacao HOM05D001299 ORTHO05D009516 1.1e-64 250.4 186 69.9
VMungo0540G0517 Vigna mungo HOM05D001299 ORTHO05D009516 1.9e-64 249.6 179 69.3
Sabra11G0144300 Salix brachista HOM05D001299 ORTHO05D009516 5.6e-64 248.1 179 70.9
Lj1A1156T42 Lonicera japonica HOM05D001299 ORTHO05D009516 9.6e-64 247.3 186 69.4
Sed0008848 Sechium edule HOM05D001299 ORTHO05D009516 9.6e-64 247.3 179 70.4
Ciclev10015984m.g Citrus clementina HOM05D001299 ORTHO05D009516 1.3e-63 246.9 178 69.7
Duzib235G0189 Durio zibethinus HOM05D001299 ORTHO05D009516 1.3e-63 246.9 175 70.9
Cc09_g07140 Coffea canephora HOM05D001299 ORTHO05D009516 1.6e-63 246.5 177 68.4
Medtr2g032540 Medicago truncatula HOM05D001299 ORTHO05D009516 1.6e-63 246.5 178 70.2
Nn7g37865 Nelumbo nucifera HOM05D001299 ORTHO05D009516 1.6e-63 246.5 178 70.8
Psat1g163720 Pisum sativum HOM05D001299 ORTHO05D009516 2.1e-63 246.1 186 68.3
Gorai.010G142100 Gossypium raimondii HOM05D001299 ORTHO05D009516 2.8e-63 245.7 178 70.2
Gohir.D06G121900 Gossypium hirsutum HOM05D001299 ORTHO05D009516 3.6e-63 245.4 178 70.2
Eucgr.D01028 Eucalyptus grandis HOM05D001299 ORTHO05D009516 4.8e-63 245.0 186 66.7
arahy.Tifrunner.gnm1.ann1.85QD0P Arachis hypogaea HOM05D001299 ORTHO05D009516 1.1e-62 243.8 191 65.4
ClCG01G008880 Citrullus lanatus HOM05D001299 ORTHO05D009516 1.1e-62 243.8 186 67.2
TPR.G15970 Trifolium pratense HOM05D001299 ORTHO05D009516 1.4e-62 243.4 179 69.8
MSTRG.16317 Avicennia marina HOM05D001299 ORTHO05D009516 4.0e-62 241.9 178 67.4
Atru.chr10.662 Acer truncatum HOM05D001299 ORTHO05D009516 1.5e-61 240.0 187 66.8
CANSAT35G1957 Cannabis sativa HOM05D001299 ORTHO05D009516 1.5e-61 240.0 184 68.5
MBI18_g26477_MAGBIO Magnolia biondii HOM05D001299 ORTHO05D009516 2.2e-60 236.1 178 67.4
Solyc02g069620.4 Solanum lycopersicum HOM05D001299 ORTHO05D009516 2.2e-60 236.1 177 65.0
CiPaw.10G111000 Carya illinoinensis HOM05D001299 ORTHO05D009516 2.9e-60 235.7 187 66.3
Nitab4.5_0007613g0040 Nicotiana tabacum HOM05D001299 ORTHO05D009516 3.8e-60 235.3 199 59.8
SalBow8G0840 Salvia bowleyana HOM05D001299 ORTHO05D009516 3.8e-60 235.3 178 65.7
SalBow8G5388 Salvia bowleyana HOM05D001299 ORTHO05D009516 3.8e-60 235.3 178 65.7
arahy.Tifrunner.gnm1.ann1.ZN1LAP Arachis hypogaea HOM05D001299 ORTHO05D009516 4.9e-60 235.0 175 67.4
Lsat_1_v5_gn_1_130040 Lactuca sativa HOM05D001299 ORTHO05D009516 4.9e-60 235.0 180 67.2
Nitab4.5_0010415g0020 Nicotiana tabacum HOM05D001299 ORTHO05D009516 8.4e-60 234.2 199 59.8
PGSC0003DMG400021135 Solanum tuberosum HOM05D001299 ORTHO05D009516 1.4e-59 233.4 200 58.0
CAN.G675.34 Capsicum annuum HOM05D001299 ORTHO05D009516 1.9e-59 233.0 173 65.9
Sopen02g018750 Solanum pennellii HOM05D001299 ORTHO05D009516 1.9e-59 233.0 177 63.8
MELO3C021811.2 Cucumis melo HOM05D001299 ORTHO05D009516 3.2e-59 232.3 211 60.2
TWI38G0147 Tripterygium wilfordii HOM05D001299 ORTHO05D009516 1.3e-57 226.9 178 64.6
HanXRQChr11g0341271 Helianthus annuus HOM05D001299 ORTHO05D009516 1.8e-57 226.5 174 65.5
Cpa.g.sc285.1 Carica papaya HOM05D001299 ORTHO05D009516 8.7e-57 224.2 148 73.6
ATR1098G024 Amborella trichopoda HOM05D001299 ORTHO05D009516 5.6e-56 221.5 179 61.5
THA.LOC104806244 Tarenaya hassleriana HOM05D001299 ORTHO05D009516 7.4e-56 221.1 177 61.6
Migut.M01940 Erythranthe guttata HOM05D001299 ORTHO05D009516 3.7e-55 218.8 179 61.5
CsaV3_1G037750 Cucumis sativus L. HOM05D001299 ORTHO05D009516 1.4e-54 216.9 161 68.9
SGA_v2.0_scaffold298G47639 Striga asiatica HOM05D001299 ORTHO05D009516 9.0e-54 214.2 224 53.1
MBI18_g14310_MAGBIO Magnolia biondii HOM05D001299 ORTHO05D009516 1.5e-53 213.4 149 70.5
BcaC06g31610 Brassica carinata HOM05D001299 ORTHO05D009516 2.6e-53 212.6 178 58.4
A06p47140 Brassica napus HOM05D001299 ORTHO05D009516 2.6e-53 212.6 178 59.0
AL8G15300 Arabidopsis lyrata HOM05D001299 ORTHO05D009516 2.2e-52 209.5 189 56.1
BcaC06g34545 Brassica carinata HOM05D001299 ORTHO05D009516 3.8e-52 208.8 179 57.5
Os03g0781400 Oryza sativa ssp. japonica HOM05D001299 ORTHO05D009516 3.8e-52 208.8 176 59.7
BraA06t27586Z Brassica rapa HOM05D001299 ORTHO05D009516 6.5e-52 208.0 186 57.5
CSS0034631 Camellia sinensis var. sinensis HOM05D001299 ORTHO05D009516 8.4e-52 207.6 194 62.9
Thhalv10000979m.g Eutrema salsugineum HOM05D001299 ORTHO05D009516 1.4e-51 206.8 189 56.6
Sp2g09310 Schrenkiella parvula HOM05D001299 ORTHO05D009516 1.9e-51 206.5 189 56.6
Aa31LG9G8690 Aethionema arabicum HOM05D001299 ORTHO05D009516 7.1e-51 204.5 189 58.7
AT5G44520 Arabidopsis thaliana HOM05D001299 ORTHO05D009516 9.3e-51 204.1 189 55.6
BolC7t43265H Brassica oleracea HOM05D001299 ORTHO05D009516 2.1e-50 203.0 186 55.9
Carub.0008s0398 Capsella rubella HOM05D001299 ORTHO05D009516 3.5e-50 202.2 189 56.1
C07p27350 Brassica napus HOM05D001299 ORTHO05D009516 4.6e-50 201.8 186 55.4
Peaxi162Scf00195g00521 Petunia axillaris HOM05D001299 ORTHO05D009516 1.6e-47 193.4 218 49.1
Pp3c16_13350 Physcomitrium patens HOM05D001299 ORTHO05D009516 4.5e-45 185.3 178 50.0
CSS0007807 Camellia sinensis var. sinensis HOM05D001299 ORTHO05D009516 2.1e-42 176.4 181 56.9
CSS0046492 Camellia sinensis var. sinensis HOM05D001299 ORTHO05D009516 2.1e-42 176.4 181 56.9
Gohir.A06G118100 Gossypium hirsutum HOM05D001299 ORTHO05D009516 1.6e-34 150.2 110 71.8
QL05p065109 Quercus lobata HOM05D001299 ORTHO05D009516 4.1e-30 135.6 93 73.1
CDE03G0248 Ceratophyllum demersum HOM05D001299 ORTHO05D009516 2.6e-29 132.9 111 61.3
Glyma.09G030500 Glycine max HOM05D001299 ORTHO05D009516 9.4e-27 124.4 85 68.2
MCO05G574 Micromonas commoda HOM05D001299 ORTHO05D009516 8.8e-17 91.3 204 27.9
PRCOL_00006791 Prasinoderma coloniale HOM05D001299 ORTHO05D009516 5.7e-16 88.6 189 33.3
Oeu063345.2 Olea europaea HOM05D001299 ORTHO05D009516 1.3e-15 87.4 66 68.2
Lsat_1_v5_gn_3_11400 Lactuca sativa HOM05D003461 ORTHO05D004386 4.1e-14 82.4 45 77.8
Cre07.g314600 Chlamydomonas reinhardtii HOM05D001299 ORTHO05D009516 8.5e-12 74.7 176 27.8
Pp3c5_830 Physcomitrium patens HOM05D001299 ORTHO05D009516 5.5e-11 72.0 82 50.0
CARHR178590 Cardamine hirsuta HOM05D001299 ORTHO05D009516 1.6e-10 70.5 67 56.7
arahy.Tifrunner.gnm1.ann1.1LH17Q Arachis hypogaea HOM05D003836 ORTHO05D004556 2.0e-08 63.5 46 65.2
PGSC0003DMG400030509 Solanum tuberosum HOM05D001299 ORTHO05D001985 8.3e-07 58.2 170 27.1


User provided reference genes

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