Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0019600 Camellia sinensis var. sinensis HOM05D007041 ORTHO05D008036 1.5e-65 252.7 124 100.0
CSS0049473 Camellia sinensis var. sinensis HOM05D007041 ORTHO05D008036 3.4e-62 241.5 125 96.8
TAR629G2489 Trochodendron aralioides HOM05D007041 ORTHO05D008036 2.2e-21 105.9 130 46.2
QL02p031389 Quercus lobata HOM05D007041 ORTHO05D008036 6.1e-19 97.8 110 47.3
TAR636G2915 Trochodendron aralioides HOM05D007041 ORTHO05D008036 2.6e-17 92.4 117 47.9
Manes.02G012350 Manihot esculenta HOM05D007041 ORTHO05D008036 4.1e-15 85.1 115 45.2
Manes.02G012400 Manihot esculenta HOM05D007041 ORTHO05D008036 1.6e-14 83.2 115 44.3
Lj3g0003817 Lotus japonicus HOM05D007041 ORTHO05D008036 2.7e-14 82.4 116 44.8
Nitab4.5_0007594g0010 Nicotiana tabacum HOM05D007041 ORTHO05D008036 4.5e-14 81.6 118 39.0
Thecc.01G346300 Theobroma cacao HOM05D007041 ORTHO05D008036 1.7e-13 79.7 124 39.5
Prupe.2G184300 Prunus persica HOM05D007041 ORTHO05D008036 2.9e-13 79.0 118 40.7
FvH4_7g16050 Fragaria vesca HOM05D007041 ORTHO05D008036 5.0e-13 78.2 120 43.3
FAN10G1361 Fragaria x ananassa HOM05D007041 ORTHO05D008036 5.0e-13 78.2 120 43.3
Lalb_Chr17g0342361 Lupinus albus HOM05D007041 ORTHO05D008036 5.0e-13 78.2 111 37.8
Nitab4.5_0000305g0050 Nicotiana tabacum HOM05D007041 ORTHO05D008036 6.5e-13 77.8 118 37.3
CiPaw.12G084900 Carya illinoinensis HOM05D007041 ORTHO05D008036 8.5e-13 77.4 119 38.7
FAN03G1744 Fragaria x ananassa HOM05D007041 ORTHO05D008036 1.1e-12 77.0 121 43.0
FAN10G2988 Fragaria x ananassa HOM05D007041 ORTHO05D008036 1.1e-12 77.0 120 43.3
FAN06G2039 Fragaria x ananassa HOM05D007041 ORTHO05D008036 2.5e-12 75.9 120 42.5
MD07G1146000 Malus domestica HOM05D007041 ORTHO05D008036 3.2e-12 75.5 108 45.4
RcHm_v2.0_Chr1g0358991 Rosa chinensis HOM05D007041 ORTHO05D008036 4.2e-12 75.1 112 43.8
CiPaw.02G039100 Carya illinoinensis HOM05D007041 ORTHO05D008036 7.2e-12 74.3 134 37.3
Glyma.16G026800 Glycine max HOM05D007041 ORTHO05D008036 9.4e-12 73.9 118 38.1
Potri.001G094000 Populus trichocarpa HOM05D007041 ORTHO05D008036 9.4e-12 73.9 110 39.1
vmacro22517 Vaccinium macrocarpon HOM05D007041 ORTHO05D008036 1.6e-11 73.2 108 40.7
COL.COLO4_06320 Corchorus olitorius HOM05D007041 ORTHO05D008036 2.7e-11 72.4 132 38.6
Gohir.D08G147100 Gossypium hirsutum HOM05D007041 ORTHO05D008036 4.7e-11 71.6 105 42.9
Gorai.004G152600 Gossypium raimondii HOM05D007041 ORTHO05D008036 4.7e-11 71.6 105 42.9
Manes.05G025400 Manihot esculenta HOM05D007041 ORTHO05D008036 4.7e-11 71.6 113 40.7
Atru.chr5.628 Acer truncatum HOM05D007041 ORTHO05D008036 6.1e-11 71.2 108 39.8
Potri.003G137600 Populus trichocarpa HOM05D007041 ORTHO05D008036 6.1e-11 71.2 105 41.0
Rhsim01G0170200 Rhododendron simsii HOM05D007041 ORTHO05D008036 8.0e-11 70.9 44 72.7
Oeu007854.1 Olea europaea HOM05D007041 ORTHO05D008036 1.0e-10 70.5 115 38.3
EL10Ac1g00306 Beta vulgaris HOM05D007041 ORTHO05D008036 1.8e-10 69.7 70 51.4
Sabra01G0069900 Salix brachista HOM05D007041 ORTHO05D008036 1.8e-10 69.7 108 38.0
Rhsim01G0170500 Rhododendron simsii HOM05D007041 ORTHO05D008036 2.3e-10 69.3 100 41.0
Nn1g01816 Nelumbo nucifera HOM05D007041 ORTHO05D008036 3.0e-10 68.9 94 42.6
Sc01g0010130 Simmondsia chinensis HOM05D007041 ORTHO05D008036 3.0e-10 68.9 112 37.5
Actinidia28494 Actinidia chinensis HOM05D000017 ORTHO05D008036 4.0e-10 68.6 44 72.7
FAN06G3979 Fragaria x ananassa HOM05D007041 ORTHO05D008036 4.0e-10 68.6 43 72.1
Glyma.07G057800 Glycine max HOM05D007041 ORTHO05D008036 6.8e-10 67.8 112 38.4
Gohir.A12G234950 Gossypium hirsutum HOM05D007041 ORTHO05D008036 6.8e-10 67.8 105 37.1
Rhsim07G0006100 Rhododendron simsii HOM05D000337 ORTHO05D000297 6.8e-10 67.8 110 41.8
vmacro22515 Vaccinium macrocarpon HOM05D007041 ORTHO05D008036 6.8e-10 67.8 105 40.0
Cpa.g.sc2382.1 Carica papaya HOM05D007041 ORTHO05D008036 8.8e-10 67.4 55 56.4
Thhalv10006386m.g Eutrema salsugineum HOM05D007041 ORTHO05D008036 8.8e-10 67.4 111 37.8
Potri.002G168300 Populus trichocarpa HOM05D007041 ORTHO05D008036 8.8e-10 67.4 121 31.4
AT3G61660 Arabidopsis thaliana HOM05D007041 ORTHO05D008036 1.2e-09 67.0 108 39.8
Sabra14G0070100 Salix brachista HOM05D007041 ORTHO05D008036 1.2e-09 67.0 122 36.1
CiPaw.01G073300 Carya illinoinensis HOM05D007041 ORTHO05D008036 1.5e-09 66.6 44 65.9
vmacro22516 Vaccinium macrocarpon HOM05D007041 ORTHO05D008036 1.5e-09 66.6 106 40.6
Peaxi162Scf00843g00001 Petunia axillaris HOM05D007041 ORTHO05D008036 2.0e-09 66.2 118 35.6
Gorai.008G252800 Gossypium raimondii HOM05D007041 ORTHO05D008036 2.6e-09 65.9 105 36.2
AL5G44060 Arabidopsis lyrata HOM05D007041 ORTHO05D008036 3.4e-09 65.5 108 42.6
Rhsim07G0083800 Rhododendron simsii HOM05D007041 ORTHO05D008036 3.4e-09 65.5 83 44.6
Gohir.D12G236050 Gossypium hirsutum HOM05D007041 ORTHO05D008036 4.4e-09 65.1 105 36.2
Gorai.001G156400 Gossypium raimondii HOM05D007041 ORTHO05D008036 5.7e-09 64.7 102 41.2
VMungo0331G1585 Vigna mungo HOM05D007041 ORTHO05D008036 5.7e-09 64.7 39 66.7
A09p53730 Brassica napus HOM05D007041 ORTHO05D008036 7.5e-09 64.3 111 36.9
BraA09t40795Z Brassica rapa HOM05D007041 ORTHO05D008036 7.5e-09 64.3 111 36.9
Oeu009948.1 Olea europaea HOM05D007041 ORTHO05D008036 7.5e-09 64.3 100 40.0
Phvul.010G111500 Phaseolus vulgaris HOM05D007041 ORTHO05D008036 7.5e-09 64.3 40 65.0
MELO3C006045.2 Cucumis melo HOM05D007041 ORTHO05D008036 9.8e-09 63.9 116 39.7
Nn3g19073 Nelumbo nucifera HOM05D007041 ORTHO05D008036 9.8e-09 63.9 134 35.1
SalBow3G2736 Salvia bowleyana HOM05D007041 ORTHO05D008036 9.8e-09 63.9 99 39.4
Prupe.5G115500 Prunus persica HOM05D007041 ORTHO05D008036 1.3e-08 63.5 114 36.8
Sp5g01745 Schrenkiella parvula HOM05D007041 ORTHO05D008036 1.3e-08 63.5 35 71.4
CSS0039531 Camellia sinensis var. sinensis HOM05D007041 ORTHO05D008036 1.7e-08 63.2 61 47.5
Gohir.D07G144400 Gossypium hirsutum HOM05D007041 ORTHO05D008036 1.7e-08 63.2 102 40.2
Thecc.03G293400 Theobroma cacao HOM05D007041 ORTHO05D008036 1.7e-08 63.2 97 42.3
CANSAT56G1227 Cannabis sativa HOM05D007041 ORTHO05D008036 2.2e-08 62.8 102 42.2
CARHR171970 Cardamine hirsuta HOM05D007041 ORTHO05D008036 2.2e-08 62.8 113 35.4
Potri.014G095600 Populus trichocarpa HOM05D007041 ORTHO05D008036 2.2e-08 62.8 131 32.8
Medtr8g027905 Medicago truncatula HOM05D001941 ORTHO05D008036 2.8e-08 62.4 54 55.6
Oeu007855.1 Olea europaea HOM05D007041 ORTHO05D008036 2.8e-08 62.4 92 38.0
C08p36510 Brassica napus HOM05D007041 ORTHO05D008036 3.7e-08 62.0 111 37.8
BolC8t51234H Brassica oleracea HOM05D007041 ORTHO05D008036 3.7e-08 62.0 111 37.8
Haze_08658 Corylus avellana HOM05D007041 ORTHO05D008036 3.7e-08 62.0 72 45.8
CsaV3_3G008250 Cucumis sativus L. HOM05D007041 ORTHO05D008036 3.7e-08 62.0 33 75.8
Carub.0005s2835 Capsella rubella HOM05D007041 ORTHO05D008036 6.3e-08 61.2 119 33.6
Gohir.A07G139300 Gossypium hirsutum HOM05D007041 ORTHO05D008036 6.3e-08 61.2 101 36.6
Lsat_1_v5_gn_7_2180 Lactuca sativa HOM05D007041 ORTHO05D008036 6.3e-08 61.2 112 38.4
arahy.Tifrunner.gnm1.ann1.JU2T19 Arachis hypogaea HOM05D007041 ORTHO05D008036 8.3e-08 60.8 34 73.5
arahy.Tifrunner.gnm1.ann1.LKBY4F Arachis hypogaea HOM05D007041 ORTHO05D008036 8.3e-08 60.8 34 73.5
Sed0010994 Sechium edule HOM05D007041 ORTHO05D008036 8.3e-08 60.8 31 80.6
Glyma.19G254100 Glycine max HOM05D007041 ORTHO05D008036 1.4e-07 60.1 110 38.2
Manes.01G248300 Manihot esculenta HOM05D007041 ORTHO05D008036 1.4e-07 60.1 108 39.8
RcHm_v2.0_Chr7g0195411 Rosa chinensis HOM05D017100 ORTHO05D008036 1.8e-07 59.7 47 61.7
arahy.Tifrunner.gnm1.ann1.3XXF02 Arachis hypogaea HOM05D007041 ORTHO05D008036 2.4e-07 59.3 38 68.4
Ca_09497_v3 Cicer arietinum L. HOM05D007041 ORTHO05D008036 2.4e-07 59.3 109 37.6
Zm00001eb310140 Zea mays HOM05D007041 ORTHO05D008036 2.4e-07 59.3 44 52.3
Zm00001eb441140 Zea mays HOM05D007041 ORTHO05D008036 2.4e-07 59.3 44 52.3
MSTRG.13877 Avicennia marina HOM05D007041 ORTHO05D008036 5.4e-07 58.2 41 58.5
Medtr8g027305 Medicago truncatula HOM05D007041 ORTHO05D008036 5.4e-07 58.2 39 64.1
Nn2g15118 Nelumbo nucifera HOM05D007041 ORTHO05D008036 5.4e-07 58.2 95 40.0
Medtr7g117120 Medicago truncatula HOM05D007041 ORTHO05D008036 7.0e-07 57.8 104 35.6
ECA236G3839 Erigeron canadensis HOM05D007041 ORTHO05D008036 1.6e-06 56.6 126 34.1
FvH4_5g04090 Fragaria vesca HOM05D017100 ORTHO05D008036 2.0e-06 56.2 32 71.9
FAN13G1599 Fragaria x ananassa HOM05D017100 ORTHO05D008036 2.0e-06 56.2 32 71.9
FAN18G0435 Fragaria x ananassa HOM05D017100 ORTHO05D008036 2.0e-06 56.2 32 71.9
FAN18G2618 Fragaria x ananassa HOM05D017100 ORTHO05D008036 2.0e-06 56.2 32 71.9
Sabra02G0143600 Salix brachista HOM05D007041 ORTHO05D008036 2.0e-06 56.2 106 32.1
AUR62023489 Chenopodium quinoa HOM05D007041 ORTHO05D008036 2.7e-06 55.8 33 72.7
Sopen08g030330 Solanum pennellii HOM05D002045 ORTHO05D002014 2.7e-06 55.8 30 76.7
TPR.G7661 Trifolium pratense HOM05D007041 ORTHO05D008036 2.7e-06 55.8 120 35.0
HPP92_007621 Vanilla planifolia HOM05D007041 ORTHO05D008036 2.7e-06 55.8 29 75.9
Migut.B01841 Erythranthe guttata HOM05D007041 ORTHO05D008036 3.5e-06 55.5 94 36.2
Nitab4.5_0000223g0230 Nicotiana tabacum HOM05D007041 ORTHO05D008036 5.9e-06 54.7 71 38.0
Nitab4.5_0004161g0040 Nicotiana tabacum HOM05D007041 ORTHO05D008036 5.9e-06 54.7 64 43.8
PGSC0003DMG400000096 Solanum tuberosum HOM05D007041 ORTHO05D008036 5.9e-06 54.7 48 52.1
HPP92_005512 Vanilla planifolia HOM05D007041 ORTHO05D008036 5.9e-06 54.7 60 46.7


User provided reference genes

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