Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0019596 Camellia sinensis var. sinensis HOM05D004006 ORTHO05D004585 3.0e-119 431.8 209 100.0
Dinv27317 Davidia involucrata HOM05D004006 ORTHO05D004585 1.8e-63 246.5 213 64.8
Hma1.2p1_0186F.1_g081800 Hydrangea macrophylla HOM05D004006 ORTHO05D004585 4.0e-63 245.4 216 65.3
CSS0040709 Camellia sinensis var. sinensis HOM05D004006 ORTHO05D004585 2.6e-62 242.7 216 64.8
Manes.18G077000 Manihot esculenta HOM05D004006 ORTHO05D004585 6.4e-61 238.0 216 58.8
Thecc.08G124900 Theobroma cacao HOM05D004006 ORTHO05D004585 1.9e-60 236.5 221 62.4
Eucgr.F04353 Eucalyptus grandis HOM05D004006 ORTHO05D004585 1.6e-59 233.4 237 55.7
vmacro00834 Vaccinium macrocarpon HOM05D004006 ORTHO05D004585 1.6e-59 233.4 209 66.0
Duzib093G0488 Durio zibethinus HOM05D004006 ORTHO05D004585 4.6e-59 231.9 212 59.9
Actinidia21321 Actinidia chinensis HOM05D004006 ORTHO05D004585 7.8e-59 231.1 215 62.8
Nn1g08787 Nelumbo nucifera HOM05D004006 ORTHO05D004585 1.3e-58 230.3 215 61.4
Nn5g28281 Nelumbo nucifera HOM05D004006 ORTHO05D004585 1.7e-58 229.9 213 60.1
TWI56G0850 Tripterygium wilfordii HOM05D004006 ORTHO05D004585 5.6e-57 224.9 220 58.2
Duzib116G0782 Durio zibethinus HOM05D004006 ORTHO05D004585 1.2e-56 223.8 215 57.2
Potri.002G083900 Populus trichocarpa HOM05D004006 ORTHO05D004585 4.7e-56 221.9 216 56.5
COL.COLO4_35922 Corchorus olitorius HOM05D004006 ORTHO05D004585 6.2e-56 221.5 214 56.5
TWI36G0058 Tripterygium wilfordii HOM05D004006 ORTHO05D004585 3.1e-55 219.2 229 55.0
PGR044G2543 Punica granatum HOM05D004006 ORTHO05D004585 6.8e-55 218.0 236 52.5
Rhsim06G0103600 Rhododendron simsii HOM05D004006 ORTHO05D004585 8.9e-55 217.6 215 59.1
TAR628G0258 Trochodendron aralioides HOM05D004006 ORTHO05D004585 7.5e-54 214.5 207 58.5
FAN24G3177 Fragaria x ananassa HOM05D004006 ORTHO05D004585 9.9e-54 214.2 208 61.5
FAN27G3464 Fragaria x ananassa HOM05D004006 ORTHO05D004585 2.9e-53 212.6 208 61.1
CiPaw.06G030700 Carya illinoinensis HOM05D004006 ORTHO05D004585 4.9e-53 211.8 225 55.1
Manes.02G162900 Manihot esculenta HOM05D004006 ORTHO05D004585 8.3e-53 211.1 215 53.0
RcHm_v2.0_Chr6g0295711 Rosa chinensis HOM05D004006 ORTHO05D004585 8.3e-53 211.1 204 58.3
FvH4_2g26860 Fragaria vesca HOM05D004006 ORTHO05D004585 1.9e-52 209.9 207 60.9
Cfa016015 Carpinus fangiana HOM05D004006 ORTHO05D004585 2.4e-52 209.5 216 54.6
Lj7P340T24 Lonicera japonica HOM05D004006 ORTHO05D004585 3.2e-52 209.1 200 55.0
FAN20G2831 Fragaria x ananassa HOM05D004006 ORTHO05D004585 7.1e-52 208.0 208 60.1
Prupe.1G498100 Prunus persica HOM05D004006 ORTHO05D004585 9.2e-52 207.6 217 56.7
RhsimUnG0092700 Rhododendron simsii HOM05D004006 ORTHO05D004585 9.2e-52 207.6 210 58.6
Haze_00445 Corylus avellana HOM05D004006 ORTHO05D004585 6.0e-51 204.9 218 54.6
Gohir.D01G180600 Gossypium hirsutum HOM05D004006 ORTHO05D004585 1.3e-50 203.8 218 57.8
Gorai.002G222000 Gossypium raimondii HOM05D004006 ORTHO05D004585 1.3e-50 203.8 218 57.8
Lj1g0016270 Lotus japonicus HOM05D004006 ORTHO05D004585 3.9e-50 202.2 210 52.9
Gorai.009G245700 Gossypium raimondii HOM05D004006 ORTHO05D004585 8.6e-50 201.1 220 55.5
Gohir.A01G188900 Gossypium hirsutum HOM05D004006 ORTHO05D004585 1.1e-49 200.7 218 56.9
Gohir.A05G235000 Gossypium hirsutum HOM05D004006 ORTHO05D004585 5.6e-49 198.4 220 54.5
Gohir.D05G237300 Gossypium hirsutum HOM05D004006 ORTHO05D004585 5.6e-49 198.4 220 55.0
GSVIVG01008871001 Vitis vinifera HOM05D004006 ORTHO05D004585 7.3e-49 198.0 188 59.6
Glyma.04G249900 Glycine max HOM05D004006 ORTHO05D004585 1.2e-48 197.2 216 54.2
MD15G1349700 Malus domestica HOM05D004006 ORTHO05D004585 1.2e-48 197.2 224 54.9
Cc10_g11860 Coffea canephora HOM05D004006 ORTHO05D004585 2.8e-48 196.1 214 50.9
Potri.005G177600 Populus trichocarpa HOM05D004006 ORTHO05D004585 2.8e-48 196.1 212 51.9
THA.LOC104800196 Tarenaya hassleriana HOM05D004006 ORTHO05D004585 3.6e-48 195.7 217 56.2
Aqoxy6G00215 Aquilegia oxysepala HOM05D004006 ORTHO05D004585 4.7e-48 195.3 229 51.5
TPR.G21067 Trifolium pratense HOM05D004006 ORTHO05D004585 4.7e-48 195.3 231 48.9
Phvul.009G124900 Phaseolus vulgaris HOM05D004006 ORTHO05D004585 6.2e-48 194.9 211 50.2
Actinidia29465 Actinidia chinensis HOM05D004006 ORTHO05D004585 1.1e-47 194.1 224 53.6
Glyma.06G113000 Glycine max HOM05D004006 ORTHO05D004585 1.1e-47 194.1 214 54.2
MD08G1163000 Malus domestica HOM05D004006 ORTHO05D004585 1.8e-47 193.4 218 53.7
THA.LOC104813655 Tarenaya hassleriana HOM05D004006 ORTHO05D004585 3.1e-47 192.6 215 54.9
Ca_16556_v3 Cicer arietinum L. HOM05D004006 ORTHO05D004585 1.5e-46 190.3 226 47.3
Actinidia03470 Actinidia chinensis HOM05D004006 ORTHO05D004585 2.6e-46 189.5 190 59.5
TAR376G1087 Trochodendron aralioides HOM05D004006 ORTHO05D004585 7.6e-46 188.0 204 53.4
Lalb_Chr10g0101721 Lupinus albus HOM05D004006 ORTHO05D004585 2.2e-45 186.4 215 52.1
Lalb_Chr08g0241451 Lupinus albus HOM05D004006 ORTHO05D004585 2.9e-45 186.0 216 49.5
Sed0014468 Sechium edule HOM05D004006 ORTHO05D004585 2.9e-45 186.0 209 53.6
Ciclev10002301m.g Citrus clementina HOM05D004006 ORTHO05D004585 6.4e-45 184.9 239 49.8
Lalb_Chr23g0271011 Lupinus albus HOM05D004006 ORTHO05D004585 1.1e-44 184.1 208 48.6
Gorai.005G089800 Gossypium raimondii HOM05D004006 ORTHO05D004585 1.4e-44 183.7 222 49.5
MSTRG.22410 Avicennia marina HOM05D004006 ORTHO05D004585 1.9e-44 183.3 209 49.3
Peaxi162Scf00018g00027 Petunia axillaris HOM05D004006 ORTHO05D004585 1.9e-44 183.3 226 46.9
Oeu050916.1 Olea europaea HOM05D004006 ORTHO05D004585 3.2e-44 182.6 209 51.7
Oeu050917.2 Olea europaea HOM05D004006 ORTHO05D004585 4.2e-44 182.2 209 51.7
arahy.Tifrunner.gnm1.ann1.J26PKP Arachis hypogaea HOM05D004006 ORTHO05D004585 7.1e-44 181.4 223 45.7
Duzib041G0805 Durio zibethinus HOM05D004006 ORTHO05D004585 9.2e-44 181.0 178 54.5
arahy.Tifrunner.gnm1.ann1.CFE04G Arachis hypogaea HOM05D004006 ORTHO05D004585 1.2e-43 180.6 222 46.8
Glyma.13G079800 Glycine max HOM05D004006 ORTHO05D004585 1.6e-43 180.3 205 46.8
ClCG08G005630 Citrullus lanatus HOM05D004006 ORTHO05D004585 2.7e-43 179.5 209 54.1
CsaV3_6G034510 Cucumis sativus L. HOM05D004006 ORTHO05D004585 2.7e-43 179.5 209 53.1
Gohir.A02G073100 Gossypium hirsutum HOM05D004006 ORTHO05D004585 3.5e-43 179.1 220 48.6
MELO3C010605.2 Cucumis melo HOM05D004006 ORTHO05D004585 6.0e-43 178.3 209 53.1
PGSC0003DMG400027788 Solanum tuberosum HOM05D004006 ORTHO05D004585 7.8e-43 177.9 213 48.8
AL1G35020 Arabidopsis lyrata HOM05D004006 ORTHO05D004585 1.0e-42 177.6 212 50.0
Dinv07222 Davidia involucrata HOM05D004006 ORTHO05D004585 1.0e-42 177.6 156 64.7
CARHR022190 Cardamine hirsuta HOM05D004006 ORTHO05D004585 1.7e-42 176.8 210 50.5
MSTRG.1442 Avicennia marina HOM05D004006 ORTHO05D004585 2.3e-42 176.4 203 51.7
CANSAT25G0779 Cannabis sativa HOM05D004006 ORTHO05D004585 3.9e-42 175.6 248 43.1
Thhalv10008805m.g Eutrema salsugineum HOM05D004006 ORTHO05D004585 3.9e-42 175.6 211 50.2
SGA_v2.0_scaffold52G18967 Striga asiatica HOM05D004006 ORTHO05D004585 5.1e-42 175.3 215 51.2
Gohir.D02G080400 Gossypium hirsutum HOM05D004006 ORTHO05D004585 6.6e-42 174.9 214 48.6
Medtr3g088010 Medicago truncatula HOM05D004006 ORTHO05D004585 1.5e-41 173.7 225 47.1
Carub.0001s2127 Capsella rubella HOM05D004006 ORTHO05D004585 2.5e-41 172.9 213 49.3
VMungo1309G2318 Vigna mungo HOM05D004006 ORTHO05D004585 4.3e-41 172.2 211 47.4
AT1G21830 Arabidopsis thaliana HOM05D004006 ORTHO05D004585 9.6e-41 171.0 212 47.6
BcaC07g39124 Brassica carinata HOM05D004006 ORTHO05D004585 1.6e-40 170.2 210 48.6
C08p21130 Brassica napus HOM05D004006 ORTHO05D004585 1.6e-40 170.2 210 48.6
BolC8t49750H Brassica oleracea HOM05D004006 ORTHO05D004585 1.6e-40 170.2 210 48.6
Nitab4.5_0016080g0010 Nicotiana tabacum HOM05D004006 ORTHO05D004585 2.1e-40 169.9 217 49.3
A08p28790 Brassica napus HOM05D004006 ORTHO05D004585 4.8e-40 168.7 210 49.5
BraA08t34808Z Brassica rapa HOM05D004006 ORTHO05D004585 4.8e-40 168.7 210 49.5
Sp1g19380 Schrenkiella parvula HOM05D004006 ORTHO05D004585 4.8e-40 168.7 210 49.5
Solyc11g013450.2 Solanum lycopersicum HOM05D004006 ORTHO05D004585 1.8e-39 166.8 215 45.1
Hund17292 Selenicereus undatus HOM05D004006 ORTHO05D004585 6.9e-39 164.9 238 46.2
BcaB07g32181 Brassica carinata HOM05D004006 ORTHO05D004585 1.2e-38 164.1 212 45.8
BcaC05g26103 Brassica carinata HOM05D004006 ORTHO05D004585 1.2e-38 164.1 212 45.8
C05p20810 Brassica napus HOM05D004006 ORTHO05D004585 1.2e-38 164.1 212 45.8
A06p17910 Brassica napus HOM05D004006 ORTHO05D004585 1.5e-38 163.7 212 47.2
BraA06t24881Z Brassica rapa HOM05D004006 ORTHO05D004585 2.0e-38 163.3 212 46.7
MBI16_g07656_MAGBIO Magnolia biondii HOM05D004006 ORTHO05D004585 2.6e-38 162.9 192 53.1
BcaB03g14254 Brassica carinata HOM05D004006 ORTHO05D004585 3.4e-38 162.5 208 48.1
BcaB07g32179 Brassica carinata HOM05D004006 ORTHO05D004585 3.4e-38 162.5 212 49.1
A07p14920 Brassica napus HOM05D004006 ORTHO05D004585 3.4e-38 162.5 214 47.7
BolC5t30780H Brassica oleracea HOM05D004006 ORTHO05D004585 3.4e-38 162.5 212 45.3
BraA07t29235Z Brassica rapa HOM05D004006 ORTHO05D004585 3.4e-38 162.5 214 47.7
Psat5g087920 Pisum sativum HOM05D004006 ORTHO05D004585 5.8e-38 161.8 210 46.2
Nitab4.5_0000051g0220 Nicotiana tabacum HOM05D004006 ORTHO05D004585 7.6e-38 161.4 217 47.0
Atru.chr13.1448 Acer truncatum HOM05D004006 ORTHO05D004585 1.3e-37 160.6 211 47.4
Atru.chr13.1472 Acer truncatum HOM05D004006 ORTHO05D004585 1.3e-37 160.6 211 47.4
BcaC06g34904 Brassica carinata HOM05D004006 ORTHO05D004585 1.7e-37 160.2 214 47.2
C07p21950 Brassica napus HOM05D004006 ORTHO05D004585 1.7e-37 160.2 214 47.2
BolC7t42725H Brassica oleracea HOM05D004006 ORTHO05D004585 1.7e-37 160.2 214 47.2
Migut.C01125 Erythranthe guttata HOM05D004006 ORTHO05D004585 1.7e-37 160.2 208 47.1
CDE02G3357 Ceratophyllum demersum HOM05D004006 ORTHO05D004585 2.2e-37 159.8 206 48.5
EL10Ac1g01007 Beta vulgaris HOM05D004006 ORTHO05D004585 4.9e-37 158.7 241 44.8
Oeu047951.1 Olea europaea HOM05D004006 ORTHO05D004585 4.9e-37 158.7 198 48.0
Oeu059434.1 Olea europaea HOM05D004006 ORTHO05D004585 1.9e-36 156.8 198 46.0
DCAR_014087 Daucus carota HOM05D004006 ORTHO05D004585 2.4e-36 156.4 198 53.5
Glyma.14G150000 Glycine max HOM05D004006 ORTHO05D004585 7.1e-36 154.8 194 46.4
BcaB03g11881 Brassica carinata HOM05D004006 ORTHO05D004585 1.6e-35 153.7 198 46.5
MSTRG.25384 Avicennia marina HOM05D004006 ORTHO05D004585 2.1e-35 153.3 209 48.8
Oeu026152.1 Olea europaea HOM05D004006 ORTHO05D004585 3.5e-35 152.5 198 47.0
PSO170G2295 Papaver somniferum HOM05D004006 ORTHO05D004585 1.3e-34 150.6 256 41.0
MBI09_g12159_MAGBIO Magnolia biondii HOM05D004006 ORTHO05D004585 5.1e-34 148.7 189 45.0
PSO528G0204 Papaver somniferum HOM05D004006 ORTHO05D004585 1.1e-33 147.5 253 39.5
CDE08G0380 Ceratophyllum demersum HOM05D004006 ORTHO05D004585 3.3e-33 146.0 185 48.6
ATR0584G004 Amborella trichopoda HOM05D004006 ORTHO05D004585 2.8e-32 142.9 205 43.4
Gorai.009G283200 Gossypium raimondii HOM05D004006 ORTHO05D004585 3.6e-32 142.5 173 50.9
Gohir.D05G270600 Gossypium hirsutum HOM05D004006 ORTHO05D004585 6.2e-32 141.7 173 50.3
Lsat_1_v5_gn_5_101481 Lactuca sativa HOM05D004006 ORTHO05D004585 3.8e-29 132.5 206 42.2
Sopen11g008440 Solanum pennellii HOM05D004006 ORTHO05D004585 3.8e-29 132.5 151 49.7
SGA_v2.0_scaffold24G10460 Striga asiatica HOM05D004006 ORTHO05D004585 4.9e-29 132.1 171 45.0
THA.LOC104817318 Tarenaya hassleriana HOM05D004006 ORTHO05D004585 1.4e-28 130.6 211 41.2
SalBow6G7056 Salvia bowleyana HOM05D004006 ORTHO05D004585 2.4e-28 129.8 172 45.3
HanXRQChr04g0125261 Helianthus annuus HOM05D004006 ORTHO05D004585 4.2e-28 129.0 212 42.9
Migut.N03284 Erythranthe guttata HOM05D004006 ORTHO05D004585 5.4e-28 128.6 187 41.2
THA.LOC104806821 Tarenaya hassleriana HOM05D004006 ORTHO05D004585 7.1e-28 128.3 209 38.8
Hund26811 Selenicereus undatus HOM05D004006 ORTHO05D004585 1.6e-27 127.1 176 45.5
Os04g0690500 Oryza sativa ssp. japonica HOM05D004006 ORTHO05D004585 3.5e-27 125.9 226 40.3
SGA_v2.0_scaffold25G11123 Striga asiatica HOM05D004006 ORTHO05D004585 6.0e-27 125.2 179 41.9
Cpa.g.sc64.85 Carica papaya HOM05D004006 ORTHO05D004585 3.9e-26 122.5 128 51.6
SalBow7G3581 Salvia bowleyana HOM05D004006 ORTHO05D004585 3.9e-26 122.5 206 40.3
Carub.0001s3524 Capsella rubella HOM05D004006 ORTHO05D004585 2.5e-25 119.8 208 35.1
CARHR035970 Cardamine hirsuta HOM05D004006 ORTHO05D004585 3.3e-25 119.4 208 38.9
HPP92_011945 Vanilla planifolia HOM05D004006 ORTHO05D004585 3.3e-25 119.4 204 37.7
AL1G52380 Arabidopsis lyrata HOM05D004006 ORTHO05D004585 2.6e-22 109.8 206 36.4
CDE06G0283 Ceratophyllum demersum HOM05D004006 ORTHO05D004585 2.9e-21 106.3 180 41.7
Gohir.A05G268750 Gossypium hirsutum HOM05D004006 ORTHO05D004585 4.9e-21 105.5 127 51.2
Sabra02G0065700 Salix brachista HOM05D004006 ORTHO05D004585 8.4e-21 104.8 101 54.5
Sabra05G0134100 Salix brachista HOM05D004006 ORTHO05D004585 8.4e-21 104.8 95 50.5
Thhalv10011817m.g Eutrema salsugineum HOM05D004006 ORTHO05D004585 2.7e-19 99.8 168 38.7
CDE08G1629 Ceratophyllum demersum HOM05D004006 ORTHO05D004585 7.9e-19 98.2 174 39.7
AT1G44608 Arabidopsis thaliana HOM05D004006 ORTHO05D004585 1.1e-17 94.4 195 34.4
Aa31LG7G5780 Aethionema arabicum HOM05D004006 ORTHO05D004585 1.9e-17 93.6 170 40.6
AUR62014339 Chenopodium quinoa HOM05D004006 ORTHO05D004585 9.6e-17 91.3 132 48.5
Phvul.008G163001 Phaseolus vulgaris HOM05D004006 ORTHO05D004585 4.8e-16 89.0 92 52.2
Sp1g33590 Schrenkiella parvula HOM05D004006 ORTHO05D004585 6.2e-16 88.6 200 35.5
VMungo0647G0089 Vigna mungo HOM05D004006 ORTHO05D004585 6.2e-16 88.6 109 45.0
PSO017G3194 Papaver somniferum HOM05D004006 ORTHO05D004585 1.4e-15 87.4 242 32.6
HPP92_011964 Vanilla planifolia HOM05D004006 ORTHO05D004585 1.8e-15 87.0 201 31.8
BcaC08g42859 Brassica carinata HOM05D004006 ORTHO05D004585 5.3e-15 85.5 170 37.1
C06p00700 Brassica napus HOM05D004006 ORTHO05D004585 5.3e-15 85.5 170 37.1
BolC6t35208H Brassica oleracea HOM05D004006 ORTHO05D004585 6.9e-15 85.1 170 36.5
Lj4C625T3 Lonicera japonica HOM05D004006 ORTHO05D004585 1.5e-14 84.0 84 57.1
A10p07490 Brassica napus HOM05D004006 ORTHO05D004585 2.0e-14 83.6 170 37.1
BraSC36t46058Z Brassica rapa HOM05D004006 ORTHO05D004585 2.0e-14 83.6 170 37.1
VMungo0647G1885 Vigna mungo HOM05D004006 ORTHO05D004585 4.5e-14 82.4 90 47.8
unitig_46.g18107 Utricularia gibba HOM05D004006 ORTHO05D004585 7.6e-14 81.6 175 34.3
Aa31LG6G9320 Aethionema arabicum HOM05D004006 ORTHO05D004585 8.4e-13 78.2 191 34.0
CDE12G0877 Ceratophyllum demersum HOM05D004006 ORTHO05D004585 1.6e-11 73.9 110 38.2
Nn5g27936 Nelumbo nucifera HOM05D004006 ORTHO05D004585 4.3e-09 65.9 114 40.4


User provided reference genes

Program Settings