Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0019593 Camellia sinensis var. sinensis HOM05D004801 ORTHO05D005747 1.2e-133 479.9 267 100.0
CSS0042810 Camellia sinensis var. sinensis HOM05D004801 ORTHO05D005747 1.5e-78 297.0 268 71.3
Hma1.2p1_0002F.1_g001940 Hydrangea macrophylla HOM05D004801 ORTHO05D005747 2.1e-56 223.4 270 55.9
Dinv23632 Davidia involucrata HOM05D004801 ORTHO05D005747 7.9e-56 221.5 270 58.5
Actinidia11029 Actinidia chinensis HOM05D004801 ORTHO05D005747 1.0e-55 221.1 269 54.6
vmacro12308 Vaccinium macrocarpon HOM05D004801 ORTHO05D005747 7.9e-48 194.9 270 53.0
ClCG00G003550 Citrullus lanatus HOM05D004801 ORTHO05D005747 5.1e-47 192.2 267 46.8
ClCG07G002870 Citrullus lanatus HOM05D004801 ORTHO05D005747 5.1e-47 192.2 267 46.8
MELO3C018732.2 Cucumis melo HOM05D004801 ORTHO05D005747 9.7e-46 188.0 268 44.8
Sed0013547 Sechium edule HOM05D004801 ORTHO05D005747 5.3e-44 182.2 264 44.3
CsaV3_7G004470 Cucumis sativus L. HOM05D004801 ORTHO05D005747 9.0e-44 181.4 268 44.0
Prupe.3G132500 Prunus persica HOM05D004801 ORTHO05D005747 3.4e-43 179.5 265 46.4
Manes.13G146300 Manihot esculenta HOM05D004801 ORTHO05D005747 1.7e-42 177.2 269 44.6
Oeu019133.1 Olea europaea HOM05D004801 ORTHO05D005747 1.4e-41 174.1 267 47.2
MD17G1239900 Malus domestica HOM05D004801 ORTHO05D005747 1.4e-39 167.5 265 43.8
Gorai.005G201200 Gossypium raimondii HOM05D004801 ORTHO05D005747 1.8e-39 167.2 270 43.7
Gohir.A03G156300 Gossypium hirsutum HOM05D004801 ORTHO05D005747 2.3e-39 166.8 267 43.1
Ah.08g215280 Amaranthus hybridus HOM05D004801 ORTHO05D005747 3.0e-39 166.4 272 43.4
Lj3g0028176 Lotus japonicus HOM05D004801 ORTHO05D005747 3.0e-39 166.4 274 41.2
Sed0002865 Sechium edule HOM05D004801 ORTHO05D005747 3.9e-39 166.0 269 46.1
CiPaw.03G177800 Carya illinoinensis HOM05D004801 ORTHO05D005747 6.7e-39 165.2 213 48.8
QL08p038965 Quercus lobata HOM05D004801 ORTHO05D005747 8.8e-39 164.9 266 42.9
Haze_13169 Corylus avellana HOM05D004801 ORTHO05D005747 1.5e-38 164.1 268 42.9
Sopen10g004180 Solanum pennellii HOM05D004801 ORTHO05D005747 3.3e-38 162.9 266 45.9
Lalb_Chr24g0399901 Lupinus albus HOM05D004801 ORTHO05D005747 4.3e-38 162.5 272 42.6
Duzib132G1264 Durio zibethinus HOM05D004801 ORTHO05D005747 5.7e-38 162.2 266 41.7
TWI36G1772 Tripterygium wilfordii HOM05D004801 ORTHO05D005747 7.4e-38 161.8 269 49.1
Cfa014619 Carpinus fangiana HOM05D004801 ORTHO05D005747 9.7e-38 161.4 268 44.0
Sc21g0002890 Simmondsia chinensis HOM05D004801 ORTHO05D005747 1.7e-37 160.6 275 42.2
Cc05_g07190 Coffea canephora HOM05D004801 ORTHO05D005747 3.7e-37 159.5 266 47.0
TAR626G1782 Trochodendron aralioides HOM05D004801 ORTHO05D005747 3.7e-37 159.5 290 40.0
Duzib248G0607 Durio zibethinus HOM05D004801 ORTHO05D005747 4.8e-37 159.1 269 43.1
Dinv26411 Davidia involucrata HOM05D004801 ORTHO05D005747 6.3e-37 158.7 267 47.9
Solyc10g008320.1 Solanum lycopersicum HOM05D004801 ORTHO05D005747 6.3e-37 158.7 266 45.1
SGA_v2.0_scaffold70G23526 Striga asiatica HOM05D004801 ORTHO05D005747 1.4e-36 157.5 264 45.5
Glyma.12G204500 Glycine max HOM05D004801 ORTHO05D005747 2.4e-36 156.8 267 42.7
Gohir.D02G179400 Gossypium hirsutum HOM05D004801 ORTHO05D005747 2.4e-36 156.8 267 47.2
Rhsim06G0141800 Rhododendron simsii HOM05D004801 ORTHO05D005747 2.4e-36 156.8 180 58.9
PGSC0003DMG400013144 Solanum tuberosum HOM05D004801 ORTHO05D005747 3.1e-36 156.4 263 44.1
Glyma.12G204600 Glycine max HOM05D004801 ORTHO05D005747 4.1e-36 156.0 267 43.8
Thecc.02G180400 Theobroma cacao HOM05D004801 ORTHO05D005747 4.1e-36 156.0 274 41.6
AUR62022461 Chenopodium quinoa HOM05D004801 ORTHO05D005747 3.4e-35 152.9 276 40.9
COL.COLO4_30200 Corchorus olitorius HOM05D004801 ORTHO05D005747 3.4e-35 152.9 276 42.8
EL10Ac9g20770 Beta vulgaris HOM05D004801 ORTHO05D005747 4.5e-35 152.5 277 42.6
Migut.M00296 Erythranthe guttata HOM05D004801 ORTHO05D005747 4.5e-35 152.5 268 43.3
Gohir.D04G142900 Gossypium hirsutum HOM05D004801 ORTHO05D005747 4.5e-35 152.5 267 46.8
RcHm_v2.0_Chr2g0126621 Rosa chinensis HOM05D004801 ORTHO05D005747 4.5e-35 152.5 264 42.8
DCAR_013013 Daucus carota HOM05D004801 ORTHO05D005747 5.9e-35 152.1 266 40.2
Gorai.012G128300 Gossypium raimondii HOM05D004801 ORTHO05D005747 5.9e-35 152.1 267 46.1
Phvul.004G108100 Phaseolus vulgaris HOM05D004801 ORTHO05D005747 1.3e-34 151.0 266 45.5
ECA234G0944 Erigeron canadensis HOM05D004801 ORTHO05D005747 8.5e-34 148.3 242 46.3
AUR62040063 Chenopodium quinoa HOM05D004801 ORTHO05D005747 1.1e-33 147.9 280 46.1
VMungo0464G0320 Vigna mungo HOM05D004801 ORTHO05D005747 1.1e-33 147.9 266 41.0
arahy.Tifrunner.gnm1.ann1.G6M6JD Arachis hypogaea HOM05D004801 ORTHO05D005747 1.9e-33 147.1 271 45.8
arahy.Tifrunner.gnm1.ann1.KJ31KE Arachis hypogaea HOM05D004801 ORTHO05D005747 1.9e-33 147.1 277 47.7
SGA_v2.0_scaffold34G13950 Striga asiatica HOM05D004801 ORTHO05D005747 1.9e-33 147.1 266 41.0
Ca_01496_v3 Cicer arietinum L. HOM05D004801 ORTHO05D005747 3.2e-33 146.4 263 43.7
Lsat_1_v5_gn_8_135921 Lactuca sativa HOM05D004801 ORTHO05D005747 3.2e-33 146.4 266 44.7
VMungo0464G1438 Vigna mungo HOM05D004801 ORTHO05D005747 4.2e-33 146.0 266 47.0
MSTRG.14326 Avicennia marina HOM05D004801 ORTHO05D005747 5.5e-33 145.6 235 40.9
Glyma.13G296700 Glycine max HOM05D004801 ORTHO05D005747 5.5e-33 145.6 267 41.9
Phvul.004G108200 Phaseolus vulgaris HOM05D004801 ORTHO05D005747 7.2e-33 145.2 245 42.0
SHI10398 Sapria himalayana HOM05D004801 ORTHO05D005747 7.2e-33 145.2 196 50.0
Gohir.A04G103500 Gossypium hirsutum HOM05D004801 ORTHO05D005747 1.2e-32 144.4 98 70.4
Peaxi162Scf00059g00194 Petunia axillaris HOM05D004801 ORTHO05D005747 3.6e-32 142.9 268 41.8
Eucgr.A01822 Eucalyptus grandis HOM05D004801 ORTHO05D005747 6.1e-32 142.1 282 45.0
GSVIVG01020552001 Vitis vinifera HOM05D004801 ORTHO05D005747 7.9e-32 141.7 86 73.3
Atru.chr6.2990 Acer truncatum HOM05D004801 ORTHO05D005747 1.0e-31 141.4 266 44.7
HanXRQChr17g0559281 Helianthus annuus HOM05D004801 ORTHO05D005747 1.0e-31 141.4 242 48.3
Nitab4.5_0011784g0010 Nicotiana tabacum HOM05D004801 ORTHO05D005747 1.4e-31 141.0 267 46.1
Cpa.g.sc34.170 Carica papaya HOM05D004801 ORTHO05D005747 2.3e-31 140.2 207 44.0
unitig_46.g18595 Utricularia gibba HOM05D004801 ORTHO05D005747 3.0e-31 139.8 209 41.1
Ciclev10016785m.g Citrus clementina HOM05D004801 ORTHO05D005747 6.7e-31 138.7 86 74.4
Lalb_Chr14g0366971 Lupinus albus HOM05D004801 ORTHO05D005747 1.5e-30 137.5 275 37.8
BraA08t33972Z Brassica rapa HOM05D004801 ORTHO05D005747 2.0e-30 137.1 205 41.0
Nitab4.5_0000585g0130 Nicotiana tabacum HOM05D004801 ORTHO05D005747 2.6e-30 136.7 265 44.5
FAN02G2956 Fragaria x ananassa HOM05D004801 ORTHO05D005747 7.4e-30 135.2 73 84.9
FAN09G3815 Fragaria x ananassa HOM05D004801 ORTHO05D005747 7.4e-30 135.2 73 84.9
Potri.013G130700 Populus trichocarpa HOM05D004801 ORTHO05D005747 1.3e-29 134.4 88 70.5
Aqoxy4G01981 Aquilegia oxysepala HOM05D004801 ORTHO05D005747 1.7e-29 134.0 82 70.7
FvH4_6g26250 Fragaria vesca HOM05D004801 ORTHO05D005747 1.7e-29 134.0 79 78.5
TPR.G6396 Trifolium pratense HOM05D004801 ORTHO05D005747 3.7e-29 132.9 274 38.7
Nitab4.5_0014741g0010 Nicotiana tabacum HOM05D004801 ORTHO05D005747 4.8e-29 132.5 266 41.7
Sabra13G0110300 Salix brachista HOM05D004801 ORTHO05D005747 4.8e-29 132.5 88 68.2
HPP92_008364 Vanilla planifolia HOM05D004801 ORTHO05D005747 4.8e-29 132.5 77 77.9
CAN.G578.5 Capsicum annuum HOM05D004801 ORTHO05D005747 8.2e-29 131.7 86 73.3
Nitab4.5_0000638g0250 Nicotiana tabacum HOM05D004801 ORTHO05D005747 8.2e-29 131.7 263 41.4
A08p20130 Brassica napus HOM05D004801 ORTHO05D005747 1.1e-28 131.3 181 44.8
MSTRG.12824 Avicennia marina HOM05D004801 ORTHO05D005747 1.4e-28 131.0 237 40.1
SalBow1G1046 Salvia bowleyana HOM05D004801 ORTHO05D005747 2.4e-28 130.2 82 74.4
SalBow1G6004 Salvia bowleyana HOM05D004801 ORTHO05D005747 9.1e-28 128.3 82 73.2
BcaB03g12566 Brassica carinata HOM05D004801 ORTHO05D005747 1.6e-27 127.5 260 39.2
BcaC07g38324 Brassica carinata HOM05D004801 ORTHO05D005747 1.6e-27 127.5 206 39.3
C08p10790 Brassica napus HOM05D004801 ORTHO05D005747 1.6e-27 127.5 206 39.3
Glyma.13G296800 Glycine max HOM05D004801 ORTHO05D005747 2.6e-27 126.7 78 75.6
PGR042G3918 Punica granatum HOM05D004801 ORTHO05D005747 3.5e-27 126.3 278 41.7
unitig_37.g12306 Utricularia gibba HOM05D004801 ORTHO05D005747 3.5e-27 126.3 209 39.2
Medtr2g090385 Medicago truncatula HOM05D004801 ORTHO05D005747 4.5e-27 125.9 264 45.5
Psat5g270840 Pisum sativum HOM05D004801 ORTHO05D005747 7.7e-27 125.2 231 43.7
BolC8t48753H Brassica oleracea HOM05D004801 ORTHO05D005747 8.5e-26 121.7 260 39.6
Sopen07g027930 Solanum pennellii HOM05D004801 ORTHO05D005747 8.5e-26 121.7 88 67.0
Thhalv10027270m.g Eutrema salsugineum HOM05D004801 ORTHO05D005747 1.1e-25 121.3 189 41.3
Peaxi162Scf00132g00008 Petunia axillaris HOM05D004801 ORTHO05D005747 1.1e-25 121.3 244 39.3
PGSC0003DMG400018341 Solanum tuberosum HOM05D004801 ORTHO05D005747 1.9e-25 120.6 88 67.0
PSO357G0555 Papaver somniferum HOM05D004801 ORTHO05D005747 7.2e-25 118.6 315 37.8
BcaC09g50492 Brassica carinata HOM05D004801 ORTHO05D005747 9.4e-25 118.2 89 64.0
CARHR236030 Cardamine hirsuta HOM05D004801 ORTHO05D005747 9.4e-25 118.2 187 40.1
AT4G28310 Arabidopsis thaliana HOM05D004801 ORTHO05D005747 2.1e-24 117.1 265 36.6
Solyc07g053950.1 Solanum lycopersicum HOM05D004801 ORTHO05D005747 2.1e-24 117.1 88 65.9
MBI18_g28947_MAGBIO Magnolia biondii HOM05D004801 ORTHO05D005747 2.7e-24 116.7 87 60.9
C01p24790 Brassica napus HOM05D004801 ORTHO05D005747 3.6e-24 116.3 211 38.4
BolC1t02426H Brassica oleracea HOM05D004801 ORTHO05D005747 3.6e-24 116.3 211 38.4
BraA01t01904Z Brassica rapa HOM05D004801 ORTHO05D005747 6.1e-24 115.5 73 71.2
Aa31LG10G480 Aethionema arabicum HOM05D004801 ORTHO05D005747 1.8e-23 114.0 208 38.0
Sp7g26270 Schrenkiella parvula HOM05D004801 ORTHO05D005747 1.8e-23 114.0 230 35.2
Psat5g272360 Pisum sativum HOM05D004801 ORTHO05D005747 2.3e-23 113.6 82 69.5
THA.LOC104824700 Tarenaya hassleriana HOM05D004801 ORTHO05D005747 2.3e-23 113.6 182 39.0
Lsat_1_v5_gn_8_135941 Lactuca sativa HOM05D004801 ORTHO05D005747 4.0e-23 112.8 256 38.7
Zm00001eb269130 Zea mays HOM05D004801 ORTHO05D005747 5.2e-23 112.5 105 59.0
BcaNung01577 Brassica carinata HOM05D004801 ORTHO05D005747 6.7e-23 112.1 208 34.1
AL7G24290 Arabidopsis lyrata HOM05D004801 ORTHO05D005747 8.8e-23 111.7 266 35.0
Aa31LG2G22170 Aethionema arabicum HOM05D004801 ORTHO05D005747 1.5e-22 110.9 261 33.7
Os06g0115700 Oryza sativa ssp. japonica HOM05D004801 ORTHO05D005747 3.3e-22 109.8 79 65.8
SEGI_29524 Sequoiadendron giganteum HOM05D004801 ORTHO05D005747 3.3e-22 109.8 217 35.9
PSO170G5688 Papaver somniferum HOM05D004801 ORTHO05D005747 2.8e-21 106.7 321 37.1
ATR0124G030 Amborella trichopoda HOM05D004801 ORTHO05D005747 3.7e-21 106.3 77 66.2
Carub.0007s1244 Capsella rubella HOM05D004801 ORTHO05D005747 6.3e-21 105.5 260 38.5
Mapoly0078s0017 Marchantia polymorpha HOM05D004801 ORTHO05D005747 1.4e-20 104.4 78 59.0
Lj1P721T18 Lonicera japonica HOM05D004801 ORTHO05D005747 7.0e-20 102.1 67 70.1
BcaC06g32627 Brassica carinata HOM05D004801 ORTHO05D005747 2.7e-19 100.1 187 37.4
BcaC06g32628 Brassica carinata HOM05D004801 ORTHO05D005747 2.7e-19 100.1 187 37.4
Pp3c17_13330 Physcomitrium patens HOM05D004801 ORTHO05D005747 2.7e-19 100.1 77 61.0
A03p58010 Brassica napus HOM05D004801 ORTHO05D005747 3.8e-18 96.3 209 34.4
BraA03t14864Z Brassica rapa HOM05D004801 ORTHO05D005747 3.8e-18 96.3 209 34.4
Pp3c14_12710 Physcomitrium patens HOM05D004801 ORTHO05D005747 3.8e-18 96.3 77 57.1
C07p56130 Brassica napus HOM05D004801 ORTHO05D005747 1.9e-17 94.0 209 33.5
BolC7t46088H Brassica oleracea HOM05D004801 ORTHO05D005747 5.5e-17 92.4 206 33.0
AagrBONN_evm.TU.Sc2ySwM_344.3370 Anthoceros agrestis HOM05D004801 ORTHO05D005747 3.6e-16 89.7 78 56.4
CSS0039100 Camellia sinensis var. sinensis HOM05D000022 ORTHO05D004590 2.3e-15 87.0 86 60.5
SalBow7G4382 Salvia bowleyana HOM05D004801 ORTHO05D005747 7.5e-14 82.0 223 34.5
BcaNung01357 Brassica carinata HOM05D004801 ORTHO05D005747 8.0e-08 62.0 206 29.6
SalBow1G0370 Salvia bowleyana HOM05D004801 ORTHO05D005747 1.5e-06 57.8 182 28.0
SalBow7G4186 Salvia bowleyana HOM05D000074 ORTHO05D000220 9.8e-06 55.1 32 75.0


User provided reference genes

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