Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0019582 Camellia sinensis var. sinensis HOM05D003210 ORTHO05D000001 2.5e-122 444.1 888 100.0
CSS0039883 Camellia sinensis var. sinensis HOM05D003210 ORTHO05D000001 9.8e-119 432.2 888 99.2
Hma1.2p1_0133F.1_g061410 Hydrangea macrophylla HOM05D003210 ORTHO05D000001 1.7e-54 218.8 135 77.8
Hma1.2p1_1825F.1_g304380 Hydrangea macrophylla HOM05D003210 ORTHO05D000001 4.9e-54 217.2 135 77.0
TAR629G0622 Trochodendron aralioides HOM05D003210 ORTHO05D000001 2.5e-53 214.9 135 77.0
Rhsim06G0174500 Rhododendron simsii HOM05D003210 ORTHO05D000001 5.5e-53 213.8 859 86.3
GSVIVG01030055001 Vitis vinifera HOM05D003210 ORTHO05D000001 5.5e-53 213.8 134 76.9
vmacro12101 Vaccinium macrocarpon HOM05D003210 ORTHO05D000001 2.1e-52 211.8 136 77.2
Dinv24763 Davidia involucrata HOM05D003210 ORTHO05D000001 3.5e-52 211.1 228 75.4
TWI18G1117 Tripterygium wilfordii HOM05D003210 ORTHO05D000001 1.8e-51 208.8 135 71.1
Atru.chr6.3361 Acer truncatum HOM05D003210 ORTHO05D000001 1.6e-49 202.2 852 88.0
Nn1g03235 Nelumbo nucifera HOM05D003210 ORTHO05D000001 1.4e-48 199.1 135 71.1
ClCG02G002730 Citrullus lanatus HOM05D003210 ORTHO05D000001 9.0e-48 196.4 135 70.4
MD09G1122300 Malus domestica HOM05D003210 ORTHO05D000001 4.5e-47 194.1 135 68.1
THA.LOC104819041 Tarenaya hassleriana HOM05D003210 ORTHO05D000001 4.5e-47 194.1 135 68.9
QL04p021900 Quercus lobata HOM05D003210 ORTHO05D000001 1.0e-46 193.0 221 71.9
MSTRG.6643 Avicennia marina HOM05D003210 ORTHO05D000001 6.5e-46 190.3 130 70.0
Manes.12G061200 Manihot esculenta HOM05D003210 ORTHO05D000001 1.9e-45 188.7 137 64.2
Prupe.3G201200 Prunus persica HOM05D003210 ORTHO05D000001 3.2e-45 188.0 135 67.4
MELO3C024111.2 Cucumis melo HOM05D003210 ORTHO05D000001 4.2e-45 187.6 135 65.9
Oeu040467.2 Olea europaea HOM05D003210 ORTHO05D000001 4.2e-45 187.6 137 67.9
Eucgr.K00651 Eucalyptus grandis HOM05D003210 ORTHO05D000001 2.7e-44 184.9 135 64.4
SalBow7G0399 Salvia bowleyana HOM05D003210 ORTHO05D000001 4.6e-44 184.1 130 69.2
Thecc.01G191200 Theobroma cacao HOM05D003210 ORTHO05D000001 4.6e-44 184.1 133 66.2
CiPaw.12G072400 Carya illinoinensis HOM05D003210 ORTHO05D000001 6.1e-44 183.7 219 68.5
Ciclev10014182m.g Citrus clementina HOM05D003210 ORTHO05D000001 6.1e-44 183.7 216 64.8
CsaV3_7G023730 Cucumis sativus L. HOM05D003210 ORTHO05D000001 3.0e-43 181.4 135 64.4
Sed0013166 Sechium edule HOM05D003210 ORTHO05D000001 6.7e-43 180.3 135 65.2
CsaV3_7G021590 Cucumis sativus L. HOM05D003210 ORTHO05D000001 1.1e-42 179.5 136 64.0
SGA_v2.0_scaffold181G39678 Striga asiatica HOM05D003210 ORTHO05D000001 7.4e-42 176.8 125 66.4
CAN.G1397.6 Capsicum annuum HOM05D003210 ORTHO05D000001 1.3e-41 176.0 130 64.6
Cfa012658 Carpinus fangiana HOM05D003210 ORTHO05D000001 1.3e-41 176.0 132 62.9
Solyc07g047820.3 Solanum lycopersicum HOM05D003210 ORTHO05D000001 1.1e-40 172.9 149 58.4
Sopen07g024250 Solanum pennellii HOM05D003210 ORTHO05D000001 1.1e-40 172.9 148 58.8
Nitab4.5_0011940g0010 Nicotiana tabacum HOM05D003210 ORTHO05D000001 3.1e-40 171.4 155 56.8
RcHm_v2.0_Chr2g0156641 Rosa chinensis HOM05D003210 ORTHO05D000001 3.1e-40 171.4 135 60.0
Haze_07989 Corylus avellana HOM05D003210 ORTHO05D000001 1.2e-39 169.5 125 62.4
Peaxi162Scf00776g00227 Petunia axillaris HOM05D003210 ORTHO05D000001 1.2e-39 169.5 154 57.1
FAN14G2019 Fragaria x ananassa HOM05D003210 ORTHO05D000001 3.4e-39 167.9 135 57.0
Sc06g0009870 Simmondsia chinensis HOM05D003210 ORTHO05D000001 1.0e-38 166.4 134 59.7
PGR142G4479 Punica granatum HOM05D003210 ORTHO05D000001 1.3e-38 166.0 221 67.4
FvH4_6g41080 Fragaria vesca HOM05D003210 ORTHO05D000001 1.7e-38 165.6 133 57.1
PSO541G3269 Papaver somniferum HOM05D003210 ORTHO05D000001 2.9e-38 164.9 136 61.8
unitig_748.g8367 Utricularia gibba HOM05D003210 ORTHO05D000001 1.1e-37 162.9 133 56.4
PSO675G6229 Papaver somniferum HOM05D003210 ORTHO05D000001 1.9e-37 162.2 136 61.0
Nitab4.5_0000441g0020 Nicotiana tabacum HOM05D003210 ORTHO05D000001 2.7e-36 158.3 206 70.9
MBI19_g25583_MAGBIO Magnolia biondii HOM05D003210 ORTHO05D000001 7.9e-36 156.8 219 65.8
AUR62015034 Chenopodium quinoa HOM05D003210 ORTHO05D000001 3.9e-35 154.5 136 58.1
FAN05G1838 Fragaria x ananassa HOM05D003210 ORTHO05D000001 3.9e-35 154.5 119 58.0
FAN02G2842 Fragaria x ananassa HOM05D003210 ORTHO05D000001 5.1e-35 154.1 119 58.8
PGSC0003DMG400006128 Solanum tuberosum HOM05D003210 ORTHO05D000001 2.6e-34 151.8 206 68.0
Cc04_g11530 Coffea canephora HOM05D003210 ORTHO05D000001 3.3e-34 151.4 207 69.1
HanXRQChr03g0075201 Helianthus annuus HOM05D003210 ORTHO05D000001 5.7e-34 150.6 135 48.9
FAN09G1124 Fragaria x ananassa HOM05D003210 ORTHO05D000001 9.7e-34 149.8 119 57.1
MELO3C013188.2 Cucumis melo HOM05D003210 ORTHO05D000001 1.7e-33 149.1 218 58.3
AUR62017491 Chenopodium quinoa HOM05D003210 ORTHO05D000001 4.8e-33 147.5 135 57.0
Dinv33235 Davidia involucrata HOM05D003210 ORTHO05D000001 4.1e-32 144.4 214 67.3
Dinv24770 Davidia involucrata HOM05D003210 ORTHO05D000001 5.3e-32 144.1 207 57.5
SHI10143 Sapria himalayana HOM05D003210 ORTHO05D000001 5.3e-32 144.1 137 51.8
ATR0712G112 Amborella trichopoda HOM05D003210 ORTHO05D000001 1.5e-31 142.5 134 50.0
DCAR_012908 Daucus carota HOM05D003210 ORTHO05D000001 1.4e-29 136.0 214 61.2
DCAR_012925 Daucus carota HOM05D003210 ORTHO05D000001 1.4e-29 136.0 214 61.2
Migut.M00034 Erythranthe guttata HOM05D003210 ORTHO05D000001 1.9e-29 135.6 212 58.5
Ah.15g091280 Amaranthus hybridus HOM05D003210 ORTHO05D000001 2.1e-28 132.1 109 56.9
HPP92_009567 Vanilla planifolia HOM05D003210 ORTHO05D000001 2.3e-27 128.6 134 47.0
Hma1.2p1_0133F.1_g061420 Hydrangea macrophylla HOM05D003210 ORTHO05D000001 3.9e-27 127.9 83 75.9
COL.COLO4_08492 Corchorus olitorius HOM05D003210 ORTHO05D000001 3.7e-25 121.3 90 65.6
HanXRQChr13g0389381 Helianthus annuus HOM05D003210 ORTHO05D000001 4.8e-25 120.9 221 59.3
TAR625G1193 Trochodendron aralioides HOM05D003210 ORTHO05D000001 4.7e-20 104.4 138 37.7
ATR0665G178 Amborella trichopoda HOM05D003210 ORTHO05D000001 1.0e-19 103.2 130 40.0
GSVIVG01038280001 Vitis vinifera HOM05D003210 ORTHO05D000001 1.2e-18 99.8 134 36.6
SEGI_31076 Sequoiadendron giganteum HOM05D003210 ORTHO05D000001 2.0e-18 99.0 137 38.0
SEGI_11288 Sequoiadendron giganteum HOM05D003210 ORTHO05D000001 3.4e-18 98.2 144 35.4
Ciclev10018770m.g Citrus clementina HOM05D003210 ORTHO05D000001 1.3e-17 96.3 139 33.8
Sc16g0000610 Simmondsia chinensis HOM05D003210 ORTHO05D000001 2.2e-17 95.5 140 37.9
TAR381G0732 Trochodendron aralioides HOM05D003210 ORTHO05D000001 2.8e-17 95.1 138 36.2
Eucgr.H02438 Eucalyptus grandis HOM05D003210 ORTHO05D000001 3.7e-17 94.7 138 34.8
Lsat_1_v5_gn_9_104601 Lactuca sativa HOM05D003210 ORTHO05D000001 6.3e-17 94.0 75 57.3
Haze_03893 Corylus avellana HOM05D003210 ORTHO05D000001 4.1e-16 91.3 135 36.3
Gorai.008G093300 Gossypium raimondii HOM05D003210 ORTHO05D000001 9.1e-16 90.1 138 35.5
Gohir.D12G079600 Gossypium hirsutum HOM05D003210 ORTHO05D000001 1.6e-15 89.4 138 34.8
CiPaw.08G142200 Carya illinoinensis HOM05D003210 ORTHO05D000001 2.0e-15 89.0 136 36.8
Thecc.01G088700 Theobroma cacao HOM05D003210 ORTHO05D000001 2.0e-15 89.0 142 32.4
CANSAT01G1059 Cannabis sativa HOM05D003210 ORTHO05D000001 3.5e-15 88.2 134 34.3
Gohir.A12G085200 Gossypium hirsutum HOM05D003210 ORTHO05D000001 3.5e-15 88.2 138 34.8
CDE02G4398 Ceratophyllum demersum HOM05D003210 ORTHO05D000001 5.9e-15 87.4 134 30.6
Hund03005 Selenicereus undatus HOM05D003210 ORTHO05D000001 5.9e-15 87.4 139 36.0
MBI16_g31256_MAGBIO Magnolia biondii HOM05D003210 ORTHO05D000001 1.7e-14 85.9 140 30.0
SGA_v2.0_scaffold181G39736 Striga asiatica HOM05D003210 ORTHO05D000001 1.7e-14 85.9 138 34.8
CDE02G0711 Ceratophyllum demersum HOM05D003210 ORTHO05D000001 6.5e-14 84.0 203 56.7
Atru.chr4.1465 Acer truncatum HOM05D003210 ORTHO05D000001 8.5e-14 83.6 133 30.8
COL.COLO4_27373 Corchorus olitorius HOM05D003210 ORTHO05D000001 8.5e-14 83.6 139 30.2
Aqoxy6G00832 Aquilegia oxysepala HOM05D003210 ORTHO05D000001 1.5e-13 82.8 144 31.9
QL12p037893 Quercus lobata HOM05D003210 ORTHO05D000001 1.5e-13 82.8 141 34.0
Duzib264G1117 Durio zibethinus HOM05D003210 ORTHO05D000001 2.5e-13 82.0 138 31.9
MD08G1245900 Malus domestica HOM05D003210 ORTHO05D000001 2.5e-13 82.0 144 30.6
THA.LOC104808438 Tarenaya hassleriana HOM05D003210 ORTHO05D000001 2.5e-13 82.0 140 30.7
MD15G1441200 Malus domestica HOM05D003210 ORTHO05D000001 3.2e-13 81.6 138 31.2
AUR62039467 Chenopodium quinoa HOM05D003210 ORTHO05D000001 4.2e-13 81.3 207 27.1
Sed0026111 Sechium edule HOM05D003210 ORTHO05D000001 4.2e-13 81.3 135 31.9
TWI53G0425 Tripterygium wilfordii HOM05D003210 ORTHO05D000001 5.5e-13 80.9 136 33.1
ClCG08G009320 Citrullus lanatus HOM05D003210 ORTHO05D000001 7.2e-13 80.5 135 31.9
Manes.12G124600 Manihot esculenta HOM05D003210 ORTHO05D000001 7.2e-13 80.5 137 29.2
PGR102G2337 Punica granatum HOM05D003210 ORTHO05D000001 9.4e-13 80.1 138 29.7
MELO3C026530.2 Cucumis melo HOM05D003210 ORTHO05D000001 1.2e-12 79.7 135 31.9
VMungo1383G3073 Vigna mungo HOM05D003210 ORTHO05D000001 1.2e-12 79.7 136 32.4
MD03G1170600 Malus domestica HOM05D003210 ORTHO05D000001 2.1e-12 79.0 137 33.6
Oeu017113.2 Olea europaea HOM05D000258 ORTHO05D000001 3.6e-12 78.2 137 31.4
CAN.G674.2 Capsicum annuum HOM05D003210 ORTHO05D000001 4.7e-12 77.8 178 38.2
AUR62027713 Chenopodium quinoa HOM05D003210 ORTHO05D000001 4.7e-12 77.8 206 28.2
Migut.H02282 Erythranthe guttata HOM05D003210 ORTHO05D000001 6.1e-12 77.4 138 30.4
Prupe.1G583300 Prunus persica HOM05D003210 ORTHO05D000001 6.1e-12 77.4 138 29.0
TWI74G0121 Tripterygium wilfordii HOM05D003210 ORTHO05D000001 8.0e-12 77.0 136 32.4
ATR0661G545 Amborella trichopoda HOM05D008810 ORTHO05D010971 1.0e-11 76.6 134 31.3
CsaV3_6G031450 Cucumis sativus L. HOM05D003210 ORTHO05D000001 1.0e-11 76.6 135 31.1
Phvul.008G101600 Phaseolus vulgaris HOM05D003210 ORTHO05D000001 1.0e-11 76.6 207 36.7
FAN03G0748 Fragaria x ananassa HOM05D003210 ORTHO05D000001 1.4e-11 76.3 170 26.5
Potri.006G124900 Populus trichocarpa HOM05D003210 ORTHO05D000001 1.8e-11 75.9 142 32.4
RcHm_v2.0_Chr1g0329241 Rosa chinensis HOM05D003210 ORTHO05D000001 2.3e-11 75.5 170 26.5
TPR.G36733 Trifolium pratense HOM05D003210 ORTHO05D000001 2.3e-11 75.5 136 30.1
Aqoxy4G02220 Aquilegia oxysepala HOM05D003210 ORTHO05D000001 3.0e-11 75.1 219 53.9
ECA240G1833 Erigeron canadensis HOM05D003210 ORTHO05D000001 5.2e-11 74.3 203 55.2
FAN26G1074 Fragaria x ananassa HOM05D003210 ORTHO05D000001 5.2e-11 74.3 170 25.3
FvH4_7g04271 Fragaria vesca HOM05D003210 ORTHO05D000001 6.8e-11 73.9 170 25.9
TWI75G1111 Tripterygium wilfordii HOM05D008810 ORTHO05D010971 8.8e-11 73.6 134 32.8
EL10Ac6g15188 Beta vulgaris HOM05D003210 ORTHO05D000001 1.2e-10 73.2 138 31.2
FAN28G0230 Fragaria x ananassa HOM05D003210 ORTHO05D000001 1.2e-10 73.2 170 25.3
PSO541G2059 Papaver somniferum HOM05D003210 ORTHO05D000001 1.2e-10 73.2 141 33.3
Nitab4.5_0000574g0030 Nicotiana tabacum HOM05D003210 ORTHO05D000001 2.6e-10 72.0 178 44.4
Ah.03g139830 Amaranthus hybridus HOM05D003210 ORTHO05D000001 3.4e-10 71.6 131 32.1
SHI21874 Sapria himalayana HOM05D003210 ORTHO05D000001 3.4e-10 71.6 141 30.5
PGSC0003DMG401028232 Solanum tuberosum HOM05D003210 ORTHO05D000001 3.4e-10 71.6 137 30.7
Lalb_Chr19g0125341 Lupinus albus HOM05D003210 ORTHO05D000001 4.4e-10 71.2 137 32.1
AL8G43160 Arabidopsis lyrata HOM05D003210 ORTHO05D000001 5.7e-10 70.9 136 27.9
BcaC01g02798 Brassica carinata HOM05D003210 ORTHO05D000001 7.5e-10 70.5 133 28.6
C03p60210 Brassica napus HOM05D003210 ORTHO05D000001 7.5e-10 70.5 133 28.6
BolC3t18283H Brassica oleracea HOM05D003210 ORTHO05D000001 7.5e-10 70.5 133 28.6
Carub.0008s2641 Capsella rubella HOM05D003210 ORTHO05D000001 7.5e-10 70.5 140 26.4
Lsat_1_v5_gn_7_6901 Lactuca sativa HOM05D003210 ORTHO05D000001 7.5e-10 70.5 144 27.1
Nitab4.5_0002364g0030 Nicotiana tabacum HOM05D003210 ORTHO05D000001 9.8e-10 70.1 178 43.3
Glyma.09G200200 Glycine max HOM05D003210 ORTHO05D000001 1.3e-09 69.7 146 30.8
RcHm_v2.0_Chr2g0092171 Rosa chinensis HOM05D003210 ORTHO05D000001 1.3e-09 69.7 133 31.6
FvH4_1g06430 Fragaria vesca HOM05D003210 ORTHO05D000001 1.7e-09 69.3 170 24.7
FAN19G0968 Fragaria x ananassa HOM05D003210 ORTHO05D000001 1.7e-09 69.3 170 24.7
AT5G65560 Arabidopsis thaliana HOM05D003210 ORTHO05D000001 2.2e-09 68.9 140 27.1
Solyc10g081880.3 Solanum lycopersicum HOM05D003210 ORTHO05D000001 2.2e-09 68.9 137 29.9
Sopen10g032390 Solanum pennellii HOM05D003210 ORTHO05D000001 2.2e-09 68.9 137 29.9
Nn1g08193 Nelumbo nucifera HOM05D008810 ORTHO05D010971 4.8e-09 67.8 137 33.6
AL3G14030 Arabidopsis lyrata HOM05D003210 ORTHO05D000001 6.3e-09 67.4 126 28.6
Rhsim13G0050100 Rhododendron simsii HOM05D008810 ORTHO05D010971 6.3e-09 67.4 135 32.6
BraA06t26165Z Brassica rapa HOM05D003210 ORTHO05D000001 8.3e-09 67.0 130 27.7
Psat3g169880 Pisum sativum HOM05D003210 ORTHO05D000001 1.1e-08 66.6 140 27.9
Ca_25227_v3 Cicer arietinum L. HOM05D003210 ORTHO05D000001 1.4e-08 66.2 129 30.2
Lj3C22T6 Lonicera japonica HOM05D003210 ORTHO05D000001 1.4e-08 66.2 137 27.7
A06p32400 Brassica napus HOM05D003210 ORTHO05D000001 1.8e-08 65.9 130 27.7
Sp2g28660 Schrenkiella parvula HOM05D003210 ORTHO05D000001 2.4e-08 65.5 140 24.3
VMungo1215G2034 Vigna mungo HOM05D003210 ORTHO05D000001 2.4e-08 65.5 137 29.2
FvH4_2g11090 Fragaria vesca HOM05D003210 ORTHO05D000001 3.1e-08 65.1 140 29.3
Medtr5g031740 Medicago truncatula HOM05D003210 ORTHO05D000001 3.1e-08 65.1 136 27.9
vmacro02795 Vaccinium macrocarpon HOM05D008810 ORTHO05D010971 3.1e-08 65.1 134 32.1
PGSC0003DMG400023572 Solanum tuberosum HOM05D003210 ORTHO05D000001 5.4e-08 64.3 135 28.1
Carub.0002s2422 Capsella rubella HOM05D003210 ORTHO05D000001 7.0e-08 63.9 136 26.5
CARHR279540 Cardamine hirsuta HOM05D003210 ORTHO05D000001 7.0e-08 63.9 145 24.8
FAN24G1052 Fragaria x ananassa HOM05D003210 ORTHO05D000001 7.0e-08 63.9 174 23.6
Lj2g0010731 Lotus japonicus HOM05D003210 ORTHO05D000001 7.0e-08 63.9 133 28.6
Cc03_g12590 Coffea canephora HOM05D003210 ORTHO05D000001 1.2e-07 63.2 166 48.2
HanXRQChr06g0169331 Helianthus annuus HOM05D003210 ORTHO05D000001 1.2e-07 63.2 142 27.5
Lj1P792T34 Lonicera japonica HOM05D003210 ORTHO05D000001 1.2e-07 63.2 39 71.8
Cpa.g.sc10.84 Carica papaya HOM05D003210 ORTHO05D000001 1.6e-07 62.8 174 33.3
HanXRQChr04g0122161 Helianthus annuus HOM05D003210 ORTHO05D000001 1.6e-07 62.8 143 25.9
CSS0000965 Camellia sinensis var. sinensis HOM05D003210 ORTHO05D000001 2.0e-07 62.4 174 41.4
HanXRQChr13g0389361 Helianthus annuus HOM05D000003 ORTHO05D000007 2.7e-07 62.0 57 52.6
Lalb_Chr09g0325941 Lupinus albus HOM05D003210 ORTHO05D000001 3.5e-07 61.6 140 29.3
FAN20G1808 Fragaria x ananassa HOM05D003210 ORTHO05D000001 4.5e-07 61.2 174 24.1
Prupe.4G256300 Prunus persica HOM05D003210 ORTHO05D000001 5.9e-07 60.8 165 26.1
AT1G77340 Arabidopsis thaliana HOM05D003210 ORTHO05D000001 1.0e-06 60.1 131 26.0
Zm00001eb118600 Zea mays HOM05D003210 ORTHO05D000001 1.3e-06 59.7 141 27.7
AagrBONN_evm.TU.Sc2ySwM_344.1991 Anthoceros agrestis HOM05D004079 ORTHO05D008352 2.3e-06 58.9 133 29.3
MBI11_g07406_MAGBIO Magnolia biondii HOM05D008810 ORTHO05D010971 2.3e-06 58.9 137 30.7
Peaxi162Scf00370g00062 Petunia axillaris HOM05D003210 ORTHO05D000001 2.3e-06 58.9 180 35.0
HanXRQChr08g0232341 Helianthus annuus HOM05D008810 ORTHO05D010971 3.8e-06 58.2 135 28.1
Lj2P1121T65 Lonicera japonica HOM05D008810 ORTHO05D010971 3.8e-06 58.2 134 26.9
FAN23G1801 Fragaria x ananassa HOM05D003210 ORTHO05D000001 5.0e-06 57.8 133 28.6
MD10G1157300 Malus domestica HOM05D008810 ORTHO05D010971 5.0e-06 57.8 135 31.1
Os02g0582300 Oryza sativa ssp. japonica HOM05D003210 ORTHO05D000001 6.6e-06 57.4 153 24.2


User provided reference genes

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