Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0019555 Camellia sinensis var. sinensis HOM05D006150 ORTHO05D007745 2.6e-180 635.2 309 100.0
Rhsim07G0136400 Rhododendron simsii HOM05D006150 ORTHO05D007745 4.0e-152 541.6 305 85.2
TAR636G1440 Trochodendron aralioides HOM05D006150 ORTHO05D007745 2.4e-149 532.3 309 82.2
Duzib084G0008 Durio zibethinus HOM05D006150 ORTHO05D007745 1.6e-145 519.6 309 80.3
Thecc.03G240100 Theobroma cacao HOM05D006150 ORTHO05D007745 8.0e-145 517.3 309 79.0
Gohir.A12G212700 Gossypium hirsutum HOM05D006150 ORTHO05D007745 1.4e-144 516.5 303 80.2
Hma1.2p1_0570F.1_g180430 Hydrangea macrophylla HOM05D006150 ORTHO05D007745 1.8e-144 516.2 289 82.4
Gorai.008G230800 Gossypium raimondii HOM05D006150 ORTHO05D007745 3.1e-144 515.4 301 80.7
Sopen08g026350 Solanum pennellii HOM05D006150 ORTHO05D007745 4.0e-144 515.0 305 80.0
Solyc08g077840.3 Solanum lycopersicum HOM05D006150 ORTHO05D007745 1.2e-143 513.5 305 79.7
Gohir.D12G215200 Gossypium hirsutum HOM05D006150 ORTHO05D007745 2.6e-143 512.3 301 80.1
COL.COLO4_07285 Corchorus olitorius HOM05D006150 ORTHO05D007745 4.4e-143 511.5 309 79.6
Lj8A277T42 Lonicera japonica HOM05D006150 ORTHO05D007745 4.4e-143 511.5 286 82.9
Ciclev10021365m.g Citrus clementina HOM05D006150 ORTHO05D007745 1.3e-142 510.0 300 80.0
CAN.G572.11 Capsicum annuum HOM05D006150 ORTHO05D007745 3.7e-142 508.4 291 82.1
PGSC0003DMG400026243 Solanum tuberosum HOM05D006150 ORTHO05D007745 6.4e-142 507.7 305 79.0
Cfa012327 Carpinus fangiana HOM05D006150 ORTHO05D007745 2.4e-141 505.8 294 79.9
CANSAT21G0710 Cannabis sativa HOM05D006150 ORTHO05D007745 9.2e-141 503.8 296 80.7
MBI04_g13858_MAGBIO Magnolia biondii HOM05D006150 ORTHO05D007745 4.6e-140 501.5 302 77.2
HanXRQChr17g0534011 Helianthus annuus HOM05D006150 ORTHO05D007745 2.3e-139 499.2 305 78.0
Cc08_g11330 Coffea canephora HOM05D006150 ORTHO05D007745 8.6e-139 497.3 305 76.7
PSO675G6476 Papaver somniferum HOM05D006150 ORTHO05D007745 1.1e-138 496.9 296 80.4
Manes.01G089000 Manihot esculenta HOM05D006150 ORTHO05D007745 1.9e-138 496.1 305 78.0
MD04G1055500 Malus domestica HOM05D006150 ORTHO05D007745 3.3e-138 495.4 296 80.1
Nn6g33757 Nelumbo nucifera HOM05D006150 ORTHO05D007745 4.3e-138 495.0 286 81.5
CiPaw.11G072300 Carya illinoinensis HOM05D006150 ORTHO05D007745 5.6e-138 494.6 294 77.2
TWI60G0542 Tripterygium wilfordii HOM05D006150 ORTHO05D007745 5.6e-138 494.6 295 78.0
RcHm_v2.0_Chr7g0205681 Rosa chinensis HOM05D006150 ORTHO05D007745 2.8e-137 492.3 301 77.1
Potri.003G083600 Populus trichocarpa HOM05D006150 ORTHO05D007745 3.6e-137 491.9 298 79.2
MSTRG.6640 Avicennia marina HOM05D006150 ORTHO05D007745 6.2e-137 491.1 305 74.8
PSO732G0290 Papaver somniferum HOM05D006150 ORTHO05D007745 6.2e-137 491.1 290 80.0
FvH4_5g20400 Fragaria vesca HOM05D006150 ORTHO05D007745 1.4e-136 490.0 290 78.3
FAN04G1813 Fragaria x ananassa HOM05D006150 ORTHO05D007745 3.1e-136 488.8 294 77.2
Atru.chr9.1206 Acer truncatum HOM05D006150 ORTHO05D007745 5.2e-136 488.0 298 76.8
CARHR223610 Cardamine hirsuta HOM05D006150 ORTHO05D007745 5.2e-136 488.0 294 77.6
Haze_08363 Corylus avellana HOM05D006150 ORTHO05D007745 6.8e-136 487.6 319 72.7
DCAR_008330 Daucus carota HOM05D006150 ORTHO05D007745 6.8e-136 487.6 298 76.8
EL10Ac5g12270 Beta vulgaris HOM05D006150 ORTHO05D007745 1.5e-135 486.5 295 76.6
AT4G17050 Arabidopsis thaliana HOM05D006150 ORTHO05D007745 3.4e-135 485.3 294 76.9
FAN08G0760 Fragaria x ananassa HOM05D006150 ORTHO05D007745 5.8e-135 484.6 289 77.5
ECA234G2169 Erigeron canadensis HOM05D006150 ORTHO05D007745 9.9e-135 483.8 300 76.7
BraA03t14117Z Brassica rapa HOM05D006150 ORTHO05D007745 2.2e-134 482.6 302 75.8
Eucgr.D02133 Eucalyptus grandis HOM05D006150 ORTHO05D007745 2.2e-134 482.6 311 75.9
BcaNung04656 Brassica carinata HOM05D006150 ORTHO05D007745 4.9e-134 481.5 295 76.9
C07p48520 Brassica napus HOM05D006150 ORTHO05D007745 1.1e-133 480.3 296 77.0
BolC7t45360H Brassica oleracea HOM05D006150 ORTHO05D007745 1.1e-133 480.3 296 77.0
Lalb_Chr09g0329771 Lupinus albus HOM05D006150 ORTHO05D007745 1.9e-133 479.6 305 74.1
ClCG10G005070 Citrullus lanatus HOM05D006150 ORTHO05D007745 2.4e-133 479.2 295 75.9
THA.LOC104807929 Tarenaya hassleriana HOM05D006150 ORTHO05D007745 3.2e-133 478.8 290 76.2
AL7G37660 Arabidopsis lyrata HOM05D006150 ORTHO05D007745 4.1e-133 478.4 291 76.6
Carub.0007s2437 Capsella rubella HOM05D006150 ORTHO05D007745 4.1e-133 478.4 296 75.7
arahy.Tifrunner.gnm1.ann1.IPM3U6 Arachis hypogaea HOM05D006150 ORTHO05D007745 5.4e-133 478.0 294 75.2
CsaV3_3G004750 Cucumis sativus L. HOM05D006150 ORTHO05D007745 9.2e-133 477.2 295 76.3
A03p50280 Brassica napus HOM05D006150 ORTHO05D007745 1.6e-132 476.5 302 75.5
Sed0022790 Sechium edule HOM05D006150 ORTHO05D007745 1.6e-132 476.5 295 76.9
C07p48460 Brassica napus HOM05D006150 ORTHO05D007745 2.1e-132 476.1 301 76.7
Nitab4.5_0000500g0240 Nicotiana tabacum HOM05D006150 ORTHO05D007745 2.7e-132 475.7 308 75.6
SalBow7G3619 Salvia bowleyana HOM05D006150 ORTHO05D007745 2.7e-132 475.7 286 76.6
Glyma.05G066500 Glycine max HOM05D006150 ORTHO05D007745 6.0e-132 474.6 294 74.5
Sp7g17140 Schrenkiella parvula HOM05D006150 ORTHO05D007745 6.0e-132 474.6 296 75.7
PSO732G0039 Papaver somniferum HOM05D006150 ORTHO05D007745 1.0e-131 473.8 274 80.3
Lj4g0002003 Lotus japonicus HOM05D006150 ORTHO05D007745 1.3e-131 473.4 296 74.7
Ah.12g053980 Amaranthus hybridus HOM05D006150 ORTHO05D007745 2.3e-131 472.6 292 74.7
arahy.Tifrunner.gnm1.ann1.YY6LCE Arachis hypogaea HOM05D006150 ORTHO05D007745 3.0e-131 472.2 294 75.2
BraA01t01953Z Brassica rapa HOM05D006150 ORTHO05D007745 3.0e-131 472.2 297 75.1
BcaC06g33538 Brassica carinata HOM05D006150 ORTHO05D007745 3.9e-131 471.9 303 74.9
Glyma.17G148400 Glycine max HOM05D006150 ORTHO05D007745 3.9e-131 471.9 298 72.5
PGR031G0533 Punica granatum HOM05D006150 ORTHO05D007745 1.1e-130 470.3 260 82.7
BolC1t02493H Brassica oleracea HOM05D006150 ORTHO05D007745 1.9e-130 469.5 296 75.0
QL12p008732 Quercus lobata HOM05D006150 ORTHO05D007745 2.5e-130 469.2 401 60.3
C07p48390 Brassica napus HOM05D006150 ORTHO05D007745 5.6e-130 468.0 295 76.3
Phvul.003G225600 Phaseolus vulgaris HOM05D006150 ORTHO05D007745 4.7e-129 464.9 297 71.4
TPR.G25747 Trifolium pratense HOM05D006150 ORTHO05D007745 6.2e-129 464.5 299 72.2
CDE12G0966 Ceratophyllum demersum HOM05D006150 ORTHO05D007745 1.1e-128 463.8 294 74.1
Actinidia02195 Actinidia chinensis HOM05D006150 ORTHO05D007745 4.0e-128 461.8 265 83.4
BcaNung00130 Brassica carinata HOM05D006150 ORTHO05D007745 4.0e-128 461.8 296 73.6
Nitab4.5_0009451g0030 Nicotiana tabacum HOM05D006150 ORTHO05D007745 4.0e-128 461.8 310 72.6
Os07g0495000 Oryza sativa ssp. japonica HOM05D006150 ORTHO05D007745 4.0e-128 461.8 280 76.1
VMungo0251G1767 Vigna mungo HOM05D006150 ORTHO05D007745 4.0e-128 461.8 298 70.1
ATR0665G013 Amborella trichopoda HOM05D006150 ORTHO05D007745 6.8e-128 461.1 306 73.5
Ca_22017_v3 Cicer arietinum L. HOM05D006150 ORTHO05D007745 6.8e-128 461.1 296 72.3
unitig_746.g26644 Utricularia gibba HOM05D006150 ORTHO05D007745 1.2e-127 460.3 295 73.9
Aqoxy5G02622 Aquilegia oxysepala HOM05D006150 ORTHO05D007745 2.2e-126 456.1 309 70.6
Medtr4g099290 Medicago truncatula HOM05D006150 ORTHO05D007745 2.2e-126 456.1 297 71.7
Zm00001eb322060 Zea mays HOM05D006150 ORTHO05D007745 1.9e-125 453.0 283 74.9
A01p20260 Brassica napus HOM05D006150 ORTHO05D007745 1.1e-122 443.7 285 74.4
HPP92_025744 Vanilla planifolia HOM05D006150 ORTHO05D007745 1.3e-121 440.3 303 69.6
Peaxi162Scf00301g00519 Petunia axillaris HOM05D006150 ORTHO05D007745 1.8e-120 436.4 287 72.5
vmacro00832 Vaccinium macrocarpon HOM05D006150 ORTHO05D007745 2.6e-119 432.6 296 72.6
Thhalv10026866m.g Eutrema salsugineum HOM05D006150 ORTHO05D007745 9.9e-119 430.6 303 70.6
Dinv28876 Davidia involucrata HOM05D006150 ORTHO05D007745 6.4e-118 427.9 246 82.1
Psat4g076080 Pisum sativum HOM05D006150 ORTHO05D007745 1.0e-115 420.6 273 72.2
BcaC09g50439 Brassica carinata HOM05D006150 ORTHO05D007745 6.2e-113 411.4 297 68.4
C01p25410 Brassica napus HOM05D006150 ORTHO05D007745 6.2e-113 411.4 297 68.4
SEGI_33649 Sequoiadendron giganteum HOM05D006150 ORTHO05D007745 8.1e-113 411.0 259 75.3
Aa31LG2G13130 Aethionema arabicum HOM05D006150 ORTHO05D007745 2.9e-110 402.5 319 62.7
Sc01g0007980 Simmondsia chinensis HOM05D006150 ORTHO05D007745 7.1e-109 397.9 244 75.0
Prupe.5G055300 Prunus persica HOM05D006150 ORTHO05D007745 2.5e-106 389.4 212 85.8
Pp3c9_12580 Physcomitrium patens HOM05D006150 ORTHO05D007745 1.1e-101 374.0 265 67.5
Oeu012348.1 Olea europaea HOM05D006150 ORTHO05D007745 9.3e-101 370.9 211 82.5
GSVIVG01003685001 Vitis vinifera HOM05D006150 ORTHO05D007745 1.8e-99 366.7 286 65.0
Mapoly0072s0097 Marchantia polymorpha HOM05D006150 ORTHO05D007745 6.2e-97 358.2 268 61.9
AagrBONN_evm.TU.Sc2ySwM_228.2274 Anthoceros agrestis HOM05D006150 ORTHO05D007745 1.1e-96 357.5 254 67.3
SGA_v2.0_scaffold181G39680 Striga asiatica HOM05D006150 ORTHO05D007745 1.4e-96 357.1 243 72.0
Lsat_1_v5_gn_3_15361 Lactuca sativa HOM05D006150 ORTHO05D007745 1.0e-94 350.9 252 70.2
AUR62007167 Chenopodium quinoa HOM05D006150 ORTHO05D007745 5.5e-93 345.1 201 78.6
AUR62018839 Chenopodium quinoa HOM05D006150 ORTHO05D007745 1.2e-92 344.0 201 77.1
Actinidia25909 Actinidia chinensis HOM05D006150 ORTHO05D007745 3.6e-84 315.8 302 58.3
Potri.001G150800 Populus trichocarpa HOM05D006150 ORTHO05D007745 1.6e-71 273.9 194 69.1
MCO07G379 Micromonas commoda HOM05D006150 ORTHO05D007745 2.6e-66 256.5 269 46.5
MD06G1047100 Malus domestica HOM05D006150 ORTHO05D007745 3.3e-66 256.1 264 53.4
Cre06.g290000 Chlamydomonas reinhardtii HOM05D006150 ORTHO05D007745 2.8e-65 253.1 258 49.6
Hma1.2p1_0570F.1_g180440 Hydrangea macrophylla HOM05D006150 ORTHO05D007745 1.2e-58 231.1 129 82.9
MCO04G282 Micromonas commoda HOM05D006150 ORTHO05D007745 1.5e-58 230.7 262 48.9
Sabra01G0120800 Salix brachista HOM05D006150 ORTHO05D007745 4.8e-57 225.7 171 65.5
FAN18G0603 Fragaria x ananassa HOM05D006150 ORTHO05D007745 5.9e-55 218.8 144 72.9
MELO3C014174.2 Cucumis melo HOM05D006150 ORTHO05D007745 8.5e-54 214.9 288 46.2
CSS0048254 Camellia sinensis var. sinensis HOM05D006150 ORTHO05D007745 8.9e-43 178.3 97 87.6
Sabra01G0120600 Salix brachista HOM05D006150 ORTHO05D007745 4.3e-37 159.5 162 54.3
PSO717G0125 Papaver somniferum HOM05D006150 ORTHO05D007745 3.1e-35 153.3 98 73.5
Cpa.g.sc98.38 Carica papaya HOM05D006150 ORTHO05D007745 3.2e-32 143.3 81 77.8
BcaC01g03436 Brassica carinata HOM05D006150 ORTHO05D007745 6.0e-31 139.0 106 62.3
CBR_g38093 Chara braunii HOM05D006150 ORTHO05D007745 1.5e-29 134.4 66 86.4
GSVIVG01021810001 Vitis vinifera HOM05D006150 ORTHO05D007745 4.1e-16 89.7 67 64.2
Cpa.g.sc98.35 Carica papaya HOM05D006150 ORTHO05D007745 1.5e-13 81.3 56 62.5
Oeu040463.1 Olea europaea HOM05D001574 ORTHO05D000708 2.1e-12 77.4 57 66.7
Lsat_1_v5_gn_6_74120 Lactuca sativa HOM05D006150 ORTHO05D233887 1.6e-07 61.2 33 75.8
Lsat_1_v5_gn_2_23540 Lactuca sativa HOM05D002379 ORTHO05D003469 5.1e-06 56.2 95 35.8
Lsat_1_v5_gn_8_14120 Lactuca sativa HOM05D002379 ORTHO05D021531 5.1e-06 56.2 95 35.8
Lsat_1_v5_gn_9_81181 Lactuca sativa HOM05D002379 ORTHO05D003469 5.1e-06 56.2 95 35.8


User provided reference genes

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