Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0019544 Camellia sinensis var. sinensis HOM05D004280 ORTHO05D005059 1.6e-106 389.4 200 100.0
CSS0019811 Camellia sinensis var. sinensis HOM05D004280 ORTHO05D005059 2.8e-98 362.1 200 95.0
Dinv23876 Davidia involucrata HOM05D004280 ORTHO05D005059 2.2e-87 325.9 202 85.1
Nn7g35895 Nelumbo nucifera HOM05D004280 ORTHO05D005059 2.5e-83 312.4 201 82.6
Manes.01G036600 Manihot esculenta HOM05D004280 ORTHO05D005059 1.6e-82 309.7 201 80.1
Lj2A726G7 Lonicera japonica HOM05D004280 ORTHO05D005059 1.1e-81 307.0 203 82.3
ECA248G0362 Erigeron canadensis HOM05D004280 ORTHO05D005059 1.4e-81 306.6 202 80.7
MSTRG.18872 Avicennia marina HOM05D004280 ORTHO05D005059 2.6e-80 302.4 201 78.1
vmacro00623 Vaccinium macrocarpon HOM05D004280 ORTHO05D005059 1.1e-78 297.0 209 78.9
FvH4_3g45340 Fragaria vesca HOM05D004280 ORTHO05D005059 1.9e-78 296.2 205 76.1
RhsimUnG0194900 Rhododendron simsii HOM05D004280 ORTHO05D005059 1.9e-78 296.2 206 79.6
Potri.003G218700 Populus trichocarpa HOM05D004280 ORTHO05D005059 3.2e-78 295.4 201 76.1
Glyma.11G173655 Glycine max HOM05D004280 ORTHO05D005059 4.2e-78 295.0 203 78.3
Glyma.06G309800 Glycine max HOM05D004280 ORTHO05D005059 5.5e-78 294.7 202 77.2
Glyma.14G130400 Glycine max HOM05D004280 ORTHO05D005059 5.5e-78 294.7 202 77.2
Hma1.2p1_0843F.1_g227335 Hydrangea macrophylla HOM05D004280 ORTHO05D005059 5.5e-78 294.7 178 87.1
Hma1.2p1_0843F.1_g227340 Hydrangea macrophylla HOM05D004280 ORTHO05D005059 5.5e-78 294.7 178 87.1
Rhsim09G0027500 Rhododendron simsii HOM05D004280 ORTHO05D005059 5.5e-78 294.7 206 79.1
CiPaw.13G175600 Carya illinoinensis HOM05D004280 ORTHO05D005059 7.2e-78 294.3 203 77.3
ECA233G4188 Erigeron canadensis HOM05D004280 ORTHO05D005059 7.2e-78 294.3 200 77.5
QL01p008475 Quercus lobata HOM05D004280 ORTHO05D005059 7.2e-78 294.3 202 75.2
PGR102G2828 Punica granatum HOM05D004280 ORTHO05D005059 1.6e-77 293.1 194 77.8
Glyma.14G154000 Glycine max HOM05D004280 ORTHO05D005059 2.1e-77 292.7 202 76.7
Phvul.001G056600 Phaseolus vulgaris HOM05D004280 ORTHO05D005059 3.6e-77 292.0 202 76.7
Sc10g0001010 Simmondsia chinensis HOM05D004280 ORTHO05D005059 7.9e-77 290.8 200 79.0
TWI60G1521 Tripterygium wilfordii HOM05D004280 ORTHO05D005059 7.9e-77 290.8 199 77.4
Solyc04g076580.4 Solanum lycopersicum HOM05D004280 ORTHO05D005059 2.3e-76 289.3 200 75.5
MELO3C021620.2 Cucumis melo HOM05D004280 ORTHO05D005059 3.0e-76 288.9 200 77.0
CiPaw.16G086400 Carya illinoinensis HOM05D004280 ORTHO05D005059 3.9e-76 288.5 203 74.4
Ciclev10016632m.g Citrus clementina HOM05D004280 ORTHO05D005059 8.8e-76 287.3 202 74.3
Migut.D02547 Erythranthe guttata HOM05D004280 ORTHO05D005059 1.1e-75 287.0 202 75.7
Haze_22956 Corylus avellana HOM05D004280 ORTHO05D005059 2.0e-75 286.2 204 74.0
Haze_22962 Corylus avellana HOM05D004280 ORTHO05D005059 2.0e-75 286.2 204 74.0
CANSAT01G2556 Cannabis sativa HOM05D004280 ORTHO05D005059 2.6e-75 285.8 206 74.8
Medtr3g083880 Medicago truncatula HOM05D004280 ORTHO05D005059 2.6e-75 285.8 202 74.3
Cpa.g.sc119.63 Carica papaya HOM05D004280 ORTHO05D005059 4.4e-75 285.0 203 75.9
Ca_16394_v3 Cicer arietinum L. HOM05D004280 ORTHO05D005059 4.4e-75 285.0 202 74.3
Lj6g0003060 Lotus japonicus HOM05D004280 ORTHO05D005059 5.7e-75 284.6 202 74.8
Prupe.6G007100 Prunus persica HOM05D004280 ORTHO05D005059 7.4e-75 284.3 201 72.6
SalBow6G7108 Salvia bowleyana HOM05D004280 ORTHO05D005059 3.7e-74 282.0 201 73.1
CAN.G193.6 Capsicum annuum HOM05D004280 ORTHO05D005059 4.8e-74 281.6 200 73.5
Manes.04G095700 Manihot esculenta HOM05D004280 ORTHO05D005059 4.8e-74 281.6 201 73.6
Potri.001G006300 Populus trichocarpa HOM05D004280 ORTHO05D005059 4.8e-74 281.6 185 76.8
CsaV3_5G026740 Cucumis sativus L. HOM05D004280 ORTHO05D005059 6.3e-74 281.2 200 75.5
VMungo0647G2277 Vigna mungo HOM05D004280 ORTHO05D005059 6.3e-74 281.2 202 75.2
Atru.chr1.3614 Acer truncatum HOM05D004280 ORTHO05D005059 8.2e-74 280.8 201 73.1
RcHm_v2.0_Chr5g0083141 Rosa chinensis HOM05D004280 ORTHO05D005059 8.2e-74 280.8 204 73.0
TPR.G24159 Trifolium pratense HOM05D004280 ORTHO05D005059 1.1e-73 280.4 209 73.2
RcHm_v2.0_Chr4g0431981 Rosa chinensis HOM05D004280 ORTHO05D005059 1.4e-73 280.0 204 72.5
ClCG09G019650 Citrullus lanatus HOM05D004280 ORTHO05D005059 6.9e-73 277.7 219 70.8
Lsat_1_v5_gn_1_67700 Lactuca sativa HOM05D004280 ORTHO05D005059 1.2e-72 276.9 200 74.0
DCAR_009024 Daucus carota HOM05D004280 ORTHO05D005059 5.9e-72 274.6 208 75.0
Duzib170G0536 Durio zibethinus HOM05D004280 ORTHO05D005059 7.7e-72 274.2 171 79.5
FAN21G3004 Fragaria x ananassa HOM05D004280 ORTHO05D005059 2.9e-71 272.3 205 72.2
Gohir.D08G021800 Gossypium hirsutum HOM05D004280 ORTHO05D005059 3.8e-71 271.9 179 78.2
FAN16G1471 Fragaria x ananassa HOM05D004280 ORTHO05D005059 6.5e-71 271.2 235 64.7
Thecc.09G208500 Theobroma cacao HOM05D004280 ORTHO05D005059 8.5e-71 270.8 177 78.0
Peaxi162Scf01112g00112 Petunia axillaris HOM05D004280 ORTHO05D005059 1.1e-70 270.4 202 73.8
Psat5g102320 Pisum sativum HOM05D004280 ORTHO05D005059 1.4e-70 270.0 203 70.4
GSVIVG01025433001 Vitis vinifera HOM05D004280 ORTHO05D005059 6.1e-69 264.6 145 91.0
MBI05_g32463_MAGBIO Magnolia biondii HOM05D004280 ORTHO05D005059 6.7e-68 261.2 195 73.8
Ah.04g157750 Amaranthus hybridus HOM05D004280 ORTHO05D005059 8.8e-68 260.8 211 67.8
AT1G55300 Arabidopsis thaliana HOM05D004280 ORTHO05D005059 1.5e-67 260.0 207 67.6
Sed0023881 Sechium edule HOM05D004280 ORTHO05D005059 2.6e-67 259.2 148 87.2
Gohir.A08G011300 Gossypium hirsutum HOM05D004280 ORTHO05D005059 3.3e-67 258.8 160 78.8
Duzib150G0115 Durio zibethinus HOM05D004280 ORTHO05D005059 4.4e-67 258.5 169 76.9
Sabra01G0004700 Salix brachista HOM05D004280 ORTHO05D005059 5.7e-67 258.1 188 71.8
TAR623G1159 Trochodendron aralioides HOM05D004280 ORTHO05D005059 5.7e-67 258.1 148 88.5
SalBow4G3146 Salvia bowleyana HOM05D004280 ORTHO05D005059 9.7e-67 257.3 247 59.9
COL.COLO4_35029 Corchorus olitorius HOM05D004280 ORTHO05D005059 2.2e-66 256.1 173 75.1
Aqoxy7G03617 Aquilegia oxysepala HOM05D004280 ORTHO05D005059 3.7e-66 255.4 148 86.5
Carub.0001s4380 Capsella rubella HOM05D004280 ORTHO05D005059 4.8e-66 255.0 206 67.0
arahy.Tifrunner.gnm1.ann1.0AF3IJ Arachis hypogaea HOM05D004280 ORTHO05D005059 1.4e-65 253.4 151 83.4
PGSC0003DMG401025662 Solanum tuberosum HOM05D004280 ORTHO05D005059 2.4e-65 252.7 147 83.7
MD11G1008600 Malus domestica HOM05D004280 ORTHO05D005059 4.1e-65 251.9 147 80.3
Ah.04g157660 Amaranthus hybridus HOM05D004280 ORTHO05D005059 5.3e-65 251.5 211 65.9
FAN25G1542 Fragaria x ananassa HOM05D004280 ORTHO05D005059 7.0e-65 251.1 148 83.8
Cc01_g00630 Coffea canephora HOM05D004280 ORTHO05D005059 9.1e-65 250.8 149 84.6
MD03G1005700 Malus domestica HOM05D004280 ORTHO05D005059 9.1e-65 250.8 147 80.3
Rhsim02G0077200 Rhododendron simsii HOM05D004280 ORTHO05D005059 9.1e-65 250.8 151 83.4
Os05g0347000 Oryza sativa ssp. japonica HOM05D004280 ORTHO05D005059 1.2e-64 250.4 205 69.8
Cc05_g01230 Coffea canephora HOM05D004280 ORTHO05D005059 1.6e-64 250.0 149 83.9
Gorai.004G017100 Gossypium raimondii HOM05D004280 ORTHO05D005059 1.6e-64 250.0 148 81.8
PSO210G5203 Papaver somniferum HOM05D004280 ORTHO05D005059 2.0e-64 249.6 165 79.4
PSO761G0405 Papaver somniferum HOM05D004280 ORTHO05D005059 2.0e-64 249.6 165 79.4
SGA_v2.0_scaffold693G53465 Striga asiatica HOM05D004280 ORTHO05D005059 3.5e-64 248.8 201 69.2
FAN11G0747 Fragaria x ananassa HOM05D004280 ORTHO05D005059 4.5e-64 248.4 148 83.1
SEGI_26181 Sequoiadendron giganteum HOM05D004280 ORTHO05D005059 4.5e-64 248.4 205 66.8
Thhalv10011786m.g Eutrema salsugineum HOM05D004280 ORTHO05D005059 5.9e-64 248.1 209 65.6
SGA_v2.0_scaffold329G48825 Striga asiatica HOM05D004280 ORTHO05D005059 5.9e-64 248.1 202 68.8
SGA_v2.0_scaffold552G52891 Striga asiatica HOM05D004280 ORTHO05D005059 7.7e-64 247.7 201 68.7
CARHR044950 Cardamine hirsuta HOM05D004280 ORTHO05D005059 1.7e-63 246.5 206 65.5
Sabra03G0163100 Salix brachista HOM05D004280 ORTHO05D005059 1.7e-63 246.5 148 82.4
HPP92_017297 Vanilla planifolia HOM05D004280 ORTHO05D005059 3.8e-63 245.4 146 81.5
SGA_v2.0_scaffold738G53541 Striga asiatica HOM05D004280 ORTHO05D005059 5.0e-63 245.0 202 67.8
Lsat_1_v5_gn_6_54260 Lactuca sativa HOM05D004280 ORTHO05D005059 8.5e-63 244.2 201 67.2
ATR0681G021 Amborella trichopoda HOM05D004280 ORTHO05D005059 1.1e-62 243.8 240 61.7
Zm00001eb233380 Zea mays HOM05D004280 ORTHO05D005059 1.1e-62 243.8 204 69.1
Sp1g40960 Schrenkiella parvula HOM05D004280 ORTHO05D005059 1.5e-62 243.4 214 64.5
unitig_749.g13584 Utricularia gibba HOM05D004280 ORTHO05D005059 1.5e-62 243.4 148 82.4
SGA_v2.0_scaffold13G06338 Striga asiatica HOM05D004280 ORTHO05D005059 4.2e-62 241.9 147 83.0
Hund03769 Selenicereus undatus HOM05D004280 ORTHO05D005059 9.4e-62 240.7 141 87.2
HanXRQChr13g0405321 Helianthus annuus HOM05D004280 ORTHO05D005059 2.7e-61 239.2 147 83.0
BraA05t20650Z Brassica rapa HOM05D004280 ORTHO05D005059 1.0e-60 237.3 212 62.3
PGSC0003DMG400009351 Solanum tuberosum HOM05D004280 ORTHO05D005059 1.4e-60 236.9 200 66.0
SGA_v2.0_scaffold521G52700 Striga asiatica HOM05D004280 ORTHO05D005059 1.4e-60 236.9 218 63.8
SGA_v2.0_scaffold674G53431 Striga asiatica HOM05D004280 ORTHO05D005059 1.4e-60 236.9 218 63.8
Aa31LG10G1060 Aethionema arabicum HOM05D004280 ORTHO05D005059 1.8e-60 236.5 182 68.7
Eucgr.B03612 Eucalyptus grandis HOM05D004280 ORTHO05D005059 3.0e-60 235.7 148 81.8
C06p10250 Brassica napus HOM05D004280 ORTHO05D005059 5.2e-60 235.0 178 69.1
BcaC08g44186 Brassica carinata HOM05D004280 ORTHO05D005059 8.8e-60 234.2 185 67.6
BolC6t36098H Brassica oleracea HOM05D004280 ORTHO05D005059 2.6e-59 232.6 146 78.8
A05p17570 Brassica napus HOM05D004280 ORTHO05D005059 7.5e-59 231.1 213 62.0
Lalb_Chr08g0230321 Lupinus albus HOM05D004280 ORTHO05D005059 9.7e-59 230.7 160 73.8
BcaB02g10831 Brassica carinata HOM05D004280 ORTHO05D005059 1.3e-58 230.3 155 74.8
BolC6t36783H Brassica oleracea HOM05D004280 ORTHO05D005059 1.7e-58 229.9 148 77.0
C06p15910 Brassica napus HOM05D004280 ORTHO05D005059 4.8e-58 228.4 185 65.9
THA.LOC104822674 Tarenaya hassleriana HOM05D004280 ORTHO05D005059 6.3e-58 228.0 201 61.2
A06p00280 Brassica napus HOM05D004280 ORTHO05D005059 8.2e-58 227.6 161 72.7
SGA_v2.0_scaffold674G53436 Striga asiatica HOM05D004280 ORTHO05D005059 8.2e-58 227.6 218 61.9
BraA06t23245Z Brassica rapa HOM05D004280 ORTHO05D005059 1.4e-57 226.9 210 61.9
Nitab4.5_0000131g0050 Nicotiana tabacum HOM05D004280 ORTHO05D005059 3.1e-57 225.7 167 71.3
AagrBONN_evm.TU.Sc2ySwM_344.2640 Anthoceros agrestis HOM05D004280 ORTHO05D005059 4.1e-57 225.3 153 72.5
Os01g0648500 Oryza sativa ssp. japonica HOM05D004280 ORTHO05D005059 2.0e-56 223.0 194 67.0
Mapoly0011s0044 Marchantia polymorpha HOM05D004280 ORTHO05D005059 3.5e-56 222.2 182 65.9
Phvul.001G056500 Phaseolus vulgaris HOM05D004280 ORTHO05D005059 1.3e-55 220.3 154 74.7
AUR62015306 Chenopodium quinoa HOM05D004280 ORTHO05D005059 2.9e-55 219.2 177 66.7
Zm00001eb059570 Zea mays HOM05D004280 ORTHO05D005059 1.5e-54 216.9 148 75.0
AUR62032745 Chenopodium quinoa HOM05D004280 ORTHO05D005059 2.5e-54 216.1 177 65.5
HanXRQChr01g0021661 Helianthus annuus HOM05D004280 ORTHO05D005059 4.2e-54 215.3 122 87.7
Zm00001eb395740 Zea mays HOM05D004280 ORTHO05D005059 5.5e-54 214.9 149 73.8
Pp3c14_18710 Physcomitrium patens HOM05D004280 ORTHO05D005059 2.7e-53 212.6 217 58.1
SEGI_04342 Sequoiadendron giganteum HOM05D004280 ORTHO05D005059 8.8e-52 207.6 200 59.5
Pp3c1_41986 Physcomitrium patens HOM05D004280 ORTHO05D005059 1.2e-51 207.2 146 71.9
Cfa009582 Carpinus fangiana HOM05D004280 ORTHO05D005059 2.2e-50 203.0 225 54.7
AL1G63340 Arabidopsis lyrata HOM05D004280 ORTHO05D005059 3.7e-50 202.2 159 67.3
Oeu059672.2 Olea europaea HOM05D004280 ORTHO05D005059 3.7e-50 202.2 122 81.1
Sed0016974 Sechium edule HOM05D004280 ORTHO05D005059 1.4e-49 200.3 189 58.2
CBR_g22380 Chara braunii HOM05D004280 ORTHO05D005059 1.2e-48 197.2 160 61.9
Zm00001eb068820 Zea mays HOM05D004280 ORTHO05D005059 2.7e-48 196.1 193 60.6
Nitab4.5_0006954g0010 Nicotiana tabacum HOM05D004280 ORTHO05D005059 1.5e-46 190.3 144 70.8
Cc01_g02840 Coffea canephora HOM05D004280 ORTHO05D005059 1.9e-46 189.9 149 69.8
SMO146G0138 Selaginella moellendorffii HOM05D004280 ORTHO05D005059 2.5e-46 189.5 205 52.2
SMO169G0010 Selaginella moellendorffii HOM05D004280 ORTHO05D005059 9.5e-46 187.6 149 63.1
SGA_v2.0_scaffold6G03409 Striga asiatica HOM05D004280 ORTHO05D005059 6.8e-44 181.4 163 62.0
SGA_v2.0_scaffold2280G54098 Striga asiatica HOM05D004280 ORTHO05D005059 2.6e-43 179.5 109 81.7
Haze_22967 Corylus avellana HOM05D004280 ORTHO05D005059 2.2e-42 176.4 106 81.1
Cc00_g23960 Coffea canephora HOM05D004280 ORTHO05D005059 2.4e-41 172.9 117 76.1
Dinv13451 Davidia involucrata HOM05D004280 ORTHO05D005059 1.6e-37 160.2 92 90.2
Actinidia11301 Actinidia chinensis HOM05D004280 ORTHO05D005059 5.2e-36 155.2 90 90.0
Sopen00g013070 Solanum pennellii HOM05D004280 ORTHO05D005059 2.2e-34 149.8 135 62.2
Glyma.17G202802 Glycine max HOM05D004280 ORTHO05D005059 3.2e-33 146.0 81 85.2
Atru.chr7.1077 Acer truncatum HOM05D004280 ORTHO05D005059 1.3e-31 140.6 131 60.3
Zm00001eb211560 Zea mays HOM05D004280 ORTHO05D005059 1.2e-27 127.5 201 46.8
AagrBONN_evm.TU.Sc2ySwM_362.2805 Anthoceros agrestis HOM05D004280 ORTHO05D005059 6.2e-21 105.1 96 56.2
Cc00_g20490 Coffea canephora HOM05D004280 ORTHO05D005059 6.2e-21 105.1 84 66.7
Cre01.g011200 Chlamydomonas reinhardtii HOM05D004280 ORTHO05D005059 8.9e-20 101.3 139 38.1
PRCOL_00003189 Prasinoderma coloniale HOM05D004280 ORTHO05D005059 1.7e-18 97.1 175 32.6
EL10Ac4g09635 Beta vulgaris HOM05D004280 ORTHO05D005059 8.6e-15 84.7 77 59.7
Thhalv10012232m.g Eutrema salsugineum HOM05D004280 ORTHO05D005059 3.4e-11 72.8 68 57.4
Cfa024345 Carpinus fangiana HOM05D004280 ORTHO05D122617 1.7e-10 70.5 188 30.9
unitig_26.g9445 Utricularia gibba HOM05D004280 ORTHO05D005059 1.9e-09 67.0 88 46.6
Haze_22969 Corylus avellana HOM05D000479 ORTHO05D044822 2.3e-07 60.1 102 42.2
ECA233G4675 Erigeron canadensis HOM05D004280 ORTHO05D003273 3.0e-07 59.7 32 81.2
Sopen04g030300 Solanum pennellii HOM05D004280 ORTHO05D005059 5.1e-07 58.9 81 48.1
COL.COLO4_35031 Corchorus olitorius HOM05D032132 ORTHO05D005059 6.6e-07 58.5 51 68.6


User provided reference genes

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