Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0019537 Camellia sinensis var. sinensis HOM05D005417 ORTHO05D002591 5.9e-220 767.3 411 100.0
Dinv19167 Davidia involucrata HOM05D005417 ORTHO05D002591 9.5e-101 371.3 426 59.6
Rhsim01G0253400 Rhododendron simsii HOM05D005417 ORTHO05D002591 2.5e-93 346.7 447 54.6
vmacro02785 Vaccinium macrocarpon HOM05D005417 ORTHO05D002591 2.2e-89 333.6 447 50.6
QL09p051098 Quercus lobata HOM05D005417 ORTHO05D002591 1.9e-85 320.5 417 49.6
Manes.13G049800 Manihot esculenta HOM05D005417 ORTHO05D002591 1.2e-84 317.8 421 50.6
QL09p050923 Quercus lobata HOM05D005417 ORTHO05D002591 3.6e-84 316.2 417 49.2
Actinidia39427 Actinidia chinensis HOM05D005417 ORTHO05D002591 2.0e-82 310.5 416 53.4
Manes.12G047700 Manihot esculenta HOM05D005417 ORTHO05D002591 7.6e-82 308.5 419 50.8
Rhsim13G0048000 Rhododendron simsii HOM05D005417 ORTHO05D002591 1.7e-81 307.4 411 50.4
Prupe.8G197900 Prunus persica HOM05D005417 ORTHO05D002591 2.5e-77 293.5 445 48.1
Potri.002G246400 Populus trichocarpa HOM05D005417 ORTHO05D002591 3.6e-76 289.7 451 46.8
TWI75G1481 Tripterygium wilfordii HOM05D005417 ORTHO05D002591 4.0e-75 286.2 424 46.9
Sabra02G0187500 Salix brachista HOM05D005417 ORTHO05D002591 3.8e-73 279.6 470 45.3
Thecc.01G219200 Theobroma cacao HOM05D005417 ORTHO05D002591 1.1e-72 278.1 450 46.9
Gorai.007G156400 Gossypium raimondii HOM05D005417 ORTHO05D002591 4.2e-72 276.2 451 44.8
Gohir.A11G139800 Gossypium hirsutum HOM05D005417 ORTHO05D002591 7.1e-72 275.4 450 44.9
Gohir.D11G145866 Gossypium hirsutum HOM05D005417 ORTHO05D002591 9.3e-72 275.0 451 44.8
MD05G1170600 Malus domestica HOM05D005417 ORTHO05D002591 1.1e-69 268.1 437 46.7
Dinv12644 Davidia involucrata HOM05D005417 ORTHO05D002591 1.9e-69 267.3 420 48.8
Cfa010419 Carpinus fangiana HOM05D005417 ORTHO05D002591 5.3e-67 259.2 420 44.5
Nitab4.5_0002985g0020 Nicotiana tabacum HOM05D005417 ORTHO05D002591 4.9e-65 252.7 385 46.8
Duzib211G0292 Durio zibethinus HOM05D005417 ORTHO05D002591 6.4e-65 252.3 455 42.9
Oeu007785.1 Olea europaea HOM05D005417 ORTHO05D002591 2.7e-63 246.9 424 44.8
COL.COLO4_08651 Corchorus olitorius HOM05D005417 ORTHO05D002591 1.7e-62 244.2 467 41.1
Oeu051530.1 Olea europaea HOM05D005417 ORTHO05D002591 2.3e-62 243.8 429 45.2
Psat3g149440 Pisum sativum HOM05D005417 ORTHO05D002591 5.1e-62 242.7 448 41.5
CiPaw.13G049000 Carya illinoinensis HOM05D005417 ORTHO05D002591 6.6e-62 242.3 440 43.0
CiPaw.14G038800 Carya illinoinensis HOM05D005417 ORTHO05D002591 1.9e-61 240.7 437 42.1
Peaxi162Scf00372g00102 Petunia axillaris HOM05D005417 ORTHO05D002591 7.4e-61 238.8 420 43.1
TAR365G0760 Trochodendron aralioides HOM05D005417 ORTHO05D002591 6.2e-60 235.7 464 40.3
Lj1g0009273 Lotus japonicus HOM05D005417 ORTHO05D002591 2.4e-59 233.8 445 42.5
TWI18G1450 Tripterygium wilfordii HOM05D005417 ORTHO05D002591 4.0e-59 233.0 423 41.4
Nn1g07983 Nelumbo nucifera HOM05D005417 ORTHO05D002591 5.3e-59 232.6 415 42.2
Nitab4.5_0001161g0100 Nicotiana tabacum HOM05D005417 ORTHO05D002591 1.2e-58 231.5 433 44.3
MD10G1158800 Malus domestica HOM05D005417 ORTHO05D002591 1.5e-58 231.1 428 43.2
vmacro14737 Vaccinium macrocarpon HOM05D005417 ORTHO05D002591 1.3e-57 228.0 346 49.1
PGSC0003DMG400022034 Solanum tuberosum HOM05D005417 ORTHO05D002591 2.2e-57 227.3 398 43.5
MSTRG.18834 Avicennia marina HOM05D005417 ORTHO05D002591 8.4e-57 225.3 457 40.5
VMungo1383G0191 Vigna mungo HOM05D005417 ORTHO05D002591 8.4e-57 225.3 481 38.5
Phvul.008G132000 Phaseolus vulgaris HOM05D005417 ORTHO05D002591 1.9e-56 224.2 477 38.8
Cc01_g16680 Coffea canephora HOM05D005417 ORTHO05D002591 7.1e-56 222.2 466 39.9
BraA07t28509Z Brassica rapa HOM05D005417 ORTHO05D002591 2.8e-52 210.3 437 40.0
A07p07230 Brassica napus HOM05D005417 ORTHO05D002591 1.1e-51 208.4 438 39.7
Migut.D02505 Erythranthe guttata HOM05D005417 ORTHO05D002591 3.1e-51 206.8 496 38.1
arahy.Tifrunner.gnm1.ann1.K8JSLF Arachis hypogaea HOM05D005417 ORTHO05D002591 2.0e-50 204.1 399 39.1
FAN15G1498 Fragaria x ananassa HOM05D005417 ORTHO05D002591 2.6e-50 203.8 598 34.6
Medtr7g055560 Medicago truncatula HOM05D005417 ORTHO05D002591 2.6e-50 203.8 445 40.7
Medtr7g055747 Medicago truncatula HOM05D005417 ORTHO05D002591 2.6e-50 203.8 445 40.7
Eucgr.K02134 Eucalyptus grandis HOM05D005417 ORTHO05D002591 3.4e-50 203.4 446 38.6
Nitab4.5_0002641g0180 Nicotiana tabacum HOM05D005417 ORTHO05D002591 5.8e-50 202.6 411 40.9
DCAR_012672 Daucus carota HOM05D005417 ORTHO05D002591 8.4e-49 198.7 460 38.3
PSO063G3464 Papaver somniferum HOM05D005417 ORTHO05D002591 8.4e-49 198.7 409 37.7
FAN24G0779 Fragaria x ananassa HOM05D005417 ORTHO05D002591 1.9e-48 197.6 600 33.3
TAR636G0419 Trochodendron aralioides HOM05D005417 ORTHO05D002591 1.9e-48 197.6 362 39.8
FvH4_2g18490 Fragaria vesca HOM05D005417 ORTHO05D002591 4.2e-48 196.4 598 34.1
RcHm_v2.0_Chr6g0284001 Rosa chinensis HOM05D005417 ORTHO05D002591 7.1e-48 195.7 601 32.9
C07p10920 Brassica napus HOM05D005417 ORTHO05D002591 9.3e-48 195.3 445 37.3
Atru.chr6.1429 Acer truncatum HOM05D005417 ORTHO05D002591 1.2e-47 194.9 410 39.0
BcaC06g35784 Brassica carinata HOM05D005417 ORTHO05D002591 1.2e-47 194.9 445 37.3
BolC7t41558H Brassica oleracea HOM05D005417 ORTHO05D002591 1.2e-47 194.9 445 37.3
FAN27G1148 Fragaria x ananassa HOM05D005417 ORTHO05D002591 2.1e-47 194.1 592 32.3
Ciclev10024373m.g Citrus clementina HOM05D005417 ORTHO05D002591 6.0e-47 192.6 445 38.4
Gohir.A07G092900 Gossypium hirsutum HOM05D005417 ORTHO05D002591 1.3e-46 191.4 428 39.3
Nn3g20048 Nelumbo nucifera HOM05D005417 ORTHO05D002591 5.1e-46 189.5 415 38.1
Nn3g20049 Nelumbo nucifera HOM05D005417 ORTHO05D002591 5.1e-46 189.5 415 38.1
Sopen06g002670 Solanum pennellii HOM05D005417 ORTHO05D002591 1.1e-45 188.3 399 39.1
Sp3g22720 Schrenkiella parvula HOM05D005417 ORTHO05D002591 2.5e-45 187.2 422 39.3
CAN.G800.6 Capsicum annuum HOM05D005417 ORTHO05D002591 4.3e-45 186.4 405 40.0
Ca_03471_v3 Cicer arietinum L. HOM05D005417 ORTHO05D002591 1.3e-44 184.9 244 45.5
Solyc06g007790.1 Solanum lycopersicum HOM05D005417 ORTHO05D002591 1.8e-43 181.0 399 38.8
Gohir.D07G097400 Gossypium hirsutum HOM05D005417 ORTHO05D002591 2.4e-43 180.6 426 38.7
Gorai.001G188400 Gossypium raimondii HOM05D005417 ORTHO05D002591 2.4e-43 180.6 415 37.6
Peaxi162Scf00068g00216 Petunia axillaris HOM05D005417 ORTHO05D002591 2.4e-43 180.6 265 45.7
Sc05g0001930 Simmondsia chinensis HOM05D005417 ORTHO05D002591 3.1e-43 180.3 420 37.1
CAN.G181.55 Capsicum annuum HOM05D005417 ORTHO05D002591 4.1e-43 179.9 398 38.2
EL10Ac7g17913 Beta vulgaris HOM05D005417 ORTHO05D002591 5.9e-42 176.0 429 38.5
Aa31sc95G70 Aethionema arabicum HOM05D005417 ORTHO05D002591 7.6e-42 175.6 421 37.3
PGSC0003DMG400017495 Solanum tuberosum HOM05D005417 ORTHO05D002591 2.2e-41 174.1 422 38.2
Glyma.18G159700 Glycine max HOM05D005417 ORTHO05D002591 2.9e-41 173.7 520 32.7
Lalb_Chr03g0041401 Lupinus albus HOM05D005417 ORTHO05D002591 6.5e-41 172.6 135 64.4
SalBow6G1220 Salvia bowleyana HOM05D005417 ORTHO05D002591 3.2e-40 170.2 421 35.9
Solyc09g059550.1 Solanum lycopersicum HOM05D005417 ORTHO05D002591 3.2e-40 170.2 417 36.9
PGR083G2240 Punica granatum HOM05D005417 ORTHO05D002591 4.2e-40 169.9 398 34.4
Sopen09g022730 Solanum pennellii HOM05D005417 ORTHO05D002591 4.2e-40 169.9 412 37.1
MSTRG.20970 Avicennia marina HOM05D005417 ORTHO05D002591 5.5e-40 169.5 452 35.8
AT3G25130 Arabidopsis thaliana HOM05D005417 ORTHO05D002591 4.6e-39 166.4 437 37.5
HanXRQChr10g0279531 Helianthus annuus HOM05D005417 ORTHO05D002591 1.0e-38 165.2 502 34.5
Lsat_1_v5_gn_9_14981 Lactuca sativa HOM05D005417 ORTHO05D002591 1.3e-38 164.9 423 37.8
Nitab4.5_0003656g0060 Nicotiana tabacum HOM05D005417 ORTHO05D002591 2.3e-38 164.1 191 52.9
SGA_v2.0_scaffold156G37265 Striga asiatica HOM05D005417 ORTHO05D002591 3.9e-38 163.3 410 34.9
ECA248G2280 Erigeron canadensis HOM05D005417 ORTHO05D002591 5.1e-38 162.9 402 35.3
Glyma.08G348101 Glycine max HOM05D005417 ORTHO05D002591 5.1e-38 162.9 258 41.5
Gorai.001G104900 Gossypium raimondii HOM05D005417 ORTHO05D002591 8.7e-38 162.2 426 36.4
ClCG07G002110 Citrullus lanatus HOM05D005417 ORTHO05D002591 1.5e-37 161.4 319 39.5
PSO017G4959 Papaver somniferum HOM05D005417 ORTHO05D002591 3.3e-37 160.2 416 33.4
Cpa.g.sc34.103 Carica papaya HOM05D005417 ORTHO05D002591 4.3e-37 159.8 432 37.0
AL3G40820 Arabidopsis lyrata HOM05D005417 ORTHO05D002591 1.6e-36 157.9 448 36.2
Carub.0003s2546 Capsella rubella HOM05D005417 ORTHO05D002591 3.1e-35 153.7 424 35.8
Gohir.A07G161200 Gossypium hirsutum HOM05D005417 ORTHO05D002591 6.9e-35 152.5 415 35.2
TPR.G976 Trifolium pratense HOM05D005417 ORTHO05D002591 1.5e-34 151.4 402 36.1
Aqoxy2G03972 Aquilegia oxysepala HOM05D005417 ORTHO05D002591 4.5e-34 149.8 350 34.0
PGR044G1095 Punica granatum HOM05D005417 ORTHO05D002591 4.5e-34 149.8 434 35.5
BcaB06g26721 Brassica carinata HOM05D005417 ORTHO05D002591 6.5e-33 146.0 387 35.7
MELO3C022719.2 Cucumis melo HOM05D005417 ORTHO05D002591 1.6e-31 141.4 133 60.2
Haze_03369 Corylus avellana HOM05D005417 ORTHO05D002591 4.6e-31 139.8 314 37.6
ECA247G2945 Erigeron canadensis HOM05D005417 ORTHO05D002591 4.6e-31 139.8 241 42.3
MBI11_g07415_MAGBIO Magnolia biondii HOM05D005417 ORTHO05D002591 3.9e-30 136.7 387 36.2
SGA_v2.0_scaffold3G01638 Striga asiatica HOM05D005417 ORTHO05D002591 1.3e-28 131.7 406 32.3
Nitab4.5_0013864g0020 Nicotiana tabacum HOM05D005417 ORTHO05D002591 8.2e-28 129.0 219 39.7
Nitab4.5_0003020g0050 Nicotiana tabacum HOM05D005417 ORTHO05D002591 5.3e-27 126.3 278 36.3
THA.LOC104804626 Tarenaya hassleriana HOM05D005417 ORTHO05D002591 2.0e-26 124.4 459 32.0
HanXRQChr01g0015481 Helianthus annuus HOM05D005417 ORTHO05D002591 2.6e-26 124.0 540 28.3
Peaxi162Scf01312g00003 Petunia axillaris HOM05D005417 ORTHO05D002591 1.0e-25 122.1 125 56.0
Sed0010610 Sechium edule HOM05D005417 ORTHO05D002591 2.9e-25 120.6 498 30.1
CARHR101450 Cardamine hirsuta HOM05D005417 ORTHO05D002591 6.5e-25 119.4 325 35.4
Solyc06g083330.2 Solanum lycopersicum HOM05D005417 ORTHO05D002591 1.9e-24 117.9 121 53.7
MBI07_g27364_MAGBIO Magnolia biondii HOM05D005417 ORTHO05D002591 5.5e-24 116.3 121 59.5
PGSC0003DMG400020102 Solanum tuberosum HOM05D005417 ORTHO05D002591 7.2e-24 115.9 121 54.5
Sopen06g034710 Solanum pennellii HOM05D005417 ORTHO05D002591 2.7e-23 114.0 121 55.4
HPP92_009946 Vanilla planifolia HOM05D005417 ORTHO05D002591 6.7e-22 109.4 143 45.5
ATR0561G108 Amborella trichopoda HOM05D005417 ORTHO05D002591 5.3e-19 99.8 424 29.0
Gohir.D07G164700 Gossypium hirsutum HOM05D005417 ORTHO05D002591 2.0e-18 97.8 383 30.8
SalBow5G5435 Salvia bowleyana HOM05D005417 ORTHO05D002591 1.3e-17 95.1 223 35.4
TPR.G6388 Trifolium pratense HOM05D005417 ORTHO05D002591 2.5e-16 90.9 65 69.2
unitig_749.g13592 Utricularia gibba HOM05D005417 ORTHO05D002591 3.6e-15 87.0 396 27.8
AUR62016544 Chenopodium quinoa HOM05D005417 ORTHO05D002591 5.2e-14 83.2 246 30.1
MELO3C021078.2 Cucumis melo HOM05D005417 ORTHO05D002591 3.3e-13 80.5 407 27.0
Lj5g0025661 Lotus japonicus HOM05D005417 ORTHO05D002591 7.5e-13 79.3 145 35.2
Zm00001eb090480 Zea mays HOM05D005417 ORTHO05D002591 9.7e-13 79.0 145 42.1
unitig_899.g15407 Utricularia gibba HOM05D005417 ORTHO05D002591 4.8e-12 76.6 402 27.6
CDE05G3071 Ceratophyllum demersum HOM05D000186 ORTHO05D002329 2.7e-10 70.9 209 25.8
ClCG09G008640 Citrullus lanatus HOM05D005417 ORTHO05D002591 3.5e-10 70.5 407 24.8
Os11g0458100 Oryza sativa ssp. japonica HOM05D005417 ORTHO05D002591 3.5e-10 70.5 140 40.0
Sed0007907 Sechium edule HOM05D005417 ORTHO05D002591 8.5e-09 65.9 404 26.5
SEGI_26671 Sequoiadendron giganteum HOM05D038370 ORTHO05D037583 2.1e-07 61.2 91 42.9
AUR62001135 Chenopodium quinoa HOM05D005417 ORTHO05D002591 1.0e-06 58.9 216 30.6


User provided reference genes

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