Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0019536 Camellia sinensis var. sinensis HOM05D005851 ORTHO05D007137 1.6e-129 466.1 231 100.0
Actinidia14484 Actinidia chinensis HOM05D005851 ORTHO05D007137 4.4e-63 245.4 194 73.2
vmacro00216 Vaccinium macrocarpon HOM05D005851 ORTHO05D007137 3.0e-59 232.6 164 75.0
Hma1.2p1_0367F.1_g137205 Hydrangea macrophylla HOM05D005851 ORTHO05D007137 5.1e-59 231.9 198 65.2
Rhsim05G0172500 Rhododendron simsii HOM05D005851 ORTHO05D007137 8.6e-59 231.1 152 81.6
QL12p015621 Quercus lobata HOM05D005851 ORTHO05D007137 3.3e-58 229.2 162 76.5
Oeu064711.1 Olea europaea HOM05D005851 ORTHO05D007137 7.3e-58 228.0 187 65.8
TAR629G1703 Trochodendron aralioides HOM05D005851 ORTHO05D007137 9.5e-58 227.6 203 65.0
RcHm_v2.0_Chr7g0200451 Rosa chinensis HOM05D005851 ORTHO05D007137 1.2e-55 220.7 164 72.6
Atru.chr9.1473 Acer truncatum HOM05D005851 ORTHO05D007137 1.5e-55 220.3 190 62.6
FAN04G1422 Fragaria x ananassa HOM05D005851 ORTHO05D007137 3.4e-55 219.2 166 71.7
MBI12_g34479_MAGBIO Magnolia biondii HOM05D005851 ORTHO05D007137 1.4e-53 213.8 221 56.1
FvH4_5g00940 Fragaria vesca HOM05D005851 ORTHO05D007137 2.4e-53 213.0 167 69.5
Gohir.A12G222500 Gossypium hirsutum HOM05D005851 ORTHO05D007137 3.2e-53 212.6 137 78.8
Peaxi162Scf00620g00019 Petunia axillaris HOM05D005851 ORTHO05D007137 3.2e-53 212.6 145 75.9
FAN13G0774 Fragaria x ananassa HOM05D005851 ORTHO05D007137 4.1e-53 212.2 150 74.7
Gorai.008G241100 Gossypium raimondii HOM05D005851 ORTHO05D007137 5.4e-53 211.8 138 78.3
HanXRQChr09g0246661 Helianthus annuus HOM05D005851 ORTHO05D007137 7.1e-53 211.5 166 69.9
Solyc08g079680.3 Solanum lycopersicum HOM05D005851 ORTHO05D007137 7.1e-53 211.5 179 64.2
Gohir.D12G225000 Gossypium hirsutum HOM05D005851 ORTHO05D007137 9.2e-53 211.1 137 78.1
Cpa.g.sc29.62 Carica papaya HOM05D005851 ORTHO05D007137 1.2e-52 210.7 164 70.1
Sopen08g028040 Solanum pennellii HOM05D005851 ORTHO05D007137 1.2e-52 210.7 179 64.8
PGSC0003DMG400003949 Solanum tuberosum HOM05D005851 ORTHO05D007137 2.7e-52 209.5 179 64.2
MD06G1068000 Malus domestica HOM05D005851 ORTHO05D007137 4.6e-52 208.8 138 79.0
Sc01g0009080 Simmondsia chinensis HOM05D005851 ORTHO05D007137 6.0e-52 208.4 150 72.0
SGA_v2.0_scaffold144G35989 Striga asiatica HOM05D005851 ORTHO05D007137 6.0e-52 208.4 139 76.3
Duzib205G1229 Durio zibethinus HOM05D005851 ORTHO05D007137 7.8e-52 208.0 129 80.6
ECA233G5981 Erigeron canadensis HOM05D005851 ORTHO05D007137 1.3e-51 207.2 137 79.6
Solyc08g007580.4 Solanum lycopersicum HOM05D005851 ORTHO05D007137 1.7e-51 206.8 158 71.5
TWI60G0484 Tripterygium wilfordii HOM05D005851 ORTHO05D007137 2.3e-51 206.5 139 79.9
GSVIVG01019923001 Vitis vinifera HOM05D005851 ORTHO05D007137 2.3e-51 206.5 139 78.4
CDE04G1030 Ceratophyllum demersum HOM05D005851 ORTHO05D007137 5.1e-51 205.3 157 69.4
PGSC0003DMG400012515 Solanum tuberosum HOM05D005851 ORTHO05D007137 6.6e-51 204.9 144 75.7
Ciclev10024430m.g Citrus clementina HOM05D005851 ORTHO05D007137 8.6e-51 204.5 183 62.3
Potri.001G114800 Populus trichocarpa HOM05D005851 ORTHO05D007137 1.5e-50 203.8 137 78.8
Nitab4.5_0001816g0070 Nicotiana tabacum HOM05D005851 ORTHO05D007137 1.9e-50 203.4 160 70.0
Sabra01G0087800 Salix brachista HOM05D005851 ORTHO05D007137 1.9e-50 203.4 137 78.8
Nitab4.5_0006122g0020 Nicotiana tabacum HOM05D005851 ORTHO05D007137 2.5e-50 203.0 152 72.4
Cc08_g13500 Coffea canephora HOM05D005851 ORTHO05D007137 3.3e-50 202.6 150 71.3
CsaV3_3G003320 Cucumis sativus L. HOM05D005851 ORTHO05D007137 4.3e-50 202.2 137 77.4
Nitab4.5_0001265g0130 Nicotiana tabacum HOM05D005851 ORTHO05D007137 4.3e-50 202.2 160 69.4
Nitab4.5_0000439g0090 Nicotiana tabacum HOM05D005851 ORTHO05D007137 5.6e-50 201.8 152 73.7
PGR042G2385 Punica granatum HOM05D005851 ORTHO05D007137 1.6e-49 200.3 163 67.5
EL10Ac5g12653 Beta vulgaris HOM05D005851 ORTHO05D007137 2.1e-49 199.9 154 69.5
CAN.G1394.24 Capsicum annuum HOM05D005851 ORTHO05D007137 2.1e-49 199.9 151 70.2
Sopen08g003540 Solanum pennellii HOM05D005851 ORTHO05D007137 2.8e-49 199.5 121 81.8
TPR.G19565 Trifolium pratense HOM05D005851 ORTHO05D007137 3.6e-49 199.1 129 76.7
Psat2g180400 Pisum sativum HOM05D005851 ORTHO05D007137 4.7e-49 198.7 129 76.7
Medtr5g011460 Medicago truncatula HOM05D005851 ORTHO05D007137 8.1e-49 198.0 150 68.7
arahy.Tifrunner.gnm1.ann1.KEJN3W Arachis hypogaea HOM05D005851 ORTHO05D007137 1.4e-48 197.2 111 82.9
Lj2g0003035 Lotus japonicus HOM05D005851 ORTHO05D007137 1.4e-48 197.2 142 71.8
CiPaw.11G145200 Carya illinoinensis HOM05D005851 ORTHO05D007137 3.1e-48 196.1 159 67.3
Glyma.01G213300 Glycine max HOM05D005851 ORTHO05D007137 4.0e-48 195.7 136 72.1
arahy.Tifrunner.gnm1.ann1.BUTP6K Arachis hypogaea HOM05D005851 ORTHO05D007137 5.2e-48 195.3 146 67.1
Phvul.002G151800 Phaseolus vulgaris HOM05D005851 ORTHO05D007137 8.9e-48 194.5 185 58.4
SalBow1G3546 Salvia bowleyana HOM05D005851 ORTHO05D007137 1.2e-47 194.1 137 70.8
MELO3C013999.2 Cucumis melo HOM05D005851 ORTHO05D007137 1.5e-47 193.7 152 71.1
ATR0810G218 Amborella trichopoda HOM05D005851 ORTHO05D007137 2.6e-47 193.0 143 69.9
CAN.G630.46 Capsicum annuum HOM05D005851 ORTHO05D007137 3.4e-47 192.6 120 80.8
AUR62010535 Chenopodium quinoa HOM05D005851 ORTHO05D007137 4.4e-47 192.2 141 71.6
THA.LOC104814025 Tarenaya hassleriana HOM05D005851 ORTHO05D007137 4.4e-47 192.2 166 62.7
CARHR229860 Cardamine hirsuta HOM05D005851 ORTHO05D007137 5.8e-47 191.8 171 58.5
AUR62017360 Chenopodium quinoa HOM05D005851 ORTHO05D007137 1.3e-46 190.7 141 70.9
BolC1t01669H Brassica oleracea HOM05D005851 ORTHO05D007137 1.7e-46 190.3 132 71.2
HPP92_025677 Vanilla planifolia HOM05D005851 ORTHO05D007137 2.2e-46 189.9 141 71.6
BcaC09g51070 Brassica carinata HOM05D005851 ORTHO05D007137 4.9e-46 188.7 132 70.5
BcaC09g51071 Brassica carinata HOM05D005851 ORTHO05D007137 4.9e-46 188.7 132 70.5
C01p17300 Brassica napus HOM05D005851 ORTHO05D007137 4.9e-46 188.7 132 70.5
FAN08G3582 Fragaria x ananassa HOM05D005851 ORTHO05D007137 4.9e-46 188.7 168 64.3
BcaNung01022 Brassica carinata HOM05D005851 ORTHO05D007137 1.4e-45 187.2 142 67.6
A01p14080 Brassica napus HOM05D005851 ORTHO05D007137 3.2e-45 186.0 132 69.7
BraA01t01356Z Brassica rapa HOM05D005851 ORTHO05D007137 3.2e-45 186.0 132 69.7
Thhalv10026321m.g Eutrema salsugineum HOM05D005851 ORTHO05D007137 5.4e-45 185.3 132 69.7
AT4G22830 Arabidopsis thaliana HOM05D005851 ORTHO05D007137 7.1e-45 184.9 158 60.8
Carub.0007s1844 Capsella rubella HOM05D005851 ORTHO05D007137 7.1e-45 184.9 132 69.7
Lalb_Chr16g0379871 Lupinus albus HOM05D005851 ORTHO05D007137 7.1e-45 184.9 96 87.5
Aa31LG6G4910 Aethionema arabicum HOM05D000943 ORTHO05D002475 9.2e-45 184.5 179 57.0
AL7G30690 Arabidopsis lyrata HOM05D005851 ORTHO05D007137 2.1e-44 183.3 134 70.9
Os04g0379400 Oryza sativa ssp. japonica HOM05D005851 ORTHO05D007137 7.8e-44 181.4 140 66.4
MSTRG.1924 Avicennia marina HOM05D005851 ORTHO05D007137 1.3e-43 180.6 143 66.4
Zm00001eb103020 Zea mays HOM05D005851 ORTHO05D007137 3.9e-43 179.1 105 79.0
Pp3c10_11850 Physcomitrium patens HOM05D005851 ORTHO05D007137 3.3e-42 176.0 145 64.1
Pp3c12_9510 Physcomitrium patens HOM05D005851 ORTHO05D007137 1.8e-40 170.2 160 57.5
Glyma.11G028600 Glycine max HOM05D005851 ORTHO05D007137 5.3e-40 168.7 115 73.9
SMO364G0744 Selaginella moellendorffii HOM05D005851 ORTHO05D007137 2.9e-38 162.9 104 70.2
CANSAT95G0001 Cannabis sativa HOM05D005851 ORTHO05D007137 3.8e-38 162.5 149 64.4
Ah.02g116130 Amaranthus hybridus HOM05D005851 ORTHO05D007137 1.4e-37 160.6 104 74.0
DCAR_000876 Daucus carota HOM05D005851 ORTHO05D007137 3.2e-37 159.5 117 69.2
Migut.E01010 Erythranthe guttata HOM05D005851 ORTHO05D007137 3.2e-37 159.5 125 66.4
Mapoly0066s0013 Marchantia polymorpha HOM05D005851 ORTHO05D007137 4.2e-37 159.1 143 58.0
Manes.02G031801 Manihot esculenta HOM05D005851 ORTHO05D007137 2.7e-36 156.4 122 68.0
Sed0022049 Sechium edule HOM05D005851 ORTHO05D007137 4.6e-36 155.6 131 64.9
COL.COLO4_23838 Corchorus olitorius HOM05D005851 ORTHO05D007137 1.9e-34 150.2 74 93.2
Nn1g01189 Nelumbo nucifera HOM05D005851 ORTHO05D007137 3.3e-34 149.4 156 60.3
FAN18G0436 Fragaria x ananassa HOM05D005851 ORTHO05D007137 4.3e-34 149.1 167 56.3
VMungo1215G2211 Vigna mungo HOM05D005851 ORTHO05D007137 9.6e-34 147.9 157 52.2
SEGI_29987 Sequoiadendron giganteum HOM05D005851 ORTHO05D007137 4.8e-33 145.6 118 62.7
Cre12.g555400 Chlamydomonas reinhardtii HOM05D005851 ORTHO05D007137 1.8e-32 143.7 159 49.7
MCO03G553 Micromonas commoda HOM05D005851 ORTHO05D007137 2.3e-27 126.7 105 54.3
PRCOL_00005435 Prasinoderma coloniale HOM05D005851 ORTHO05D007137 8.7e-27 124.8 138 48.6
PRCOL_00002729 Prasinoderma coloniale HOM05D005851 ORTHO05D007137 3.3e-26 122.9 127 52.8
MCO14G091 Micromonas commoda HOM05D005851 ORTHO05D007137 3.1e-24 116.3 130 45.4
Thecc.03G264400 Theobroma cacao HOM05D005851 ORTHO05D007137 9.0e-24 114.8 114 58.8
Hund14676 Selenicereus undatus HOM05D005851 ORTHO05D007137 1.2e-23 114.4 102 63.7
MCO14G294 Micromonas commoda HOM05D005851 ORTHO05D007137 2.0e-23 113.6 95 53.7
Lsat_1_v5_gn_6_10241 Lactuca sativa HOM05D005851 ORTHO05D007137 2.9e-22 109.8 85 72.9
PSO782G0540 Papaver somniferum HOM05D005851 ORTHO05D007137 1.1e-21 107.8 107 58.9
Dinv39057 Davidia involucrata HOM05D005851 ORTHO05D007137 7.1e-21 105.1 55 90.9
Lj2A204T50 Lonicera japonica HOM05D005851 ORTHO05D007137 1.2e-20 104.4 49 89.8
MD04G1076900 Malus domestica HOM05D005851 ORTHO05D007137 2.1e-20 103.6 53 90.6
Eucgr.E00492 Eucalyptus grandis HOM05D005851 ORTHO05D007137 2.7e-20 103.2 94 63.8
Ca_06681_v3 Cicer arietinum L. HOM05D000943 ORTHO05D002475 4.6e-20 102.4 91 54.9
ClCG00G000050 Citrullus lanatus HOM05D005851 ORTHO05D007137 6.0e-20 102.1 80 70.0
ClCG00G004660 Citrullus lanatus HOM05D005851 ORTHO05D007137 6.0e-20 102.1 80 70.0
ClCG00G005270 Citrullus lanatus HOM05D005851 ORTHO05D007137 6.0e-20 102.1 80 70.0
ClCG10G003300 Citrullus lanatus HOM05D005851 ORTHO05D007137 6.0e-20 102.1 80 70.0
unitig_699.g19746 Utricularia gibba HOM05D002021 ORTHO05D002077 5.6e-18 95.5 80 62.5
Nn4g26436 Nelumbo nucifera HOM05D005851 ORTHO05D007137 1.6e-17 94.0 53 81.1
PRCOL_00002728 Prasinoderma coloniale HOM05D005851 ORTHO05D049091 3.4e-15 86.3 143 37.8
Lj2C204G6 Lonicera japonica HOM05D005851 ORTHO05D007137 3.8e-14 82.8 107 53.3
CBR_g50783 Chara braunii HOM05D000019 ORTHO05D000002 1.4e-13 80.9 80 52.5
BolC3t15330H Brassica oleracea HOM05D005851 ORTHO05D007137 1.3e-11 74.3 41 80.5
Dinv39056 Davidia involucrata HOM05D005851 ORTHO05D007137 2.3e-11 73.6 106 50.0
COL.COLO4_23837 Corchorus olitorius HOM05D005851 ORTHO05D007137 2.4e-08 63.5 56 64.3
Aa31LG6G4700 Aethionema arabicum HOM05D000943 ORTHO05D002475 2.2e-06 57.0 40 70.0
Aqoxy5G03942 Aquilegia oxysepala HOM05D001344 ORTHO05D002590 2.2e-06 57.0 72 54.2
arahy.Tifrunner.gnm1.ann1.UAJL6I Arachis hypogaea HOM05D005851 ORTHO05D007137 3.8e-06 56.2 101 40.6
Cfa020517 Carpinus fangiana HOM05D005851 ORTHO05D007137 5.0e-06 55.8 89 51.7
arahy.Tifrunner.gnm1.ann1.54ECHP Arachis hypogaea HOM05D005851 ORTHO05D007137 6.5e-06 55.5 39 74.4
arahy.Tifrunner.gnm1.ann1.CS7A8V Arachis hypogaea HOM05D005851 ORTHO05D007137 6.5e-06 55.5 39 74.4
arahy.Tifrunner.gnm1.ann1.IPBJ4Y Arachis hypogaea HOM05D005851 ORTHO05D007137 6.5e-06 55.5 39 74.4
arahy.Tifrunner.gnm1.ann1.Q2BFW3 Arachis hypogaea HOM05D005851 ORTHO05D007137 6.5e-06 55.5 39 74.4
BcaC09g48268 Brassica carinata HOM05D002423 ORTHO05D007137 8.5e-06 55.1 69 49.3
C01p52310 Brassica napus HOM05D002423 ORTHO05D007137 8.5e-06 55.1 69 49.3


User provided reference genes

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