Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0019501 Camellia sinensis var. sinensis HOM05D003418 ORTHO05D004105 5.0e-143 511.1 270 100.0
Dinv11681 Davidia involucrata HOM05D003418 ORTHO05D004105 1.5e-38 164.1 137 70.1
Dinv17578 Davidia involucrata HOM05D003418 ORTHO05D004105 8.3e-37 158.3 138 66.7
CSS0043963 Camellia sinensis var. sinensis HOM05D003418 ORTHO05D004105 2.7e-35 153.3 130 69.2
Prupe.1G223700 Prunus persica HOM05D003418 ORTHO05D004105 5.9e-35 152.1 145 58.6
DCAR_024672 Daucus carota HOM05D003418 ORTHO05D004105 6.6e-34 148.7 130 64.6
Hma1.2p1_0065F.1_g035230 Hydrangea macrophylla HOM05D003418 ORTHO05D004105 1.5e-33 147.5 132 63.6
Hma1.2p1_0275F.1_g110610 Hydrangea macrophylla HOM05D003418 ORTHO05D004105 2.8e-32 143.3 130 62.3
TAR629G2062 Trochodendron aralioides HOM05D003418 ORTHO05D004105 6.2e-32 142.1 127 66.9
CiPaw.06G104400 Carya illinoinensis HOM05D003418 ORTHO05D004105 1.0e-31 141.4 140 59.3
Actinidia08059 Actinidia chinensis HOM05D003418 ORTHO05D004105 6.8e-31 138.7 138 60.9
MELO3C017764.2 Cucumis melo HOM05D003418 ORTHO05D004105 6.8e-31 138.7 135 56.3
Cc11_g17090 Coffea canephora HOM05D003418 ORTHO05D004105 8.9e-31 138.3 128 60.9
CsaV3_4G002780 Cucumis sativus L. HOM05D003418 ORTHO05D004105 1.5e-30 137.5 131 56.5
Haze_12439 Corylus avellana HOM05D003418 ORTHO05D004105 3.4e-30 136.3 134 60.4
CiPaw.05G107800 Carya illinoinensis HOM05D003418 ORTHO05D004105 4.4e-30 136.0 134 60.4
Lsat_1_v5_gn_3_30720 Lactuca sativa HOM05D000660 ORTHO05D000766 4.4e-30 136.0 128 59.4
Manes.13G009900 Manihot esculenta HOM05D003418 ORTHO05D004105 5.8e-30 135.6 137 57.7
ClCG07G015190 Citrullus lanatus HOM05D003418 ORTHO05D004105 7.5e-30 135.2 131 56.5
FAN12G4113 Fragaria x ananassa HOM05D003418 ORTHO05D004105 7.5e-30 135.2 135 56.3
FAN17G2596 Fragaria x ananassa HOM05D003418 ORTHO05D004105 1.7e-29 134.0 143 56.6
TWI18G0155 Tripterygium wilfordii HOM05D003418 ORTHO05D004105 1.7e-29 134.0 132 55.3
FAN07G2322 Fragaria x ananassa HOM05D003418 ORTHO05D004105 2.9e-29 133.3 136 55.9
CANSAT01G2188 Cannabis sativa HOM05D003418 ORTHO05D004105 3.7e-29 132.9 136 59.6
Actinidia09637 Actinidia chinensis HOM05D003418 ORTHO05D004105 4.9e-29 132.5 135 63.7
PGR119G0689 Punica granatum HOM05D003418 ORTHO05D004105 4.9e-29 132.5 138 56.5
Thecc.02G204700 Theobroma cacao HOM05D003418 ORTHO05D004105 8.3e-29 131.7 135 54.8
FvH4_4g23540 Fragaria vesca HOM05D003418 ORTHO05D004105 1.1e-28 131.3 136 55.9
Medtr3g084990 Medicago truncatula HOM05D003418 ORTHO05D004105 1.4e-28 131.0 139 55.4
RcHm_v2.0_Chr4g0429941 Rosa chinensis HOM05D003418 ORTHO05D004105 1.9e-28 130.6 146 54.1
Cpa.g.sc43.80 Carica papaya HOM05D003418 ORTHO05D004105 2.4e-28 130.2 148 52.7
Duzib268G0386 Durio zibethinus HOM05D003418 ORTHO05D004105 3.2e-28 129.8 135 53.3
Lsat_1_v5_gn_4_781 Lactuca sativa HOM05D003418 ORTHO05D004105 4.1e-28 129.4 128 60.2
TAR374G1678 Trochodendron aralioides HOM05D003418 ORTHO05D004105 4.1e-28 129.4 128 63.3
Potri.003G170300 Populus trichocarpa HOM05D003418 ORTHO05D004105 5.4e-28 129.0 136 57.4
TWI36G1005 Tripterygium wilfordii HOM05D003418 ORTHO05D004105 9.2e-28 128.3 126 54.8
Duzib251G0418 Durio zibethinus HOM05D003418 ORTHO05D004105 2.7e-27 126.7 138 53.6
Peaxi162Scf00518g00025 Petunia axillaris HOM05D003418 ORTHO05D004105 2.7e-27 126.7 137 64.2
Oeu056671.1 Olea europaea HOM05D003418 ORTHO05D004105 3.5e-27 126.3 126 57.1
MSTRG.8015 Avicennia marina HOM05D003418 ORTHO05D004105 7.8e-27 125.2 140 50.7
THA.LOC104807496 Tarenaya hassleriana HOM05D003418 ORTHO05D004105 7.8e-27 125.2 140 54.3
MD13G1121400 Malus domestica HOM05D003418 ORTHO05D004105 1.3e-26 124.4 139 52.5
Oeu049146.3 Olea europaea HOM05D003418 ORTHO05D004105 1.3e-26 124.4 132 53.8
Potri.001G058100 Populus trichocarpa HOM05D003418 ORTHO05D004105 1.3e-26 124.4 138 55.1
QL03p052131 Quercus lobata HOM05D003418 ORTHO05D004105 1.3e-26 124.4 136 53.7
PGSC0003DMG401021901 Solanum tuberosum HOM05D003418 ORTHO05D004105 1.3e-26 124.4 117 58.1
Nitab4.5_0000340g0030 Nicotiana tabacum HOM05D003418 ORTHO05D004105 1.7e-26 124.0 129 55.8
AL1G40690 Arabidopsis lyrata HOM05D003418 ORTHO05D004105 2.3e-26 123.6 127 55.1
SalBow2G0507 Salvia bowleyana HOM05D003418 ORTHO05D004105 2.3e-26 123.6 128 53.9
Sc11g0000380 Simmondsia chinensis HOM05D003418 ORTHO05D004105 2.3e-26 123.6 144 49.3
Migut.K00956 Erythranthe guttata HOM05D003418 ORTHO05D004105 3.0e-26 123.2 144 50.7
Duzib248G1492 Durio zibethinus HOM05D003418 ORTHO05D004105 3.9e-26 122.9 135 51.9
HanXRQChr05g0128721 Helianthus annuus HOM05D003418 ORTHO05D004105 3.9e-26 122.9 135 54.8
TPR.G17778 Trifolium pratense HOM05D003418 ORTHO05D004105 3.9e-26 122.9 141 52.5
Ciclev10032970m.g Citrus clementina HOM05D003418 ORTHO05D004105 5.0e-26 122.5 140 53.6
CsaV3_6G008230 Cucumis sativus L. HOM05D003418 ORTHO05D004105 5.0e-26 122.5 127 52.8
AT1G27290 Arabidopsis thaliana HOM05D003418 ORTHO05D004105 6.6e-26 122.1 129 54.3
Ca_16446_v3 Cicer arietinum L. HOM05D003418 ORTHO05D004105 6.6e-26 122.1 138 52.9
Ca_18018_v3 Cicer arietinum L. HOM05D003418 ORTHO05D004105 6.6e-26 122.1 129 55.0
MD16G1121700 Malus domestica HOM05D003418 ORTHO05D004105 6.6e-26 122.1 135 50.4
Manes.12G009300 Manihot esculenta HOM05D003418 ORTHO05D004105 8.6e-26 121.7 133 56.4
THA.LOC104825492 Tarenaya hassleriana HOM05D003418 ORTHO05D004105 8.6e-26 121.7 140 52.1
Hund25475 Selenicereus undatus HOM05D003418 ORTHO05D004105 1.1e-25 121.3 130 50.8
Sopen05g011160 Solanum pennellii HOM05D003418 ORTHO05D004105 1.1e-25 121.3 128 53.9
Gorai.005G165100 Gossypium raimondii HOM05D003418 ORTHO05D004105 1.5e-25 120.9 137 52.6
Nitab4.5_0000067g0190 Nicotiana tabacum HOM05D003418 ORTHO05D004105 1.5e-25 120.9 125 59.2
Gohir.A03G125000 Gossypium hirsutum HOM05D003418 ORTHO05D004105 1.9e-25 120.6 137 52.6
Solyc05g015710.3 Solanum lycopersicum HOM05D003418 ORTHO05D004105 1.9e-25 120.6 117 57.3
Aa31LG7G9910 Aethionema arabicum HOM05D003418 ORTHO05D004105 2.5e-25 120.2 121 53.7
Carub.0001s2582 Capsella rubella HOM05D003418 ORTHO05D004105 2.5e-25 120.2 132 52.3
unitig_22.g6403 Utricularia gibba HOM05D003418 ORTHO05D003127 3.3e-25 119.8 128 48.4
BcaB03g14004 Brassica carinata HOM05D003418 ORTHO05D004105 4.3e-25 119.4 133 54.1
Phvul.001G263300 Phaseolus vulgaris HOM05D003418 ORTHO05D004105 4.3e-25 119.4 127 52.0
THA.LOC104807144 Tarenaya hassleriana HOM05D003418 ORTHO05D004105 4.3e-25 119.4 138 52.2
THA.LOC104809188 Tarenaya hassleriana HOM05D003418 ORTHO05D004105 4.3e-25 119.4 138 52.2
THA.LOC104822793 Tarenaya hassleriana HOM05D003418 ORTHO05D004105 4.3e-25 119.4 138 52.2
HanXRQChr06g0174711 Helianthus annuus HOM05D003418 ORTHO05D004105 5.6e-25 119.0 134 53.7
MELO3C022314.2 Cucumis melo HOM05D003418 ORTHO05D004105 9.5e-25 118.2 136 48.5
MSTRG.492 Avicennia marina HOM05D003418 ORTHO05D004105 1.2e-24 117.9 133 51.9
Nitab4.5_0005872g0010 Nicotiana tabacum HOM05D003418 ORTHO05D004105 1.6e-24 117.5 131 53.4
Gohir.D12G153300 Gossypium hirsutum HOM05D003418 ORTHO05D004105 2.1e-24 117.1 130 50.8
Oeu004464.1 Olea europaea HOM05D003418 ORTHO05D004105 2.1e-24 117.1 128 54.7
Psat5g098080 Pisum sativum HOM05D003418 ORTHO05D004105 2.1e-24 117.1 129 55.0
unitig_8.g3133 Utricularia gibba HOM05D003418 ORTHO05D004105 2.1e-24 117.1 118 53.4
Gohir.A12G149400 Gossypium hirsutum HOM05D003418 ORTHO05D004105 2.8e-24 116.7 130 50.8
Gorai.008G165800 Gossypium raimondii HOM05D003418 ORTHO05D004105 2.8e-24 116.7 130 50.8
Lj6g0011251 Lotus japonicus HOM05D003418 ORTHO05D004105 2.8e-24 116.7 126 52.4
Sabra01G0041900 Salix brachista HOM05D003418 ORTHO05D004105 2.8e-24 116.7 149 49.0
Glyma.11G252200 Glycine max HOM05D003418 ORTHO05D004105 3.6e-24 116.3 126 52.4
Glyma.18G004900 Glycine max HOM05D003418 ORTHO05D004105 3.6e-24 116.3 133 54.1
C07p17920 Brassica napus HOM05D003418 ORTHO05D004105 6.2e-24 115.5 136 52.9
BraA07t28984Z Brassica rapa HOM05D003418 ORTHO05D004105 6.2e-24 115.5 135 52.6
Psat7g077520 Pisum sativum HOM05D003418 ORTHO05D004105 6.2e-24 115.5 129 52.7
A07p11990 Brassica napus HOM05D003418 ORTHO05D004105 1.1e-23 114.8 135 52.6
CAN.G7.14 Capsicum annuum HOM05D003418 ORTHO05D004105 1.1e-23 114.8 128 54.7
SGA_v2.0_scaffold87G27173 Striga asiatica HOM05D003418 ORTHO05D004105 1.1e-23 114.8 125 49.6
Thhalv10009048m.g Eutrema salsugineum HOM05D003418 ORTHO05D004105 1.4e-23 114.4 130 52.3
CARHR026860 Cardamine hirsuta HOM05D003418 ORTHO05D004105 1.8e-23 114.0 124 50.0
Gohir.D02G147400 Gossypium hirsutum HOM05D003418 ORTHO05D004105 1.8e-23 114.0 137 50.4
PGSC0003DMG400013209 Solanum tuberosum HOM05D003418 ORTHO05D004105 3.1e-23 113.2 131 55.0
BolC7t42298H Brassica oleracea HOM05D003418 ORTHO05D004105 5.2e-23 112.5 130 51.5
Nn3g16424 Nelumbo nucifera HOM05D003418 ORTHO05D004105 5.2e-23 112.5 130 55.4
Nn4g22281 Nelumbo nucifera HOM05D003418 ORTHO05D004105 5.2e-23 112.5 129 53.5
C05p25990 Brassica napus HOM05D003418 ORTHO05D004105 6.8e-23 112.1 135 46.7
Gohir.A01G154140 Gossypium hirsutum HOM05D003418 ORTHO05D004105 6.8e-23 112.1 171 39.2
BcaB03g12071 Brassica carinata HOM05D003418 ORTHO05D004105 8.9e-23 111.7 135 49.6
SalBow8G1362 Salvia bowleyana HOM05D003418 ORTHO05D004105 1.2e-22 111.3 113 55.8
Atru.chr11.2346 Acer truncatum HOM05D003418 ORTHO05D004105 1.5e-22 110.9 146 45.9
A08p26430 Brassica napus HOM05D003418 ORTHO05D004105 2.0e-22 110.5 138 46.4
EL10Ac6g13525 Beta vulgaris HOM05D003418 ORTHO05D004105 2.6e-22 110.2 151 45.7
BolC3t19656H Brassica oleracea HOM05D003418 ORTHO05D004105 2.6e-22 110.2 123 50.4
SGA_v2.0_scaffold391G50621 Striga asiatica HOM05D003418 ORTHO05D004105 2.6e-22 110.2 129 54.3
Lj4g0014081 Lotus japonicus HOM05D003418 ORTHO05D004105 3.4e-22 109.8 131 46.6
BraA08t34595Z Brassica rapa HOM05D003418 ORTHO05D004105 4.4e-22 109.4 138 45.7
Sed0008687 Sechium edule HOM05D003418 ORTHO05D004105 4.4e-22 109.4 133 50.4
Eucgr.H04620 Eucalyptus grandis HOM05D003418 ORTHO05D004105 5.8e-22 109.0 145 47.6
C03p73650 Brassica napus HOM05D003418 ORTHO05D004105 9.8e-22 108.2 123 49.6
Gorai.002G181900 Gossypium raimondii HOM05D003418 ORTHO05D004105 1.7e-21 107.5 130 44.6
PGR102G1973 Punica granatum HOM05D003418 ORTHO05D004105 1.7e-21 107.5 125 50.4
Sed0009671 Sechium edule HOM05D003418 ORTHO05D004105 2.2e-21 107.1 125 48.0
Sed0026789 Sechium edule HOM05D003418 ORTHO05D004105 4.9e-21 105.9 130 50.8
BcaC05g26544 Brassica carinata HOM05D003418 ORTHO05D004105 6.4e-21 105.5 123 46.3
Phvul.L003346 Phaseolus vulgaris HOM05D003418 ORTHO05D004105 6.4e-21 105.5 128 51.6
arahy.Tifrunner.gnm1.ann1.R9UC9A Arachis hypogaea HOM05D003418 ORTHO05D004105 1.1e-20 104.8 131 51.9
arahy.Tifrunner.gnm1.ann1.V484X6 Arachis hypogaea HOM05D003418 ORTHO05D004105 1.1e-20 104.8 133 51.1
Gohir.D01G146200 Gossypium hirsutum HOM05D003418 ORTHO05D004105 1.4e-20 104.4 130 43.8
Nitab4.5_0012747g0020 Nicotiana tabacum HOM05D003418 ORTHO05D004105 1.4e-20 104.4 94 64.9
Rhsim12G0093300 Rhododendron simsii HOM05D003418 ORTHO05D004105 1.9e-20 104.0 130 51.5
Glyma.05G148600 Glycine max HOM05D003418 ORTHO05D004105 7.1e-20 102.1 128 49.2
VMungo0251G0083 Vigna mungo HOM05D003418 ORTHO05D004105 2.1e-19 100.5 124 51.6
MBI11_g22683_MAGBIO Magnolia biondii HOM05D003418 ORTHO05D004105 3.5e-19 99.8 147 46.9
TPR.G17100 Trifolium pratense HOM05D003418 ORTHO05D004105 3.5e-19 99.8 118 50.0
Gorai.009G332100 Gossypium raimondii HOM05D003418 ORTHO05D004105 1.7e-18 97.4 121 45.5
Medtr8g097040 Medicago truncatula HOM05D003418 ORTHO05D004105 2.3e-18 97.1 131 48.1
Gohir.D05G311100 Gossypium hirsutum HOM05D003418 ORTHO05D004105 5.1e-18 95.9 121 44.6
Gohir.A05G310300 Gossypium hirsutum HOM05D003418 ORTHO05D004105 1.1e-17 94.7 119 46.2
Ah.02g130820 Amaranthus hybridus HOM05D000660 ORTHO05D000766 2.1e-16 90.5 131 51.9
CDE06G2031 Ceratophyllum demersum HOM05D003325 ORTHO05D003852 3.6e-16 89.7 150 42.0
Actinidia30634 Actinidia chinensis HOM05D003418 ORTHO05D004105 4.7e-16 89.4 63 76.2
MBI07_g11273_MAGBIO Magnolia biondii HOM05D003418 ORTHO05D004105 2.3e-15 87.0 116 46.6
CDE02G2290 Ceratophyllum demersum HOM05D003418 ORTHO05D004105 3.1e-15 86.7 141 41.8
CiPaw.03G057000 Carya illinoinensis HOM05D003418 ORTHO05D004105 6.8e-15 85.5 129 45.7
Aqoxy3G01580 Aquilegia oxysepala HOM05D003418 ORTHO05D004105 2.6e-14 83.6 128 45.3
Rhsim12G0024500 Rhododendron simsii HOM05D003418 ORTHO05D004105 2.6e-14 83.6 88 58.0
unitig_26.g10403 Utricularia gibba HOM05D003418 ORTHO05D004105 7.6e-14 82.0 127 38.6
Cfa007215 Carpinus fangiana HOM05D003418 ORTHO05D004105 9.9e-14 81.6 128 44.5
PSO017G5034 Papaver somniferum HOM05D003418 ORTHO05D004105 1.3e-13 81.3 150 42.0
PSO017G5305 Papaver somniferum HOM05D003418 ORTHO05D004105 1.7e-13 80.9 125 44.8
PSO478G1430 Papaver somniferum HOM05D003418 ORTHO05D004105 2.2e-13 80.5 150 42.0
Rhsim08G0042100 Rhododendron simsii HOM05D003418 ORTHO05D004105 2.2e-13 80.5 119 46.2
Ah.03g136010 Amaranthus hybridus HOM05D003418 ORTHO05D004105 2.9e-13 80.1 83 56.6
Lalb_Chr23g0278191 Lupinus albus HOM05D003418 ORTHO05D004105 2.9e-13 80.1 99 52.5
Sopen04g016940 Solanum pennellii HOM05D003418 ORTHO05D004105 3.7e-13 79.7 73 58.9
PSO478G5262 Papaver somniferum HOM05D003418 ORTHO05D004105 6.4e-13 79.0 125 44.8
Medtr5g078400 Medicago truncatula HOM05D003418 ORTHO05D004105 1.1e-12 78.2 77 61.0
ATR0561G224 Amborella trichopoda HOM05D003418 ORTHO05D004105 1.4e-12 77.8 136 43.4
Haze_14888 Corylus avellana HOM05D003418 ORTHO05D004105 1.9e-12 77.4 128 43.0
unitig_749.g13308 Utricularia gibba HOM05D003418 ORTHO05D004105 3.2e-12 76.6 129 42.6
ClCG06G002160 Citrullus lanatus HOM05D003418 ORTHO05D004105 5.4e-12 75.9 80 56.2
CANSAT64G1003 Cannabis sativa HOM05D003418 ORTHO05D004105 9.2e-12 75.1 139 43.2
Lalb_Chr07g0187041 Lupinus albus HOM05D003418 ORTHO05D004105 1.2e-11 74.7 127 41.7
Lalb_Chr12g0206031 Lupinus albus HOM05D003418 ORTHO05D004105 1.6e-11 74.3 127 40.2
Ciclev10017602m.g Citrus clementina HOM05D003418 ORTHO05D004105 1.3e-10 71.2 109 43.1
AUR62017773 Chenopodium quinoa HOM05D003418 ORTHO05D004105 1.7e-10 70.9 124 44.4
SalBow7G0626 Salvia bowleyana HOM05D003418 ORTHO05D004105 1.7e-10 70.9 128 41.4
Aqoxy5G03322 Aquilegia oxysepala HOM05D003418 ORTHO05D004105 3.0e-10 70.1 108 48.1
Cc07_g00970 Coffea canephora HOM05D003418 ORTHO05D004105 6.6e-10 68.9 124 43.5
Glyma.19G093400 Glycine max HOM05D003418 ORTHO05D004105 8.6e-10 68.6 126 41.3
Actinidia04435 Actinidia chinensis HOM05D003418 ORTHO05D004105 3.3e-09 66.6 117 41.0
Zm00001eb102460 Zea mays HOM05D003418 ORTHO05D004105 5.6e-09 65.9 136 37.5
EL10Ac6g15425 Beta vulgaris HOM05D000704 ORTHO05D000526 7.3e-09 65.5 128 41.4
Migut.E00007 Erythranthe guttata HOM05D003418 ORTHO05D004105 7.3e-09 65.5 141 34.8
SalBow4G0150 Salvia bowleyana HOM05D003418 ORTHO05D004105 7.3e-09 65.5 114 40.4
SalBow4G1936 Salvia bowleyana HOM05D003418 ORTHO05D004105 9.6e-09 65.1 114 39.5
Eucgr.I01636 Eucalyptus grandis HOM05D003418 ORTHO05D004105 1.2e-08 64.7 121 38.0
HPP92_025259 Vanilla planifolia HOM05D003418 ORTHO05D004105 1.2e-08 64.7 110 39.1
TPR.G29062 Trifolium pratense HOM05D003418 ORTHO05D004105 2.8e-08 63.5 119 39.5
Lj1g0017862 Lotus japonicus HOM05D003418 ORTHO05D004105 6.2e-08 62.4 121 37.2
Medtr7g028805 Medicago truncatula HOM05D003418 ORTHO05D004105 1.4e-07 61.2 121 37.2
SGA_v2.0_scaffold253G45188 Striga asiatica HOM05D003418 ORTHO05D004105 1.4e-07 61.2 115 37.4
Thecc.04G039200 Theobroma cacao HOM05D003418 ORTHO05D004105 4.0e-07 59.7 124 38.7
SHI17980 Sapria himalayana HOM05D005577 ORTHO05D006941 5.2e-07 59.3 83 47.0
Zm00001eb364310 Zea mays HOM05D003418 ORTHO05D011080 5.2e-07 59.3 89 47.2
Cpa.g.sc171.2 Carica papaya HOM05D003418 ORTHO05D004105 6.8e-07 58.9 123 41.5
Hma1.2p1_1057F.1_g252730 Hydrangea macrophylla HOM05D003418 ORTHO05D004105 6.8e-07 58.9 62 53.2
Os09g0507400 Oryza sativa ssp. japonica HOM05D003418 ORTHO05D004105 6.8e-07 58.9 108 37.0
Lsat_1_v5_gn_2_93281 Lactuca sativa HOM05D003418 ORTHO05D004105 8.9e-07 58.5 117 37.6


User provided reference genes

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