Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0019474 Camellia sinensis var. sinensis HOM05D004631 ORTHO05D005223 3.0e-134 481.9 249 100.0
RhsimUnG0241300 Rhododendron simsii HOM05D004631 ORTHO05D005223 1.9e-104 382.9 249 79.9
vmacro05924 Vaccinium macrocarpon HOM05D004631 ORTHO05D005223 2.3e-102 375.9 249 77.5
Rhsim08G0046200 Rhododendron simsii HOM05D004631 ORTHO05D005223 4.4e-101 371.7 245 77.6
CSS0019664 Camellia sinensis var. sinensis HOM05D004631 ORTHO05D005223 6.4e-100 367.9 251 76.9
Lj7A605T75 Lonicera japonica HOM05D004631 ORTHO05D005223 1.8e-94 349.7 250 74.0
vmacro18314 Vaccinium macrocarpon HOM05D004631 ORTHO05D005223 2.3e-94 349.4 224 78.6
Hma1.2p1_0227F.1_g095910 Hydrangea macrophylla HOM05D004631 ORTHO05D005223 1.7e-92 343.2 252 72.2
Hma1.2p1_0279F.1_g112270 Hydrangea macrophylla HOM05D004631 ORTHO05D005223 6.4e-92 341.3 249 71.9
Actinidia05943 Actinidia chinensis HOM05D000918 ORTHO05D000791 4.6e-90 335.1 226 79.6
Cc07_g00410 Coffea canephora HOM05D004631 ORTHO05D005223 1.3e-89 333.6 249 67.9
MSTRG.24067 Avicennia marina HOM05D004631 ORTHO05D005223 3.1e-86 322.4 250 66.8
Prupe.3G299600 Prunus persica HOM05D004631 ORTHO05D005223 2.6e-85 319.3 247 66.0
Duzib147G1024 Durio zibethinus HOM05D004631 ORTHO05D005223 4.4e-85 318.5 246 67.9
PGSC0003DMG400020270 Solanum tuberosum HOM05D004631 ORTHO05D005223 2.2e-84 316.2 252 64.7
Thecc.04G027600 Theobroma cacao HOM05D004631 ORTHO05D005223 2.2e-84 316.2 251 66.1
Solyc02g093820.4 Solanum lycopersicum HOM05D004631 ORTHO05D005223 3.7e-84 315.5 252 63.9
SGA_v2.0_scaffold18G08240 Striga asiatica HOM05D004631 ORTHO05D005223 3.7e-84 315.5 252 63.9
Sopen02g038460 Solanum pennellii HOM05D004631 ORTHO05D005223 4.9e-84 315.1 252 63.9
FAN02G2863 Fragaria x ananassa HOM05D004631 ORTHO05D005223 6.4e-84 314.7 253 66.0
CAN.G473.59 Capsicum annuum HOM05D004631 ORTHO05D005223 1.4e-83 313.5 253 65.6
Duzib264G0826 Durio zibethinus HOM05D004631 ORTHO05D005223 3.2e-83 312.4 252 64.3
Migut.H00060 Erythranthe guttata HOM05D004631 ORTHO05D005223 3.2e-83 312.4 251 65.7
FvH4_6g52650 Fragaria vesca HOM05D004631 ORTHO05D005223 9.2e-83 310.8 253 65.2
TWI59G0755 Tripterygium wilfordii HOM05D004631 ORTHO05D005223 1.2e-82 310.5 247 63.6
Haze_14815 Corylus avellana HOM05D004631 ORTHO05D005223 1.6e-82 310.1 267 62.9
AUR62011927 Chenopodium quinoa HOM05D004631 ORTHO05D005223 2.1e-82 309.7 253 65.6
CANSAT64G0886 Cannabis sativa HOM05D004631 ORTHO05D005223 3.5e-82 308.9 248 64.9
RcHm_v2.0_Chr2g0174181 Rosa chinensis HOM05D004631 ORTHO05D005223 4.6e-82 308.5 244 65.6
AUR62032242 Chenopodium quinoa HOM05D004631 ORTHO05D005223 6.0e-82 308.1 253 65.2
CiPaw.03G050500 Carya illinoinensis HOM05D004631 ORTHO05D005223 1.0e-81 307.4 249 66.7
Gohir.D10G085100 Gossypium hirsutum HOM05D004631 ORTHO05D005223 1.3e-81 307.0 249 64.7
FAN05G1873 Fragaria x ananassa HOM05D004631 ORTHO05D005223 2.3e-81 306.2 254 65.0
QL02p072911 Quercus lobata HOM05D004631 ORTHO05D005223 2.3e-81 306.2 249 64.7
HanXRQChr17g0549531 Helianthus annuus HOM05D004631 ORTHO05D005223 3.9e-81 305.4 233 67.8
Cfa007277 Carpinus fangiana HOM05D004631 ORTHO05D005223 5.1e-81 305.1 249 65.5
FAN14G1903 Fragaria x ananassa HOM05D004631 ORTHO05D005223 6.6e-81 304.7 254 64.6
Nn4g22438 Nelumbo nucifera HOM05D004631 ORTHO05D005223 8.6e-81 304.3 256 63.3
Gorai.011G093000 Gossypium raimondii HOM05D004631 ORTHO05D005223 1.5e-80 303.5 250 64.0
FAN09G3073 Fragaria x ananassa HOM05D004631 ORTHO05D005223 2.5e-80 302.8 254 63.8
Gohir.A10G160500 Gossypium hirsutum HOM05D004631 ORTHO05D005223 2.5e-80 302.8 250 64.0
MD09G1017300 Malus domestica HOM05D004631 ORTHO05D005223 2.5e-80 302.8 242 64.0
PGR142G2057 Punica granatum HOM05D004631 ORTHO05D005223 3.3e-80 302.4 249 67.1
GSVIVG01001850001 Vitis vinifera HOM05D004631 ORTHO05D005223 3.3e-80 302.4 233 68.7
DCAR_021756 Daucus carota HOM05D004631 ORTHO05D005223 5.6e-80 301.6 237 66.2
COL.COLO4_29276 Corchorus olitorius HOM05D004631 ORTHO05D005223 7.3e-80 301.2 223 69.1
CSS0005098 Camellia sinensis var. sinensis HOM05D004631 ORTHO05D005223 3.6e-79 298.9 196 78.1
TAR371G0552 Trochodendron aralioides HOM05D004631 ORTHO05D005223 4.7e-79 298.5 252 61.9
Ciclev10016175m.g Citrus clementina HOM05D004631 ORTHO05D005223 6.2e-79 298.1 279 59.1
MD17G1018100 Malus domestica HOM05D004631 ORTHO05D005223 6.2e-79 298.1 242 64.9
Oeu050430.2 Olea europaea HOM05D004631 ORTHO05D005223 1.1e-78 297.4 284 58.8
CiPaw.04G033100 Carya illinoinensis HOM05D004631 ORTHO05D005223 1.8e-78 296.6 254 61.4
EL10Ac5g10455 Beta vulgaris HOM05D004631 ORTHO05D005223 5.2e-78 295.0 254 63.4
TAR629G3282 Trochodendron aralioides HOM05D004631 ORTHO05D005223 8.9e-78 294.3 252 63.9
MSTRG.3110 Avicennia marina HOM05D004631 ORTHO05D005223 3.4e-77 292.4 246 62.2
Eucgr.I01692 Eucalyptus grandis HOM05D004631 ORTHO05D005223 3.4e-77 292.4 255 62.4
Peaxi162Scf00420g00342 Petunia axillaris HOM05D004631 ORTHO05D005223 3.4e-77 292.4 250 62.0
Peaxi162Scf00420g00345 Petunia axillaris HOM05D004631 ORTHO05D005223 5.8e-77 291.6 250 62.0
Lsat_1_v5_gn_0_32720 Lactuca sativa HOM05D004631 ORTHO05D005223 7.6e-77 291.2 253 62.5
Sabra09G0043700 Salix brachista HOM05D004631 ORTHO05D005223 2.9e-76 289.3 246 60.6
PSO063G4908 Papaver somniferum HOM05D004631 ORTHO05D005223 3.8e-76 288.9 241 60.6
PSO782G2324 Papaver somniferum HOM05D004631 ORTHO05D005223 1.4e-75 287.0 241 60.2
Gorai.012G089800 Gossypium raimondii HOM05D004631 ORTHO05D005223 1.9e-75 286.6 250 60.8
Potri.001G264500 Populus trichocarpa HOM05D004631 ORTHO05D005223 1.9e-75 286.6 246 61.4
TWI23G0469 Tripterygium wilfordii HOM05D004631 ORTHO05D005223 2.4e-75 286.2 247 60.3
DCAR_011290 Daucus carota HOM05D004631 ORTHO05D005223 4.1e-75 285.4 234 64.5
SalBow1G3920 Salvia bowleyana HOM05D004631 ORTHO05D005223 4.1e-75 285.4 280 56.8
Sed0025843 Sechium edule HOM05D004631 ORTHO05D005223 4.1e-75 285.4 246 63.0
Glyma.16G063100 Glycine max HOM05D004631 ORTHO05D005223 7.1e-75 284.6 254 61.0
CsaV3_6G001200 Cucumis sativus L. HOM05D004631 ORTHO05D005223 9.2e-75 284.3 234 63.7
Dinv25693 Davidia involucrata HOM05D004631 ORTHO05D005223 9.2e-75 284.3 202 72.3
ECA246G0472 Erigeron canadensis HOM05D004631 ORTHO05D005223 1.2e-74 283.9 243 63.4
Gohir.D04G079800 Gossypium hirsutum HOM05D004631 ORTHO05D005223 1.6e-74 283.5 250 60.4
Manes.15G156400 Manihot esculenta HOM05D004631 ORTHO05D005223 1.6e-74 283.5 231 62.3
SalBow1G0328 Salvia bowleyana HOM05D004631 ORTHO05D005223 2.7e-74 282.7 280 56.4
ClCG11G006850 Citrullus lanatus HOM05D004631 ORTHO05D005223 6.0e-74 281.6 273 57.1
Sabra16G0162600 Salix brachista HOM05D004631 ORTHO05D005223 1.0e-73 280.8 241 58.9
Glyma.19G082400 Glycine max HOM05D004631 ORTHO05D005223 3.9e-73 278.9 252 60.7
Manes.07G089400 Manihot esculenta HOM05D004631 ORTHO05D005223 5.1e-73 278.5 231 62.3
Potri.009G059300 Populus trichocarpa HOM05D004631 ORTHO05D005223 6.6e-73 278.1 246 58.5
Lalb_Chr14g0363051 Lupinus albus HOM05D004631 ORTHO05D005223 8.7e-73 277.7 246 60.2
Ah.11g049900 Amaranthus hybridus HOM05D000470 ORTHO05D000348 4.3e-72 275.4 229 63.3
MBI05_g32279_MAGBIO Magnolia biondii HOM05D004631 ORTHO05D005223 5.6e-72 275.0 227 62.1
Aqoxy5G03556 Aquilegia oxysepala HOM05D004631 ORTHO05D005223 9.6e-72 274.2 239 59.8
Lsat_1_v5_gn_4_185741 Lactuca sativa HOM05D004631 ORTHO05D005223 1.2e-71 273.9 252 62.3
Atru.chr6.2487 Acer truncatum HOM05D004631 ORTHO05D005223 2.8e-71 272.7 246 59.3
AT3G27310 Arabidopsis thaliana HOM05D004631 ORTHO05D005223 3.6e-71 272.3 254 59.1
Carub.0005s0558 Capsella rubella HOM05D004631 ORTHO05D005223 3.6e-71 272.3 255 58.8
Gohir.A05G341700 Gossypium hirsutum HOM05D004631 ORTHO05D005223 3.6e-71 272.3 227 63.0
HanXRQChr15g0487081 Helianthus annuus HOM05D004631 ORTHO05D005223 3.6e-71 272.3 254 63.0
Sed0000329 Sechium edule HOM05D004631 ORTHO05D005223 8.1e-71 271.2 250 59.2
arahy.Tifrunner.gnm1.ann1.5W0L45 Arachis hypogaea HOM05D004631 ORTHO05D005223 1.1e-70 270.8 251 59.4
Cpa.g.c34704 Carica papaya HOM05D004631 ORTHO05D005223 1.1e-70 270.8 224 63.4
Thhalv10004822m.g Eutrema salsugineum HOM05D004631 ORTHO05D005223 2.4e-70 269.6 253 57.7
arahy.Tifrunner.gnm1.ann1.NS464T Arachis hypogaea HOM05D004631 ORTHO05D005223 3.1e-70 269.2 251 59.0
CARHR148590 Cardamine hirsuta HOM05D004631 ORTHO05D005223 3.1e-70 269.2 253 58.1
unitig_62.g23368 Utricularia gibba HOM05D004631 ORTHO05D005223 3.1e-70 269.2 228 61.4
Ca_04405_v3 Cicer arietinum L. HOM05D004631 ORTHO05D005223 5.2e-70 268.5 254 59.1
Sc03g0007030 Simmondsia chinensis HOM05D004631 ORTHO05D005223 3.4e-69 265.8 191 70.2
Lj2g0014181 Lotus japonicus HOM05D004631 ORTHO05D005223 7.6e-69 264.6 248 59.3
VMungo1383G3654 Vigna mungo HOM05D004631 ORTHO05D005223 1.3e-68 263.8 232 59.9
TPR.G29003 Trifolium pratense HOM05D004631 ORTHO05D005223 8.4e-68 261.2 245 57.1
Dinv33383 Davidia involucrata HOM05D004631 ORTHO05D005223 1.4e-67 260.4 164 81.1
BcaC06g31006 Brassica carinata HOM05D004631 ORTHO05D005223 2.4e-67 259.6 255 55.7
Phvul.008G148800 Phaseolus vulgaris HOM05D004631 ORTHO05D005223 2.4e-67 259.6 249 58.6
ECA232G0338 Erigeron canadensis HOM05D004631 ORTHO05D005223 3.2e-67 259.2 255 58.8
Aa31LG2G5340 Aethionema arabicum HOM05D004631 ORTHO05D005223 4.2e-67 258.8 268 54.9
AL5G16540 Arabidopsis lyrata HOM05D004631 ORTHO05D005223 3.5e-66 255.8 230 60.4
BcaC06g33833 Brassica carinata HOM05D004631 ORTHO05D005223 6.0e-66 255.0 261 53.6
BolC7t44152H Brassica oleracea HOM05D004631 ORTHO05D005223 6.0e-66 255.0 261 53.6
Psat1g084240 Pisum sativum HOM05D004631 ORTHO05D005223 1.3e-65 253.8 245 55.9
C07p36360 Brassica napus HOM05D004631 ORTHO05D005223 3.9e-65 252.3 258 53.5
Sp2g16470 Schrenkiella parvula HOM05D004631 ORTHO05D005223 5.6e-64 248.4 253 53.4
A06p41300 Brassica napus HOM05D004631 ORTHO05D005223 9.6e-64 247.7 258 52.3
BraA06t27055Z Brassica rapa HOM05D004631 ORTHO05D005223 9.6e-64 247.7 258 52.3
Nitab4.5_0001863g0070 Nicotiana tabacum HOM05D004631 ORTHO05D005223 9.0e-62 241.1 223 58.7
ATR0824G076 Amborella trichopoda HOM05D004631 ORTHO05D005223 1.7e-60 236.9 232 56.5
Lj1g0026695 Lotus japonicus HOM05D004631 ORTHO05D005223 4.9e-60 235.3 256 50.8
Oeu058758.2 Olea europaea HOM05D004631 ORTHO05D005223 4.2e-59 232.3 163 72.4
HPP92_028037 Vanilla planifolia HOM05D004631 ORTHO05D005223 1.2e-58 230.7 235 53.6
MELO3C008218.2 Cucumis melo HOM05D004631 ORTHO05D005223 1.8e-57 226.9 188 63.8
Medtr6g023080 Medicago truncatula HOM05D004631 ORTHO05D005223 6.7e-57 224.9 205 59.0
Mapoly0078s0021 Marchantia polymorpha HOM05D004631 ORTHO05D005223 1.6e-47 193.7 234 44.4
TPR.G2332 Trifolium pratense HOM05D004631 ORTHO05D005223 2.1e-47 193.4 165 60.6
Medtr6g022770 Medicago truncatula HOM05D004631 ORTHO05D005223 1.4e-46 190.7 173 57.2
Zm00001eb425170 Zea mays HOM05D004631 ORTHO05D005223 2.4e-46 189.9 233 46.8
Ciclev10003548m.g Citrus clementina HOM05D004631 ORTHO05D005223 1.2e-45 187.6 245 49.4
Os04g0485200 Oryza sativa ssp. japonica HOM05D004631 ORTHO05D005223 2.0e-45 186.8 228 44.7
Medtr0531s0010 Medicago truncatula HOM05D004631 ORTHO05D005223 5.8e-45 185.3 168 59.5
Zm00001eb079230 Zea mays HOM05D004631 ORTHO05D005223 5.8e-45 185.3 235 45.5
Actinidia35792 Actinidia chinensis HOM05D004631 ORTHO05D005223 8.4e-44 181.4 111 85.6
Prupe.8G176800 Prunus persica HOM05D004631 ORTHO05D005223 2.1e-42 176.8 122 70.5
MD10G1138200 Malus domestica HOM05D004631 ORTHO05D005223 4.6e-42 175.6 124 67.7
Nitab4.5_0008718g0050 Nicotiana tabacum HOM05D004631 ORTHO05D005223 3.1e-38 162.9 202 52.5
SMO199G0125 Selaginella moellendorffii HOM05D004631 ORTHO05D005223 2.6e-37 159.8 230 40.9
Potri.001G337533 Populus trichocarpa HOM05D004631 ORTHO05D005223 2.2e-36 156.8 204 48.0
Pp3c7_140 Physcomitrium patens HOM05D004631 ORTHO05D005223 7.2e-35 151.8 242 38.4
Eucgr.L03061 Eucalyptus grandis HOM05D004631 ORTHO05D005223 1.0e-28 131.3 82 72.0
FAN27G0193 Fragaria x ananassa HOM05D004631 ORTHO05D005223 4.7e-26 122.5 120 54.2
FAN24G1590 Fragaria x ananassa HOM05D004631 ORTHO05D005223 7.9e-26 121.7 120 54.2
FvH4_2g09210 Fragaria vesca HOM05D004631 ORTHO05D005223 2.3e-25 120.2 119 53.8
BcaC04g23906 Brassica carinata HOM05D004631 ORTHO05D005223 3.0e-25 119.8 169 46.7
Medtr4g103350 Medicago truncatula HOM05D004631 ORTHO05D005223 5.1e-25 119.0 170 43.5
HPP92_027613 Vanilla planifolia HOM05D004631 ORTHO05D005223 6.7e-25 118.6 115 52.2
A09p03370 Brassica napus HOM05D004631 ORTHO05D005223 1.5e-24 117.5 118 51.7
BraA09t35975Z Brassica rapa HOM05D004631 ORTHO05D005223 1.5e-24 117.5 118 51.7
BraA09t35976Z Brassica rapa HOM05D004631 ORTHO05D005223 1.5e-24 117.5 118 51.7
RcHm_v2.0_Chr6g0265061 Rosa chinensis HOM05D004631 ORTHO05D005223 4.4e-16 89.4 116 51.7
SMO361G0265 Selaginella moellendorffii HOM05D022709 ORTHO05D005223 4.4e-16 89.4 246 30.9
SMO361G0508 Selaginella moellendorffii HOM05D022709 ORTHO05D005223 1.1e-14 84.7 191 35.1
Zm00001eb055680 Zea mays HOM05D004631 ORTHO05D005223 9.1e-14 81.6 101 45.5
BcaB04g19435 Brassica carinata HOM05D002252 ORTHO05D002451 2.9e-12 76.6 101 44.6
Actinidia36166 Actinidia chinensis HOM05D004631 ORTHO05D005223 5.0e-12 75.9 59 71.2
HPP92_027614 Vanilla planifolia HOM05D004631 ORTHO05D005223 4.7e-10 69.3 74 55.4
Sabra16G0218300 Salix brachista HOM05D004631 ORTHO05D005223 1.4e-09 67.8 44 72.7
Carub.0005s0060 Capsella rubella HOM05D006041 ORTHO05D007473 2.2e-07 60.5 132 31.1
SGA_v2.0_scaffold139G35400 Striga asiatica HOM05D006041 ORTHO05D007473 2.8e-07 60.1 127 35.4
AT2G01650 Arabidopsis thaliana HOM05D006041 ORTHO05D007473 4.8e-07 59.3 126 31.7
Lj4g0006027 Lotus japonicus HOM05D006041 ORTHO05D007473 4.8e-07 59.3 186 26.3
PGR142G4228 Punica granatum HOM05D006041 ORTHO05D007473 4.8e-07 59.3 171 28.7
MSTRG.2140 Avicennia marina HOM05D006041 ORTHO05D007473 6.3e-07 58.9 112 33.0
CANSAT01G0691 Cannabis sativa HOM05D006041 ORTHO05D007473 6.3e-07 58.9 146 29.5
unitig_27.g25310 Utricularia gibba HOM05D006041 ORTHO05D007473 6.3e-07 58.9 150 28.0
EL10Ac6g15713 Beta vulgaris HOM05D006041 ORTHO05D007473 8.2e-07 58.5 167 28.1
Cpa.g.c27573.2 Carica papaya HOM05D006041 ORTHO05D007473 8.2e-07 58.5 117 33.3
Phvul.002G319700 Phaseolus vulgaris HOM05D006041 ORTHO05D007473 8.2e-07 58.5 168 25.6
Thhalv10004151m.g Eutrema salsugineum HOM05D006041 ORTHO05D007473 1.4e-06 57.8 157 28.0
MELO3C005281.2 Cucumis melo HOM05D006041 ORTHO05D007473 1.8e-06 57.4 187 27.8
C09p03590 Brassica napus HOM05D004631 ORTHO05D005223 2.4e-06 57.0 35 74.3
Sed0013468 Sechium edule HOM05D006041 ORTHO05D007473 3.1e-06 56.6 137 33.6
BcaC06g34139 Brassica carinata HOM05D006041 ORTHO05D007473 4.1e-06 56.2 138 30.4
BolC7t43765H Brassica oleracea HOM05D006041 ORTHO05D007473 4.1e-06 56.2 138 30.4
AL5G10750 Arabidopsis lyrata HOM05D006041 ORTHO05D007473 5.3e-06 55.8 126 31.0
Cre10.g443650 Chlamydomonas reinhardtii HOM05D004631 ORTHO05D005223 5.3e-06 55.8 117 31.6
Glyma.05G235400 Glycine max HOM05D006041 ORTHO05D007473 5.3e-06 55.8 171 25.7
Nitab4.5_0009602g0010 Nicotiana tabacum HOM05D006041 ORTHO05D007473 5.3e-06 55.8 117 30.8
SalBow2G0340 Salvia bowleyana HOM05D006041 ORTHO05D007473 5.3e-06 55.8 158 28.5
Atru.chr11.510 Acer truncatum HOM05D006041 ORTHO05D007473 7.0e-06 55.5 129 29.5
arahy.Tifrunner.gnm1.ann1.BAL5EB Arachis hypogaea HOM05D006041 ORTHO05D007473 7.0e-06 55.5 151 26.5
C07p32270 Brassica napus HOM05D006041 ORTHO05D007473 7.0e-06 55.5 138 30.4
Nitab4.5_0000238g0060 Nicotiana tabacum HOM05D006041 ORTHO05D007473 7.0e-06 55.5 117 29.9
Oeu016281.1 Olea europaea HOM05D006041 ORTHO05D007473 7.0e-06 55.5 172 26.2
Peaxi162Scf00655g00023 Petunia axillaris HOM05D006041 ORTHO05D007473 7.0e-06 55.5 132 30.3
Ah.03g145700 Amaranthus hybridus HOM05D006041 ORTHO05D007473 9.1e-06 55.1 152 28.9
A06p44210 Brassica napus HOM05D006041 ORTHO05D007473 9.1e-06 55.1 119 31.9


User provided reference genes

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