Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0019442 Camellia sinensis var. sinensis HOM05D004479 ORTHO05D005597 3.7e-257 891.3 559 100.0
Actinidia21882 Actinidia chinensis HOM05D004479 ORTHO05D005597 1.6e-212 743.0 569 77.7
Dinv09182 Davidia involucrata HOM05D004479 ORTHO05D005597 4.8e-204 714.9 568 76.9
GSVIVG01029540001 Vitis vinifera HOM05D004479 ORTHO05D005597 4.3e-189 665.2 564 75.2
TAR626G0959 Trochodendron aralioides HOM05D004479 ORTHO05D005597 6.2e-188 661.4 583 71.0
Cc04_g00200 Coffea canephora HOM05D004479 ORTHO05D005597 2.4e-187 659.4 540 73.9
Manes.06G177300 Manihot esculenta HOM05D004479 ORTHO05D005597 1.0e-177 627.5 575 71.1
Solyc03g123960.3 Solanum lycopersicum HOM05D004479 ORTHO05D005597 1.7e-177 626.7 566 69.3
MSTRG.10879 Avicennia marina HOM05D004479 ORTHO05D005597 2.2e-177 626.3 566 67.1
Ciclev10025265m.g Citrus clementina HOM05D004479 ORTHO05D005597 2.9e-177 625.9 584 68.3
Nitab4.5_0004918g0010 Nicotiana tabacum HOM05D004479 ORTHO05D005597 1.6e-175 620.2 567 70.2
Rhsim08G0249800 Rhododendron simsii HOM05D004479 ORTHO05D005597 1.6e-175 620.2 539 72.2
HanXRQChr12g0359691 Helianthus annuus HOM05D004479 ORTHO05D005597 1.4e-174 617.1 562 70.1
vmacro18747 Vaccinium macrocarpon HOM05D004479 ORTHO05D005597 2.3e-174 616.3 614 62.2
QL05p084035 Quercus lobata HOM05D004479 ORTHO05D005597 3.0e-174 615.9 562 68.1
Sopen03g041690 Solanum pennellii HOM05D004479 ORTHO05D005597 8.8e-174 614.4 598 65.6
Migut.I01194 Erythranthe guttata HOM05D004479 ORTHO05D005597 1.5e-173 613.6 569 66.8
Nn7g37005 Nelumbo nucifera HOM05D004479 ORTHO05D005597 2.5e-173 612.8 571 68.8
Prupe.1G049400 Prunus persica HOM05D004479 ORTHO05D005597 4.3e-173 612.1 574 67.8
Gohir.A01G221776 Gossypium hirsutum HOM05D004479 ORTHO05D005597 2.8e-172 609.4 576 67.2
CANSAT78G0411 Cannabis sativa HOM05D004479 ORTHO05D005597 5.3e-171 605.1 542 72.9
Nitab4.5_0002664g0040 Nicotiana tabacum HOM05D004479 ORTHO05D005597 2.6e-170 602.8 578 68.2
Atru.chr1.2695 Acer truncatum HOM05D004479 ORTHO05D005597 7.2e-168 594.7 567 69.7
Potri.010G253100 Populus trichocarpa HOM05D004479 ORTHO05D005597 7.9e-167 591.3 568 66.0
RcHm_v2.0_Chr4g0395701 Rosa chinensis HOM05D004479 ORTHO05D005597 3.9e-166 589.0 565 67.3
Gorai.010G142700 Gossypium raimondii HOM05D004479 ORTHO05D005597 6.7e-166 588.2 577 66.9
CAN.G790.12 Capsicum annuum HOM05D004479 ORTHO05D005597 1.1e-163 580.9 570 67.2
Lsat_1_v5_gn_5_137281 Lactuca sativa HOM05D004479 ORTHO05D005597 3.1e-163 579.3 511 72.4
MD16G1227300 Malus domestica HOM05D004479 ORTHO05D005597 9.1e-163 577.8 584 62.7
Medtr5g013930 Medicago truncatula HOM05D004479 ORTHO05D005597 5.0e-161 572.0 579 64.6
Oeu049641.1 Olea europaea HOM05D004479 ORTHO05D005597 4.7e-159 565.5 602 59.0
FvH4_4g04880 Fragaria vesca HOM05D004479 ORTHO05D005597 8.0e-159 564.7 542 68.6
COL.COLO4_31168 Corchorus olitorius HOM05D004479 ORTHO05D005597 1.0e-158 564.3 520 69.4
Duzib192G0061 Durio zibethinus HOM05D004479 ORTHO05D005597 2.3e-158 563.1 569 65.4
Thecc.06G058800 Theobroma cacao HOM05D004479 ORTHO05D005597 2.8e-156 556.2 575 63.5
TWI09G1491 Tripterygium wilfordii HOM05D004479 ORTHO05D005597 4.8e-156 555.4 494 70.6
ECA234G3188 Erigeron canadensis HOM05D001810 ORTHO05D005662 6.3e-156 555.1 525 65.1
Hma1.2p1_1111F.1_g258400 Hydrangea macrophylla HOM05D004479 ORTHO05D005597 6.3e-156 555.1 467 73.9
TPR.G5557 Trifolium pratense HOM05D004479 ORTHO05D005597 1.1e-155 554.3 572 62.8
EL10Ac7g18162 Beta vulgaris HOM05D004479 ORTHO05D005597 4.1e-155 552.4 522 64.2
arahy.Tifrunner.gnm1.ann1.HYUF3S Arachis hypogaea HOM05D004479 ORTHO05D005597 3.8e-153 545.8 541 66.0
Eucgr.J03177 Eucalyptus grandis HOM05D004479 ORTHO05D005597 5.0e-153 545.4 553 63.3
arahy.Tifrunner.gnm1.ann1.SFLF9H Arachis hypogaea HOM05D004479 ORTHO05D005597 1.1e-152 544.3 541 65.8
Glyma.12G188300 Glycine max HOM05D004479 ORTHO05D005597 1.9e-152 543.5 545 64.2
Peaxi162Scf00038g02656 Petunia axillaris HOM05D004479 ORTHO05D005597 1.9e-152 543.5 558 59.5
Aqoxy7G02788 Aquilegia oxysepala HOM05D004479 ORTHO05D005597 3.6e-151 539.3 566 65.4
VMungo1080G0276 Vigna mungo HOM05D004479 ORTHO05D005597 8.0e-151 538.1 547 65.4
PGR119G2289 Punica granatum HOM05D004479 ORTHO05D005597 1.0e-150 537.7 547 64.9
CsaV3_3G030520 Cucumis sativus L. HOM05D004479 ORTHO05D005597 1.5e-149 533.9 578 58.7
MELO3C026710.2 Cucumis melo HOM05D004479 ORTHO05D005597 3.3e-149 532.7 573 60.4
Cfa002151 Carpinus fangiana HOM05D004479 ORTHO05D005597 4.4e-149 532.3 490 71.4
Sabra10G0196900 Salix brachista HOM05D004479 ORTHO05D005597 1.3e-148 530.8 685 52.8
Gohir.A06G118600 Gossypium hirsutum HOM05D004479 ORTHO05D005597 2.8e-148 529.6 586 62.3
Nitab4.5_0005664g0060 Nicotiana tabacum HOM05D004479 ORTHO05D005597 6.3e-148 528.5 533 59.3
Sc12g0011150 Simmondsia chinensis HOM05D004479 ORTHO05D005597 1.1e-147 527.7 564 64.7
Ca_21726_v3 Cicer arietinum L. HOM05D004479 ORTHO05D005597 3.1e-147 526.2 543 63.5
Hund18609 Selenicereus undatus HOM05D004479 ORTHO05D005597 4.5e-146 522.3 581 58.9
THA.LOC104800314 Tarenaya hassleriana HOM05D004479 ORTHO05D005597 2.9e-145 519.6 587 57.2
Ah.15g094320 Amaranthus hybridus HOM05D004479 ORTHO05D005597 8.5e-145 518.1 567 62.3
Phvul.005G185100 Phaseolus vulgaris HOM05D004479 ORTHO05D005597 1.9e-144 516.9 548 63.7
FAN17G0751 Fragaria x ananassa HOM05D004479 ORTHO05D005597 2.7e-143 513.1 555 58.7
Lj6C65T2 Lonicera japonica HOM05D004479 ORTHO05D005597 4.7e-143 512.3 393 76.8
Sed0022371 Sechium edule HOM05D004479 ORTHO05D005597 8.0e-143 511.5 548 62.0
ClCG07G014640 Citrullus lanatus HOM05D004479 ORTHO05D005597 4.4e-141 505.8 579 56.5
FAN22G0181 Fragaria x ananassa HOM05D004479 ORTHO05D005597 1.7e-140 503.8 502 63.5
RcHm_v2.0_Chr4g0395721 Rosa chinensis HOM05D004479 ORTHO05D005597 3.7e-140 502.7 487 67.1
MBI13_g34036_MAGBIO Magnolia biondii HOM05D004479 ORTHO05D005597 3.5e-138 496.1 485 68.0
SalBow6G0079 Salvia bowleyana HOM05D004479 ORTHO05D005597 1.3e-137 494.2 566 54.1
Lj3g0018425 Lotus japonicus HOM05D004479 ORTHO05D005597 3.8e-137 492.7 502 64.7
PSO170G2367 Papaver somniferum HOM05D004479 ORTHO05D005597 3.8e-137 492.7 575 58.8
Sp2g14070 Schrenkiella parvula HOM05D004479 ORTHO05D005597 3.3e-136 489.6 570 58.1
MBI13_g01743_MAGBIO Magnolia biondii HOM05D004479 ORTHO05D005597 9.5e-136 488.0 489 66.9
unitig_748.g8028 Utricularia gibba HOM05D004479 ORTHO05D005597 1.6e-135 487.3 594 52.9
Zm00001eb320420 Zea mays HOM05D004479 ORTHO05D005597 1.8e-134 483.8 541 55.3
PSO384G0383 Papaver somniferum HOM05D004479 ORTHO05D005597 9.8e-133 478.0 584 57.7
HPP92_008247 Vanilla planifolia HOM05D004479 ORTHO05D005597 3.1e-131 473.0 559 54.0
PSO063G0217 Papaver somniferum HOM05D004479 ORTHO05D005597 2.7e-130 469.9 580 57.4
AUR62001343 Chenopodium quinoa HOM05D004479 ORTHO05D005597 7.8e-130 468.4 563 55.2
Aa31LG2G7330 Aethionema arabicum HOM05D004479 ORTHO05D005597 1.3e-129 467.6 550 54.9
CDE02G4004 Ceratophyllum demersum HOM05D004479 ORTHO05D005597 3.9e-129 466.1 545 57.1
AT2G03070 Arabidopsis thaliana HOM05D004479 ORTHO05D005597 1.5e-128 464.2 545 59.3
Hund18598 Selenicereus undatus HOM05D004479 ORTHO05D005597 4.7e-127 459.1 478 61.5
CARHR213680 Cardamine hirsuta HOM05D004479 ORTHO05D005597 5.8e-125 452.2 576 55.0
PGSC0003DMG400009164 Solanum tuberosum HOM05D004479 ORTHO05D005597 7.5e-125 451.8 387 73.9
SGA_v2.0_scaffold122G33268 Striga asiatica HOM05D004479 ORTHO05D005597 9.8e-125 451.4 569 54.8
ATR0626G211 Amborella trichopoda HOM05D004479 ORTHO05D005597 2.4e-123 446.8 532 53.6
Psat5g288040 Pisum sativum HOM05D004479 ORTHO05D005597 2.7e-122 443.4 445 64.5
A09p24080 Brassica napus HOM05D004479 ORTHO05D005597 4.3e-120 436.0 543 60.4
BraA09t38008Z Brassica rapa HOM05D004479 ORTHO05D005597 1.6e-119 434.1 544 60.3
BcaC04g21507 Brassica carinata HOM05D004479 ORTHO05D005597 1.1e-118 431.4 542 59.0
C09p30960 Brassica napus HOM05D004479 ORTHO05D005597 8.9e-118 428.3 542 58.9
BolC9t55955H Brassica oleracea HOM05D004479 ORTHO05D005597 8.9e-118 428.3 542 58.9
BcaB07g30687 Brassica carinata HOM05D004479 ORTHO05D005597 2.0e-117 427.2 486 62.3
Carub.0005s0192 Capsella rubella HOM05D004479 ORTHO05D005597 2.0e-117 427.2 569 54.3
Glyma.13G372700 Glycine max HOM05D004479 ORTHO05D005597 6.0e-114 415.6 452 63.9
Thhalv10004003m.g Eutrema salsugineum HOM05D004479 ORTHO05D005597 2.3e-113 413.7 566 53.5
AL5G12650 Arabidopsis lyrata HOM05D004479 ORTHO05D005597 5.1e-113 412.5 540 57.2
AUR62025661 Chenopodium quinoa HOM05D004479 ORTHO05D005597 5.1e-113 412.5 492 53.7
DCAR_030619 Daucus carota HOM05D004479 ORTHO05D005597 1.5e-112 411.0 352 66.5
Gohir.D06G122500 Gossypium hirsutum HOM05D004479 ORTHO05D005597 1.2e-111 407.9 433 62.6
Ca_04816_v3 Cicer arietinum L. HOM05D004479 ORTHO05D005597 8.3e-108 395.2 542 54.2
Dinv37782 Davidia involucrata HOM05D004479 ORTHO05D005597 1.1e-104 384.8 351 75.8
Dinv37783 Davidia involucrata HOM05D004479 ORTHO05D005597 3.8e-92 343.2 217 84.3
PSO836G0001 Papaver somniferum HOM05D004479 ORTHO05D005597 1.4e-83 314.7 487 51.7
Haze_16264 Corylus avellana HOM05D004479 ORTHO05D005597 3.7e-79 300.1 194 79.4
Cpa.g.sc1515.2 Carica papaya HOM05D004479 ORTHO05D005597 1.0e-76 292.0 217 71.0
Os03g0423800 Oryza sativa ssp. japonica HOM05D004479 ORTHO05D005597 1.7e-76 291.2 232 66.4
BraA06t27217Z Brassica rapa HOM05D004479 ORTHO05D005597 9.7e-64 248.8 215 60.9
BcaC06g31203 Brassica carinata HOM05D004479 ORTHO05D005597 1.4e-62 245.0 216 58.8
BolC7t43874H Brassica oleracea HOM05D004479 ORTHO05D005597 1.8e-62 244.6 215 61.9
BcaC06g34021 Brassica carinata HOM05D004479 ORTHO05D005597 9.0e-62 242.3 215 61.4
Pp3c18_4030 Physcomitrium patens HOM05D004479 ORTHO05D005597 4.2e-59 233.4 302 46.7
A06p43310 Brassica napus HOM05D004479 ORTHO05D005597 2.3e-57 227.6 246 52.4
Oeu062492.1 Olea europaea HOM05D004479 ORTHO05D005597 8.2e-55 219.2 216 55.6
Mapoly0029s0023 Marchantia polymorpha HOM05D004479 ORTHO05D005597 5.7e-48 196.4 301 41.9
Psat1g118080 Pisum sativum HOM05D004479 ORTHO05D005597 7.0e-46 189.5 168 60.7
CiPaw.01G090700 Carya illinoinensis HOM05D004479 ORTHO05D005597 1.2e-45 188.7 203 68.5
C07p33640 Brassica napus HOM05D004479 ORTHO05D005597 1.7e-44 184.9 215 53.0
SMO114G0145 Selaginella moellendorffii HOM05D004479 ORTHO05D005597 1.3e-39 168.7 222 44.1
AagrBONN_evm.TU.Sc2ySwM_117.2251 Anthoceros agrestis HOM05D004479 ORTHO05D005597 6.3e-39 166.4 203 46.3
AagrBONN_evm.TU.Sc2ySwM_117.1357 Anthoceros agrestis HOM05D004479 ORTHO05D005597 1.2e-37 162.2 205 45.4
Aqoxy377s002 Aquilegia oxysepala HOM05D004479 ORTHO05D005597 1.6e-37 161.8 157 63.7
CBR_g41305 Chara braunii HOM05D004479 ORTHO05D005597 5.9e-37 159.8 222 42.8
CARHR145470 Cardamine hirsuta HOM05D004479 ORTHO05D005597 2.0e-32 144.8 94 78.7
SEGI_11469 Sequoiadendron giganteum HOM05D004479 ORTHO05D005597 1.4e-25 122.1 155 48.4
Psat0s1762g0040 Pisum sativum HOM05D004479 ORTHO05D005597 3.0e-25 120.9 184 42.9
Actinidia21652 Actinidia chinensis HOM05D004479 ORTHO05D005597 5.2e-25 120.2 66 87.9
Cpa.g.sc155.18 Carica papaya HOM05D004479 ORTHO05D005597 1.1e-22 112.5 103 67.0
COL.COLO4_31578 Corchorus olitorius HOM05D001810 ORTHO05D005662 1.4e-22 112.1 200 43.0
DCAR_030620 Daucus carota HOM05D004479 ORTHO05D005597 3.5e-21 107.5 99 65.7
Psat0s1227g0080 Pisum sativum HOM05D000020 ORTHO05D015801 1.7e-20 105.1 106 60.4
QL03p033126 Quercus lobata HOM05D004479 ORTHO05D005597 1.9e-19 101.7 74 74.3
SEGI_18721 Sequoiadendron giganteum HOM05D004479 ORTHO05D005597 2.5e-19 101.3 91 58.2
SHI42840 Sapria himalayana HOM05D004479 ORTHO05D005597 2.1e-18 98.2 133 48.1
SHI42601 Sapria himalayana HOM05D004479 ORTHO05D005597 6.8e-17 93.2 156 42.3
QL05p046913 Quercus lobata HOM05D004479 ORTHO05D005597 2.2e-15 88.2 141 49.6
Psat7g008520 Pisum sativum HOM05D004479 ORTHO05D005597 2.4e-14 84.7 75 64.0
SHI24407 Sapria himalayana HOM05D004479 ORTHO05D005597 1.6e-13 82.0 178 39.9
Hma1.2p1_0370F.1_g138010 Hydrangea macrophylla HOM05D004479 ORTHO05D005597 2.7e-13 81.3 73 72.6
Psat0s2660g0040 Pisum sativum HOM05D000020 ORTHO05D015801 1.0e-12 79.3 85 55.3
COL.COLO4_18371 Corchorus olitorius HOM05D004479 ORTHO05D005597 1.7e-12 78.6 69 58.0
SHI42976 Sapria himalayana HOM05D004479 ORTHO05D005597 1.5e-11 75.5 115 44.3
FAN12G4029 Fragaria x ananassa HOM05D002474 ORTHO05D007142 7.3e-11 73.2 117 47.9
Cpa.g.sc1515.1 Carica papaya HOM05D004479 ORTHO05D005597 9.5e-11 72.8 87 78.2
Psat3g045760 Pisum sativum HOM05D004392 ORTHO05D004846 1.6e-10 72.0 69 59.4
SHI31116 Sapria himalayana HOM05D004479 ORTHO05D005597 2.1e-10 71.6 46 71.7
Haze_16261 Corylus avellana HOM05D004479 ORTHO05D029161 2.8e-10 71.2 68 63.2
Nitab4.5_0005739g0060 Nicotiana tabacum HOM05D004479 ORTHO05D029161 2.8e-10 71.2 97 53.6
BcaC04g22058 Brassica carinata HOM05D006908 ORTHO05D008662 4.7e-10 70.5 39 84.6
C09p24010 Brassica napus HOM05D002960 ORTHO05D042139 4.7e-10 70.5 39 84.6
BolC9t55321H Brassica oleracea HOM05D002960 ORTHO05D042139 4.7e-10 70.5 39 84.6
SHI31115 Sapria himalayana HOM05D004479 ORTHO05D005597 4.7e-10 70.5 59 62.7
Haze_18674 Corylus avellana HOM05D004479 ORTHO05D005597 8.0e-10 69.7 40 82.5
SHI34972 Sapria himalayana HOM05D004479 ORTHO05D005597 1.0e-09 69.3 115 40.9
SHI50578 Sapria himalayana HOM05D004479 ORTHO05D005597 1.8e-09 68.6 113 44.2
Lj5C22T9 Lonicera japonica HOM05D004479 ORTHO05D029161 5.2e-09 67.0 69 69.6
COL.COLO4_27264 Corchorus olitorius HOM05D004479 ORTHO05D005597 6.8e-09 66.6 59 57.6
SHI49595 Sapria himalayana HOM05D004479 ORTHO05D005597 8.9e-09 66.2 113 41.6
Peaxi162Scf00038g02640 Petunia axillaris HOM05D004479 ORTHO05D029161 2.0e-08 65.1 43 76.7
SHI36675 Sapria himalayana HOM05D004479 ORTHO05D005597 9.8e-08 62.8 54 64.8
BcaC02g11491 Brassica carinata HOM05D019637 ORTHO05D018695 4.9e-07 60.5 40 80.0
C04p14790 Brassica napus HOM05D004479 ORTHO05D018695 4.9e-07 60.5 40 80.0
BolC4t23053H Brassica oleracea HOM05D004479 ORTHO05D018695 4.9e-07 60.5 40 80.0
QL08p038027 Quercus lobata HOM05D004479 ORTHO05D337893 3.2e-06 57.8 44 68.2


User provided reference genes

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