Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0019438 Camellia sinensis var. sinensis HOM05D005720 ORTHO05D006984 0.0e+00 1114.8 578 100.0
CSS0038820 Camellia sinensis var. sinensis HOM05D005720 ORTHO05D006984 1.1e-267 926.4 589 85.6
Rhsim03G0197100 Rhododendron simsii HOM05D005720 ORTHO05D006984 9.1e-174 614.4 511 66.3
Dinv28352 Davidia involucrata HOM05D005720 ORTHO05D006984 3.9e-161 572.4 1004 40.9
Actinidia08611 Actinidia chinensis HOM05D005720 ORTHO05D006984 3.4e-136 489.6 868 40.6
Lj3A914T79 Lonicera japonica HOM05D005720 ORTHO05D006984 2.3e-124 450.3 487 53.4
Hma1.2p1_0142F.1_g064130 Hydrangea macrophylla HOM05D005720 ORTHO05D006984 9.8e-120 434.9 991 35.2
GSVIVG01028746001 Vitis vinifera HOM05D005720 ORTHO05D006984 3.0e-116 423.3 956 36.1
Cfa016346 Carpinus fangiana HOM05D005720 ORTHO05D006984 1.6e-114 417.5 465 54.0
QL09p011597 Quercus lobata HOM05D005720 ORTHO05D006984 8.9e-113 411.8 492 51.2
CiPaw.06G006200 Carya illinoinensis HOM05D005720 ORTHO05D006984 2.6e-112 410.2 483 52.4
TAR636G3648 Trochodendron aralioides HOM05D005720 ORTHO05D006984 2.3e-108 397.1 483 49.7
Solyc03g007550.4 Solanum lycopersicum HOM05D005720 ORTHO05D006984 4.3e-107 392.9 438 53.2
Sopen03g003510 Solanum pennellii HOM05D005720 ORTHO05D006984 4.3e-107 392.9 438 53.2
Hma1.2p1_0142F.1_g064140 Hydrangea macrophylla HOM05D005720 ORTHO05D006984 1.1e-105 388.3 400 56.8
Potri.012G033800 Populus trichocarpa HOM05D005720 ORTHO05D006984 4.0e-105 386.3 462 50.9
Nitab4.5_0001331g0120 Nicotiana tabacum HOM05D005720 ORTHO05D006984 6.8e-105 385.6 853 36.1
Manes.06G155900 Manihot esculenta HOM05D005720 ORTHO05D006984 2.2e-103 380.6 479 48.0
Thecc.03G190400 Theobroma cacao HOM05D005720 ORTHO05D006984 1.9e-102 377.5 479 48.6
vmacro06589 Vaccinium macrocarpon HOM05D005720 ORTHO05D006984 2.4e-102 377.1 307 68.1
HanXRQChr11g0353671 Helianthus annuus HOM05D005720 ORTHO05D006984 2.1e-101 374.0 466 49.1
TWI39G1277 Tripterygium wilfordii HOM05D005720 ORTHO05D006984 2.1e-101 374.0 479 47.6
Peaxi162Scf00904g00464 Petunia axillaris HOM05D005720 ORTHO05D006984 4.6e-101 372.9 437 51.9
Nitab4.5_0000472g0110 Nicotiana tabacum HOM05D005720 ORTHO05D006984 1.9e-99 367.5 443 51.9
CAN.G108.10 Capsicum annuum HOM05D005720 ORTHO05D006984 7.3e-99 365.5 449 50.6
ECA248G2416 Erigeron canadensis HOM05D005720 ORTHO05D006984 1.6e-98 364.4 465 48.8
Cc02_g02050 Coffea canephora HOM05D005720 ORTHO05D006984 2.8e-98 363.6 961 31.9
MSTRG.27056 Avicennia marina HOM05D005720 ORTHO05D006984 4.7e-98 362.8 447 47.4
Sabra12G0022900 Salix brachista HOM05D005720 ORTHO05D006984 4.7e-98 362.8 479 48.4
MD01G1213400 Malus domestica HOM05D005720 ORTHO05D006984 1.4e-97 361.3 532 46.6
Hma1.2p1_1891F.1_g306670 Hydrangea macrophylla HOM05D005720 ORTHO05D006984 3.1e-97 360.1 803 35.4
Gohir.D09G177900 Gossypium hirsutum HOM05D005720 ORTHO05D006984 4.0e-97 359.8 516 45.7
Gorai.006G200000 Gossypium raimondii HOM05D005720 ORTHO05D006984 6.9e-97 359.0 516 45.5
Duzib084G1243 Durio zibethinus HOM05D005720 ORTHO05D006984 2.0e-96 357.5 479 46.6
Gohir.A09G183200 Gossypium hirsutum HOM05D005720 ORTHO05D006984 4.4e-96 356.3 516 45.5
HanXRQChr01g0031161 Helianthus annuus HOM05D005720 ORTHO05D006984 2.2e-95 354.0 457 48.1
MD07G1283200 Malus domestica HOM05D005720 ORTHO05D006984 2.9e-95 353.6 481 49.9
MD01G1213200 Malus domestica HOM05D005720 ORTHO05D006984 4.9e-95 352.8 485 48.7
Migut.F00255 Erythranthe guttata HOM05D005720 ORTHO05D006984 3.2e-94 350.1 439 49.4
Oeu037117.2 Olea europaea HOM05D005720 ORTHO05D006984 3.2e-94 350.1 432 50.0
Nn1g01775 Nelumbo nucifera HOM05D005720 ORTHO05D006984 9.3e-94 348.6 479 47.6
Prupe.2G305400 Prunus persica HOM05D005720 ORTHO05D006984 1.6e-93 347.8 478 47.9
DCAR_010640 Daucus carota HOM05D005720 ORTHO05D006984 1.7e-92 344.4 529 42.9
FvH4_7g30790 Fragaria vesca HOM05D005720 ORTHO05D006984 2.5e-91 340.5 473 47.4
RcHm_v2.0_Chr1g0379731 Rosa chinensis HOM05D005720 ORTHO05D006984 5.6e-91 339.3 470 48.1
Lsat_1_v5_gn_1_45000 Lactuca sativa HOM05D005720 ORTHO05D006984 3.6e-90 336.7 553 43.2
FAN06G1427 Fragaria x ananassa HOM05D005720 ORTHO05D006984 2.6e-88 330.5 480 46.5
FAN03G0014 Fragaria x ananassa HOM05D005720 ORTHO05D006984 3.4e-88 330.1 473 47.6
FAN01G1865 Fragaria x ananassa HOM05D005720 ORTHO05D006984 7.6e-88 328.9 477 46.5
FAN06G3446 Fragaria x ananassa HOM05D005720 ORTHO05D006984 9.9e-88 328.6 477 46.5
Lalb_Chr06g0161451 Lupinus albus HOM05D005720 ORTHO05D006984 1.7e-87 327.8 466 46.1
SalBow4G2744 Salvia bowleyana HOM05D005720 ORTHO05D006984 3.2e-86 323.6 440 48.4
SalBow4G2908 Salvia bowleyana HOM05D005720 ORTHO05D006984 9.3e-86 322.0 440 48.2
FAN10G0387 Fragaria x ananassa HOM05D005720 ORTHO05D006984 2.3e-84 317.4 479 46.1
Sc13g0009450 Simmondsia chinensis HOM05D005720 ORTHO05D006984 3.9e-84 316.6 459 46.4
EL10Ac3g05366 Beta vulgaris HOM05D005720 ORTHO05D006984 3.3e-83 313.5 471 44.6
COL.COLO4_24780 Corchorus olitorius HOM05D005720 ORTHO05D006984 3.3e-83 313.5 532 41.2
Haze_00092 Corylus avellana HOM05D005720 ORTHO05D006984 1.6e-82 311.2 479 45.7
THA.LOC104825125 Tarenaya hassleriana HOM05D005720 ORTHO05D006984 4.8e-82 309.7 465 45.8
Ca_27881_v3 Cicer arietinum L. HOM05D005720 ORTHO05D006984 6.2e-82 309.3 458 45.9
Cpa.g.sc3.32 Carica papaya HOM05D005720 ORTHO05D006984 1.4e-81 308.1 507 41.8
Lj3g0007394 Lotus japonicus HOM05D005720 ORTHO05D006984 5.3e-81 306.2 465 45.6
AUR62031469 Chenopodium quinoa HOM05D005720 ORTHO05D006984 1.5e-80 304.7 458 45.2
Phvul.011G167400 Phaseolus vulgaris HOM05D005720 ORTHO05D006984 5.8e-80 302.8 508 43.3
CsaV3_4G002370 Cucumis sativus L. HOM05D005720 ORTHO05D006984 1.4e-78 298.1 462 43.5
Aqoxy7G00210 Aquilegia oxysepala HOM05D005720 ORTHO05D006984 7.1e-78 295.8 536 41.4
Glyma.16G069100 Glycine max HOM05D005720 ORTHO05D006984 7.1e-78 295.8 484 44.0
PGR142G3228 Punica granatum HOM05D005720 ORTHO05D006984 6.0e-77 292.7 808 34.3
MELO3C017804.2 Cucumis melo HOM05D005720 ORTHO05D006984 7.9e-77 292.4 436 44.5
Eucgr.K00315 Eucalyptus grandis HOM05D005720 ORTHO05D006984 7.9e-77 292.4 477 42.1
TPR.G16464 Trifolium pratense HOM05D005720 ORTHO05D006984 3.0e-76 290.4 469 42.4
Aa31LG3G9180 Aethionema arabicum HOM05D005720 ORTHO05D006984 3.7e-74 283.5 519 38.2
CARHR265920 Cardamine hirsuta HOM05D005720 ORTHO05D006984 6.9e-73 279.3 528 38.6
Thhalv10012590m.g Eutrema salsugineum HOM05D005720 ORTHO05D006984 1.2e-72 278.5 489 40.1
SGA_v2.0_scaffold192G40596 Striga asiatica HOM05D005720 ORTHO05D006984 3.4e-72 276.9 397 45.8
Ah.07g206170 Amaranthus hybridus HOM05D005720 ORTHO05D006984 4.5e-72 276.6 520 39.6
AT5G52950 Arabidopsis thaliana HOM05D005720 ORTHO05D006984 7.6e-72 275.8 480 40.6
arahy.Tifrunner.gnm1.ann1.35A5BC Arachis hypogaea HOM05D005720 ORTHO05D006984 1.0e-71 275.4 535 38.3
AL8G27450 Arabidopsis lyrata HOM05D005720 ORTHO05D006984 1.3e-71 275.0 483 39.5
AUR62021063 Chenopodium quinoa HOM05D005720 ORTHO05D006984 2.2e-71 274.2 457 41.8
Hund11695 Selenicereus undatus HOM05D005720 ORTHO05D006984 2.2e-71 274.2 444 43.0
arahy.Tifrunner.gnm1.ann1.YA4Y9S Arachis hypogaea HOM05D005720 ORTHO05D006984 1.9e-70 271.2 535 37.9
Sed0011275 Sechium edule HOM05D005720 ORTHO05D006984 9.3e-70 268.9 333 47.7
MBI06_g04292_MAGBIO Magnolia biondii HOM05D005720 ORTHO05D006984 1.6e-69 268.1 465 40.4
Carub.0008s1313 Capsella rubella HOM05D005720 ORTHO05D006984 2.1e-69 267.7 485 39.4
PSO135G0324 Papaver somniferum HOM05D005720 ORTHO05D006984 4.8e-66 256.5 542 35.8
Medtr8g058270 Medicago truncatula HOM05D005720 ORTHO05D006984 1.4e-65 255.0 428 41.1
PSO384G4812 Papaver somniferum HOM05D005720 ORTHO05D006984 5.3e-65 253.1 567 34.9
unitig_747.g21855 Utricularia gibba HOM05D000121 ORTHO05D000102 6.9e-65 252.7 438 39.7
VMungo1127G0215 Vigna mungo HOM05D005720 ORTHO05D006984 1.7e-63 248.1 476 40.5
PGSC0003DMG400006595 Solanum tuberosum HOM05D005720 ORTHO05D006984 8.5e-63 245.7 247 57.5
Psat4g140280 Pisum sativum HOM05D005720 ORTHO05D006984 2.5e-62 244.2 475 39.2
A02p11480 Brassica napus HOM05D005720 ORTHO05D006984 1.2e-61 241.9 489 37.2
Psat0s2250g0040 Pisum sativum HOM05D005720 ORTHO05D006984 8.8e-60 235.7 384 42.4
BraA02t06213Z Brassica rapa HOM05D005720 ORTHO05D006984 1.1e-59 235.3 489 36.8
Sp6g15110 Schrenkiella parvula HOM05D005720 ORTHO05D006984 1.9e-59 234.6 486 36.6
TAR629G3278 Trochodendron aralioides HOM05D005720 ORTHO05D006984 2.2e-58 231.1 248 56.5
C02p19150 Brassica napus HOM05D005720 ORTHO05D006984 6.9e-57 226.1 476 36.3
BolC2t08045H Brassica oleracea HOM05D005720 ORTHO05D006984 3.4e-56 223.8 476 36.1
BcaC03g14481 Brassica carinata HOM05D005720 ORTHO05D006984 5.9e-56 223.0 488 35.9
C09p42670 Brassica napus HOM05D005720 ORTHO05D006984 7.7e-56 222.6 531 34.1
BolC9t57143H Brassica oleracea HOM05D005720 ORTHO05D006984 7.7e-56 222.6 531 34.1
ClCG07G011830 Citrullus lanatus HOM05D005720 ORTHO05D006984 2.2e-55 221.1 468 36.1
BcaB05g21993 Brassica carinata HOM05D005720 ORTHO05D006984 5.0e-55 219.9 664 33.3
FAN10G2558 Fragaria x ananassa HOM05D005720 ORTHO05D006984 2.0e-48 198.0 289 45.0
HPP92_005221 Vanilla planifolia HOM05D005720 ORTHO05D006984 5.9e-48 196.4 444 35.8
Zm00001eb119640 Zea mays HOM05D005720 ORTHO05D006984 2.1e-45 188.0 541 31.2
SEGI_30168 Sequoiadendron giganteum HOM05D005720 ORTHO05D006984 1.8e-44 184.9 465 33.5
CDE02G2607 Ceratophyllum demersum HOM05D005720 ORTHO05D006984 2.8e-42 177.6 497 32.2
TAR629G0723 Trochodendron aralioides HOM05D005720 ORTHO05D006984 1.2e-40 172.2 214 45.8
Hma1.2p1_0142F.1_g064120 Hydrangea macrophylla HOM05D005720 ORTHO05D006984 3.5e-40 170.6 146 68.5
Os01g0222300 Oryza sativa ssp. japonica HOM05D005720 ORTHO05D006984 7.2e-38 162.9 359 36.5
ATR1131G019 Amborella trichopoda HOM05D005720 ORTHO05D006984 3.6e-37 160.6 440 33.0
HPP92_005214 Vanilla planifolia HOM05D005720 ORTHO05D006984 4.0e-36 157.1 436 31.9
Lj3P914T60 Lonicera japonica HOM05D005720 ORTHO05D006984 5.0e-31 140.2 151 59.6
Actinidia30732 Actinidia chinensis HOM05D005720 ORTHO05D006984 1.5e-30 138.7 159 53.5
SHI10811 Sapria himalayana HOM05D005720 ORTHO05D006984 4.8e-26 123.6 430 31.4
vmacro06588 Vaccinium macrocarpon HOM05D005720 ORTHO05D006984 4.1e-25 120.6 137 55.5
Actinidia34180 Actinidia chinensis HOM05D005720 ORTHO05D006984 4.0e-20 104.0 109 56.9
SHI10812 Sapria himalayana HOM05D005720 ORTHO05D006984 1.8e-17 95.1 214 36.0
BraA10t43127Z Brassica rapa HOM05D005720 ORTHO05D006984 1.6e-16 92.0 129 46.5
BcaB08g35658 Brassica carinata HOM05D005720 ORTHO05D006984 2.7e-16 91.3 249 32.1
MBI16_g03132_MAGBIO Magnolia biondii HOM05D005720 ORTHO05D006984 1.2e-13 82.4 185 34.6
RcHm_v2.0_Chr1g0379741 Rosa chinensis HOM05D005720 ORTHO05D006984 2.8e-13 81.3 91 58.2
Lju188P3T29 Lonicera japonica HOM05D005720 ORTHO05D006984 1.4e-12 79.0 91 57.1
MSTRG.8687 Avicennia marina HOM05D005720 ORTHO05D006984 2.0e-11 75.1 130 43.1
Mapoly0039s0001 Marchantia polymorpha HOM05D005720 ORTHO05D006984 5.8e-11 73.6 251 27.9
SEGI_32546 Sequoiadendron giganteum HOM05D005720 ORTHO05D006984 1.3e-07 62.4 385 25.7
Lsat_1_v5_gn_5_90621 Lactuca sativa HOM05D005720 ORTHO05D006984 1.1e-06 59.3 145 36.6
Pp3c15_13500 Physcomitrium patens HOM05D005720 ORTHO05D006984 5.6e-06 57.0 280 26.8


User provided reference genes

Program Settings