Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0019434 Camellia sinensis var. sinensis HOM05D003958 ORTHO05D004864 1.7e-42 175.6 93 100.0
Dinv35088 Davidia involucrata HOM05D003958 ORTHO05D004864 2.2e-21 105.5 130 52.3
AUR62023705 Chenopodium quinoa HOM05D003958 ORTHO05D004864 3.7e-21 104.8 74 74.3
Ciclev10016011m.g Citrus clementina HOM05D003958 ORTHO05D004864 3.7e-21 104.8 74 77.0
Atru.chr6.2249 Acer truncatum HOM05D003958 ORTHO05D004864 6.4e-21 104.0 74 75.7
Atru.chr6.2341 Acer truncatum HOM05D003958 ORTHO05D004864 6.4e-21 104.0 74 75.7
Duzib147G0897 Durio zibethinus HOM05D003958 ORTHO05D004864 6.4e-21 104.0 74 75.7
Eucgr.I01766 Eucalyptus grandis HOM05D003958 ORTHO05D004864 6.4e-21 104.0 74 75.7
Lj7A595G65 Lonicera japonica HOM05D003958 ORTHO05D004864 6.4e-21 104.0 74 75.7
CAN.G206.10 Capsicum annuum HOM05D003958 ORTHO05D004864 8.4e-21 103.6 74 74.3
CiPaw.04G026700 Carya illinoinensis HOM05D003958 ORTHO05D004864 8.4e-21 103.6 74 74.3
Nitab4.5_0008215g0010 Nicotiana tabacum HOM05D003958 ORTHO05D004864 8.4e-21 103.6 74 74.3
Sed0009763 Sechium edule HOM05D003958 ORTHO05D004864 8.4e-21 103.6 74 74.3
Glyma.13G234900 Glycine max HOM05D003958 ORTHO05D004864 1.1e-20 103.2 74 74.3
Gohir.D09G027100 Gossypium hirsutum HOM05D003958 ORTHO05D004864 1.1e-20 103.2 74 74.3
Gorai.006G031600 Gossypium raimondii HOM05D003958 ORTHO05D004864 1.1e-20 103.2 74 74.3
Cfa007405 Carpinus fangiana HOM05D003958 ORTHO05D004864 1.4e-20 102.8 74 74.3
Haze_14701 Corylus avellana HOM05D003958 ORTHO05D004864 1.4e-20 102.8 74 74.3
Oeu057051.1 Olea europaea HOM05D003958 ORTHO05D004864 1.4e-20 102.8 74 71.6
TPR.G11724 Trifolium pratense HOM05D003958 ORTHO05D004864 1.4e-20 102.8 74 74.3
EL10Ac9g21169 Beta vulgaris HOM05D003958 ORTHO05D004864 1.9e-20 102.4 74 71.6
CSS0020788 Camellia sinensis var. sinensis HOM05D003958 ORTHO05D004864 1.9e-20 102.4 74 74.3
CSS0020854 Camellia sinensis var. sinensis HOM05D003958 ORTHO05D004864 1.9e-20 102.4 74 74.3
Duzib147G0566 Durio zibethinus HOM05D003958 ORTHO05D004864 1.9e-20 102.4 74 74.3
Ca_00369_v3 Cicer arietinum L. HOM05D003958 ORTHO05D004864 2.4e-20 102.1 74 74.3
Gohir.D13G007800 Gossypium hirsutum HOM05D003958 ORTHO05D004864 2.4e-20 102.1 74 74.3
Lj3g0001252 Lotus japonicus HOM05D003958 ORTHO05D004864 2.4e-20 102.1 74 73.0
Peaxi162Scf00129g01325 Petunia axillaris HOM05D003958 ORTHO05D004864 2.4e-20 102.1 74 73.0
Phvul.011G172200 Phaseolus vulgaris HOM05D003958 ORTHO05D004864 2.4e-20 102.1 74 73.0
Sopen02g031390 Solanum pennellii HOM05D003958 ORTHO05D004864 2.4e-20 102.1 74 71.6
vmacro18265 Vaccinium macrocarpon HOM05D003958 ORTHO05D004864 2.4e-20 102.1 74 74.3
CiPaw.03G040700 Carya illinoinensis HOM05D003958 ORTHO05D004864 3.2e-20 101.7 74 74.3
Cc02_g12190 Coffea canephora HOM05D003958 ORTHO05D004864 3.2e-20 101.7 74 73.0
Glyma.15G078000 Glycine max HOM05D003958 ORTHO05D004864 3.2e-20 101.7 74 73.0
Gohir.A09G027800 Gossypium hirsutum HOM05D003958 ORTHO05D004864 3.2e-20 101.7 74 73.0
HanXRQChr09g0255001 Helianthus annuus HOM05D003958 ORTHO05D004864 3.2e-20 101.7 74 70.3
Lj2g0025561 Lotus japonicus HOM05D003958 ORTHO05D004864 3.2e-20 101.7 74 73.0
MBI05_g22036_MAGBIO Magnolia biondii HOM05D003958 ORTHO05D004864 3.2e-20 101.7 74 74.3
MD09G1029500 Malus domestica HOM05D003958 ORTHO05D004864 3.2e-20 101.7 74 74.3
MD17G1031500 Malus domestica HOM05D003958 ORTHO05D004864 3.2e-20 101.7 74 74.3
Nitab4.5_0002739g0040 Nicotiana tabacum HOM05D003958 ORTHO05D004864 3.2e-20 101.7 74 73.0
Hund02774 Selenicereus undatus HOM05D003958 ORTHO05D004864 3.2e-20 101.7 74 73.0
Thecc.04G013700 Theobroma cacao HOM05D003958 ORTHO05D004864 3.2e-20 101.7 74 74.3
MELO3C021808.2 Cucumis melo HOM05D003958 ORTHO05D004864 4.1e-20 101.3 74 73.0
CsaV3_1G037790 Cucumis sativus L. HOM05D003958 ORTHO05D004864 4.1e-20 101.3 74 73.0
DCAR_009028 Daucus carota HOM05D003958 ORTHO05D004864 4.1e-20 101.3 74 73.0
Migut.H00096 Erythranthe guttata HOM05D003958 ORTHO05D004864 4.1e-20 101.3 74 73.0
FvH4_6g51011 Fragaria vesca HOM05D003958 ORTHO05D004864 4.1e-20 101.3 74 73.0
FAN09G1134 Fragaria x ananassa HOM05D003958 ORTHO05D004864 4.1e-20 101.3 74 73.0
FAN14G0618 Fragaria x ananassa HOM05D003958 ORTHO05D004864 4.1e-20 101.3 74 73.0
QL02p075632 Quercus lobata HOM05D003958 ORTHO05D004864 4.1e-20 101.3 74 73.0
THA.LOC104821089 Tarenaya hassleriana HOM05D003958 ORTHO05D004864 4.1e-20 101.3 74 71.6
AUR62002487 Chenopodium quinoa HOM05D003958 ORTHO05D004864 5.4e-20 100.9 73 71.2
Lju41A38T12 Lonicera japonica HOM05D003958 ORTHO05D004864 5.4e-20 100.9 74 73.0
Manes.17G113700 Manihot esculenta HOM05D003958 ORTHO05D004864 5.4e-20 100.9 74 73.0
Prupe.3G287900 Prunus persica HOM05D003958 ORTHO05D004864 5.4e-20 100.9 74 73.0
RcHm_v2.0_Chr2g0172551 Rosa chinensis HOM05D003958 ORTHO05D004864 5.4e-20 100.9 74 73.0
arahy.Tifrunner.gnm1.ann1.M5ZQAR Arachis hypogaea HOM05D003958 ORTHO05D004864 7.1e-20 100.5 63 82.5
CANSAT64G0951 Cannabis sativa HOM05D003958 ORTHO05D004864 7.1e-20 100.5 74 73.0
ClCG01G008920 Citrullus lanatus HOM05D003958 ORTHO05D004864 7.1e-20 100.5 74 71.6
PGSC0003DMG400000483 Solanum tuberosum HOM05D003958 ORTHO05D004864 7.1e-20 100.5 74 73.0
arahy.Tifrunner.gnm1.ann1.38SPRB Arachis hypogaea HOM05D003958 ORTHO05D004864 9.2e-20 100.1 74 73.0
arahy.Tifrunner.gnm1.ann1.CB8F3G Arachis hypogaea HOM05D003958 ORTHO05D004864 9.2e-20 100.1 74 73.0
Cpa.g.sc108.31 Carica papaya HOM05D003958 ORTHO05D004864 9.2e-20 100.1 74 73.0
ECA232G3491 Erigeron canadensis HOM05D003958 ORTHO05D004864 9.2e-20 100.1 74 70.3
Medtr2g014590 Medicago truncatula HOM05D003958 ORTHO05D004864 9.2e-20 100.1 74 73.0
PGR054G0003 Punica granatum HOM05D003958 ORTHO05D004864 9.2e-20 100.1 74 73.0
PGR119G1149 Punica granatum HOM05D003958 ORTHO05D004864 9.2e-20 100.1 74 73.0
COL.COLO4_29053 Corchorus olitorius HOM05D003958 ORTHO05D004864 1.2e-19 99.8 74 71.6
Duzib147G0735 Durio zibethinus HOM05D003958 ORTHO05D004864 1.2e-19 99.8 74 73.0
Gohir.A06G000101 Gossypium hirsutum HOM05D003958 ORTHO05D004864 1.2e-19 99.8 74 73.0
Aa31LG11G15350 Aethionema arabicum HOM05D003958 ORTHO05D004864 1.6e-19 99.4 74 70.3
MSTRG.3157 Avicennia marina HOM05D003958 ORTHO05D004864 1.6e-19 99.4 74 70.3
CDE06G0036 Ceratophyllum demersum HOM05D003958 ORTHO05D004864 1.6e-19 99.4 74 71.6
Thhalv10014133m.g Eutrema salsugineum HOM05D003958 ORTHO05D004864 1.6e-19 99.4 74 70.3
Lsat_1_v5_gn_4_183181 Lactuca sativa HOM05D003958 ORTHO05D004864 1.6e-19 99.4 74 68.9
Lalb_Chr03g0031671 Lupinus albus HOM05D003958 ORTHO05D004864 1.6e-19 99.4 74 70.3
Psat1g092800 Pisum sativum HOM05D003958 ORTHO05D004864 1.6e-19 99.4 74 70.3
THA.LOC104802398 Tarenaya hassleriana HOM05D003958 ORTHO05D004864 1.6e-19 99.4 74 70.3
TPR.G33516 Trifolium pratense HOM05D003958 ORTHO05D004864 1.6e-19 99.4 74 70.3
AL6G25360 Arabidopsis lyrata HOM05D003958 ORTHO05D004864 2.1e-19 99.0 74 70.3
AT5G14600 Arabidopsis thaliana HOM05D003958 ORTHO05D004864 2.1e-19 99.0 74 70.3
Carub.0006s1277 Capsella rubella HOM05D003958 ORTHO05D004864 2.1e-19 99.0 74 70.3
Nn7g37719 Nelumbo nucifera HOM05D003958 ORTHO05D004864 2.1e-19 99.0 74 71.6
TAR622G1043 Trochodendron aralioides HOM05D003958 ORTHO05D004864 2.1e-19 99.0 74 71.6
CARHR198720 Cardamine hirsuta HOM05D003958 ORTHO05D004864 2.7e-19 98.6 74 70.3
Ah.07g203270 Amaranthus hybridus HOM05D003958 ORTHO05D004864 6.0e-19 97.4 75 72.0
Ca_00876_v3 Cicer arietinum L. HOM05D003958 ORTHO05D004864 6.0e-19 97.4 74 68.9
Sp6g29430 Schrenkiella parvula HOM05D003958 ORTHO05D004864 6.0e-19 97.4 74 68.9
Aqoxy2G00425 Aquilegia oxysepala HOM05D003958 ORTHO05D004864 7.8e-19 97.1 74 68.9
Aqoxy3G00906 Aquilegia oxysepala HOM05D003958 ORTHO05D004864 7.8e-19 97.1 74 68.9
A10p24040 Brassica napus HOM05D003958 ORTHO05D004864 7.8e-19 97.1 74 68.9
C09p62510 Brassica napus HOM05D003958 ORTHO05D004864 7.8e-19 97.1 74 68.9
BolC9t59091H Brassica oleracea HOM05D003958 ORTHO05D004864 7.8e-19 97.1 74 68.9
BraA10t44467Z Brassica rapa HOM05D003958 ORTHO05D004864 7.8e-19 97.1 74 68.9
SGA_v2.0_scaffold196G40937 Striga asiatica HOM05D003958 ORTHO05D004864 7.8e-19 97.1 73 69.9
TWI12G0059 Tripterygium wilfordii HOM05D003958 ORTHO05D004864 7.8e-19 97.1 74 70.3
ATR0057G029 Amborella trichopoda HOM05D003958 ORTHO05D004864 1.0e-18 96.7 74 70.3
arahy.Tifrunner.gnm1.ann1.Z5MU8N Arachis hypogaea HOM05D003958 ORTHO05D004864 1.0e-18 96.7 74 71.6
PSO063G1059 Papaver somniferum HOM05D003958 ORTHO05D004864 1.7e-18 95.9 74 67.6
PSO832G3613 Papaver somniferum HOM05D003958 ORTHO05D004864 1.7e-18 95.9 74 67.6
Zm00001eb071120 Zea mays HOM05D003958 ORTHO05D004864 1.7e-18 95.9 74 70.3
Medtr6g047800 Medicago truncatula HOM05D003958 ORTHO05D004864 2.3e-18 95.5 74 68.9
Psat1g202680 Pisum sativum HOM05D003958 ORTHO05D004864 2.3e-18 95.5 74 70.3
Potri.018G120500 Populus trichocarpa HOM05D003958 ORTHO05D004864 2.3e-18 95.5 74 70.3
Sabra18G0098500 Salix brachista HOM05D003958 ORTHO05D004864 2.3e-18 95.5 74 70.3
Sabra18G0099100 Salix brachista HOM05D003958 ORTHO05D004864 2.3e-18 95.5 74 70.3
Sabra18G0100500 Salix brachista HOM05D003958 ORTHO05D004864 2.3e-18 95.5 74 70.3
Sabra18G0101000 Salix brachista HOM05D003958 ORTHO05D004864 2.3e-18 95.5 74 70.3
VMungo0540G0822 Vigna mungo HOM05D003958 ORTHO05D004864 2.3e-18 95.5 74 70.3
Phvul.006G181700 Phaseolus vulgaris HOM05D003958 ORTHO05D004864 3.0e-18 95.1 74 70.3
Sabra18G0098900 Salix brachista HOM05D003958 ORTHO05D004864 3.0e-18 95.1 74 70.3
HPP92_013732 Vanilla planifolia HOM05D003958 ORTHO05D004864 3.9e-18 94.7 74 68.9
CSS0027303 Camellia sinensis var. sinensis HOM05D003958 ORTHO05D004864 5.1e-18 94.4 74 71.6
BcaC03g13470 Brassica carinata HOM05D003958 ORTHO05D004864 6.6e-18 94.0 74 67.6
BcaNung03113 Brassica carinata HOM05D003958 ORTHO05D004864 6.6e-18 94.0 74 67.6
Sc03g0007660 Simmondsia chinensis HOM05D003958 ORTHO05D004864 8.6e-18 93.6 74 68.9
SEGI_01237 Sequoiadendron giganteum HOM05D003958 ORTHO05D004864 1.9e-17 92.4 74 66.2
Os04g0319600 Oryza sativa ssp. japonica HOM05D003958 ORTHO05D004864 5.6e-17 90.9 74 68.9
Mapoly0053s0094 Marchantia polymorpha HOM05D003958 ORTHO05D004864 3.6e-16 88.2 74 60.8
arahy.Tifrunner.gnm1.ann1.FV4QAS Arachis hypogaea HOM05D003958 ORTHO05D004864 6.2e-16 87.4 63 77.8
Gohir.A03G000004 Gossypium hirsutum HOM05D003958 ORTHO05D004864 1.1e-15 86.7 66 69.7
Gohir.A10G243400 Gossypium hirsutum HOM05D003958 ORTHO05D004864 3.1e-15 85.1 66 69.7
AagrBONN_evm.TU.Sc2ySwM_344.690 Anthoceros agrestis HOM05D003958 ORTHO05D004864 6.8e-15 84.0 74 63.5
Pp3c18_5220 Physcomitrium patens HOM05D003958 ORTHO05D004864 6.8e-15 84.0 74 63.5
SMO361G0280 Selaginella moellendorffii HOM05D003958 ORTHO05D004864 6.8e-15 84.0 73 65.8
SMO361G0823 Selaginella moellendorffii HOM05D003958 ORTHO05D004864 6.8e-15 84.0 73 65.8
GSVIVG01032441001 Vitis vinifera HOM05D000462 ORTHO05D002607 2.0e-14 82.4 49 83.7
unitig_62.g23558 Utricularia gibba HOM05D003958 ORTHO05D004864 4.4e-14 81.3 49 83.7
CBR_g9110 Chara braunii HOM05D003958 ORTHO05D004864 2.2e-13 79.0 74 60.8
Gohir.A12G000201 Gossypium hirsutum HOM05D003958 ORTHO05D004864 2.7e-11 72.0 50 74.0
Hma1.2p1_0858F.1_g229230 Hydrangea macrophylla HOM05D003958 ORTHO05D004864 2.7e-11 72.0 59 66.1
Cre05.g244236 Chlamydomonas reinhardtii HOM05D003958 ORTHO05D004864 1.3e-10 69.7 73 54.8
MCO10G191 Micromonas commoda HOM05D003958 ORTHO05D004864 2.5e-09 65.5 62 61.3
Sopen06g018800 Solanum pennellii HOM05D003958 ORTHO05D004864 5.6e-09 64.3 44 75.0
Haze_26162 Corylus avellana HOM05D003958 ORTHO05D004864 8.1e-08 60.5 63 49.2
Gohir.1Z049410 Gossypium hirsutum HOM05D003958 ORTHO05D004864 1.8e-07 59.3 42 76.2
Gohir.A09G249500 Gossypium hirsutum HOM05D003958 ORTHO05D004864 5.3e-07 57.8 42 73.8
PRCOL_00006622 Prasinoderma coloniale HOM05D003958 ORTHO05D004864 1.2e-06 56.6 63 55.6
Gohir.D09G250100 Gossypium hirsutum HOM05D003958 ORTHO05D004864 2.0e-06 55.8 45 66.7
Gohir.D11G349300 Gossypium hirsutum HOM05D003958 ORTHO05D004864 2.0e-06 55.8 45 66.7
Gorai.006G274500 Gossypium raimondii HOM05D003958 ORTHO05D004864 2.0e-06 55.8 45 66.7
Gorai.007G380200 Gossypium raimondii HOM05D003958 ORTHO05D004864 3.4e-06 55.1 48 64.6
Gorai.013G008200 Gossypium raimondii HOM05D003958 ORTHO05D004864 3.4e-06 55.1 42 69.0
Gohir.D01G222101 Gossypium hirsutum HOM05D003958 ORTHO05D004864 4.4e-06 54.7 45 64.4
Gohir.D03G178200 Gossypium hirsutum HOM05D003958 ORTHO05D004864 5.8e-06 54.3 45 64.4
Gohir.A01G232100 Gossypium hirsutum HOM05D003958 ORTHO05D004864 7.6e-06 53.9 48 64.6
Gohir.D08G275428 Gossypium hirsutum HOM05D003958 ORTHO05D004864 9.9e-06 53.5 45 64.4
Gorai.004G293900 Gossypium raimondii HOM05D003958 ORTHO05D004864 9.9e-06 53.5 45 64.4


User provided reference genes

Program Settings