Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0019427 Camellia sinensis var. sinensis HOM05D002759 ORTHO05D003290 3.5e-139 498.4 283 100.0
CSS0015736 Camellia sinensis var. sinensis HOM05D002759 ORTHO05D003290 1.6e-54 217.2 117 90.6
Actinidia39057 Actinidia chinensis HOM05D002759 ORTHO05D003290 1.4e-39 167.5 118 72.0
Dinv24260 Davidia involucrata HOM05D002759 ORTHO05D003290 8.7e-37 158.3 118 67.8
Rhsim11G0131800 Rhododendron simsii HOM05D002759 ORTHO05D003290 6.9e-34 148.7 120 63.3
TAR381G0620 Trochodendron aralioides HOM05D002759 ORTHO05D003290 3.0e-29 133.3 115 56.5
QL02p098685 Quercus lobata HOM05D002759 ORTHO05D003290 1.5e-28 131.0 112 55.4
Lj9C311G18 Lonicera japonica HOM05D002759 ORTHO05D003290 5.6e-28 129.0 117 58.1
CiPaw.05G042600 Carya illinoinensis HOM05D002759 ORTHO05D003290 1.6e-27 127.5 112 56.2
Nn5g28049 Nelumbo nucifera HOM05D002759 ORTHO05D003290 4.8e-27 125.9 115 53.0
Haze_21022 Corylus avellana HOM05D002759 ORTHO05D003290 1.4e-26 124.4 112 55.4
Lsat_1_v5_gn_5_109460 Lactuca sativa HOM05D002759 ORTHO05D003290 1.0e-24 118.2 112 51.8
CAN.G1352.21 Capsicum annuum HOM05D002759 ORTHO05D003290 6.5e-24 115.5 121 47.9
DCAR_005626 Daucus carota HOM05D002759 ORTHO05D003290 1.1e-23 114.8 113 51.3
Manes.07G013200 Manihot esculenta HOM05D002759 ORTHO05D003290 1.4e-23 114.4 112 52.7
Nitab4.5_0004005g0050 Nicotiana tabacum HOM05D002759 ORTHO05D003290 2.5e-23 113.6 118 50.0
MD00G1166400 Malus domestica HOM05D002759 ORTHO05D003290 3.2e-23 113.2 116 50.9
PGR042G2027 Punica granatum HOM05D002759 ORTHO05D003290 7.1e-23 112.1 118 49.2
Prupe.1G563000 Prunus persica HOM05D002759 ORTHO05D003290 9.3e-23 111.7 120 50.8
SGA_v2.0_scaffold110G31284 Striga asiatica HOM05D002759 ORTHO05D003290 2.1e-22 110.5 181 37.0
Migut.B00666 Erythranthe guttata HOM05D002759 ORTHO05D003290 2.7e-22 110.2 112 48.2
MD15G1418900 Malus domestica HOM05D002759 ORTHO05D003290 2.7e-22 110.2 120 49.2
Nitab4.5_0005539g0020 Nicotiana tabacum HOM05D002759 ORTHO05D003290 6.0e-22 109.0 120 50.8
TWI59G0497 Tripterygium wilfordii HOM05D002759 ORTHO05D003290 7.9e-22 108.6 135 44.4
MELO3C011463.2 Cucumis melo HOM05D002759 ORTHO05D003290 1.3e-21 107.8 112 48.2
Peaxi162Scf00011g00138 Petunia axillaris HOM05D002759 ORTHO05D003290 1.8e-21 107.5 117 49.6
RcHm_v2.0_Chr7g0222331 Rosa chinensis HOM05D002759 ORTHO05D003290 2.3e-21 107.1 111 48.6
Sed0002146 Sechium edule HOM05D002759 ORTHO05D003290 3.0e-21 106.7 112 48.2
Eucgr.G00634 Eucalyptus grandis HOM05D002759 ORTHO05D003290 3.9e-21 106.3 111 50.5
CsaV3_6G032190 Cucumis sativus L. HOM05D002759 ORTHO05D003290 6.7e-21 105.5 112 47.3
Cpa.g.sc148.29 Carica papaya HOM05D002759 ORTHO05D003290 1.5e-20 104.4 112 50.9
ClCG08G010020 Citrullus lanatus HOM05D002759 ORTHO05D003290 2.5e-20 103.6 112 47.3
CANSAT11G0811 Cannabis sativa HOM05D002759 ORTHO05D003290 3.3e-20 103.2 118 45.8
PSO170G2118 Papaver somniferum HOM05D002759 ORTHO05D003290 4.3e-20 102.8 113 45.1
Solyc01g104490.3 Solanum lycopersicum HOM05D002759 ORTHO05D003290 4.3e-20 102.8 114 47.4
Sopen01g046990 Solanum pennellii HOM05D002759 ORTHO05D003290 7.4e-20 102.1 114 47.4
Cc02_g22260 Coffea canephora HOM05D002759 ORTHO05D003290 9.7e-20 101.7 111 45.9
PSO528G0214 Papaver somniferum HOM05D002759 ORTHO05D003290 1.6e-19 100.9 113 45.1
GSVIVG01023021001 Vitis vinifera HOM05D002759 ORTHO05D003290 8.2e-19 98.6 120 46.7
Potri.003G021700 Populus trichocarpa HOM05D002759 ORTHO05D003290 1.1e-18 98.2 113 46.0
SalBow5G5260 Salvia bowleyana HOM05D002759 ORTHO05D003290 2.4e-18 97.1 112 44.6
FvH4_3g35420 Fragaria vesca HOM05D002759 ORTHO05D003290 4.1e-18 96.3 111 44.1
Sabra03G0013600 Salix brachista HOM05D002759 ORTHO05D003290 4.1e-18 96.3 113 45.1
FAN11G2638 Fragaria x ananassa HOM05D002759 ORTHO05D003290 5.3e-18 95.9 111 44.1
FAN16G3014 Fragaria x ananassa HOM05D002759 ORTHO05D003290 5.3e-18 95.9 111 45.0
ECA234G1843 Erigeron canadensis HOM05D002759 ORTHO05D003290 9.0e-18 95.1 116 43.1
FAN25G1732 Fragaria x ananassa HOM05D002759 ORTHO05D003290 9.0e-18 95.1 111 44.1
arahy.Tifrunner.gnm1.ann1.VDG0KY Arachis hypogaea HOM05D002759 ORTHO05D003290 4.5e-17 92.8 131 39.7
AUR62035559 Chenopodium quinoa HOM05D002759 ORTHO05D003290 1.3e-16 91.3 120 40.8
EL10Ac3g05252 Beta vulgaris HOM05D002759 ORTHO05D003290 1.7e-16 90.9 117 42.7
Glyma.08G184200 Glycine max HOM05D002759 ORTHO05D003290 1.7e-16 90.9 113 43.4
HanXRQChr10g0290421 Helianthus annuus HOM05D002759 ORTHO05D003290 2.9e-16 90.1 112 42.0
Lalb_Chr20g0123401 Lupinus albus HOM05D002759 ORTHO05D003290 6.5e-16 89.0 112 41.1
Atru.chr6.1078 Acer truncatum HOM05D002759 ORTHO05D003290 1.1e-15 88.2 113 39.8
arahy.Tifrunner.gnm1.ann1.YVTC7U Arachis hypogaea HOM05D002759 ORTHO05D003290 1.1e-15 88.2 131 38.9
Aqoxy3G00692 Aquilegia oxysepala HOM05D002759 ORTHO05D003290 1.4e-15 87.8 117 41.9
AUR62006068 Chenopodium quinoa HOM05D002759 ORTHO05D003290 2.5e-15 87.0 118 39.8
FvH4_5g29932 Fragaria vesca HOM05D002759 ORTHO05D003290 3.2e-15 86.7 116 40.5
THA.LOC104814230 Tarenaya hassleriana HOM05D002759 ORTHO05D003290 3.2e-15 86.7 114 40.4
Medtr2g007790 Medicago truncatula HOM05D002759 ORTHO05D003290 4.2e-15 86.3 131 38.9
Atru.chr6.1027 Acer truncatum HOM05D002759 ORTHO05D003290 9.4e-15 85.1 113 38.9
TPR.G2149 Trifolium pratense HOM05D002759 ORTHO05D003290 1.2e-14 84.7 114 39.5
Gorai.002G207900 Gossypium raimondii HOM05D002759 ORTHO05D003290 1.6e-14 84.3 139 35.3
FAN18G4196 Fragaria x ananassa HOM05D002759 ORTHO05D003290 2.7e-14 83.6 111 41.4
Ca_00091_v3 Cicer arietinum L. HOM05D002759 ORTHO05D003290 3.6e-14 83.2 113 38.9
Ca_29930_v3 Cicer arietinum L. HOM05D002759 ORTHO05D003290 3.6e-14 83.2 113 38.9
Gohir.D01G167366 Gossypium hirsutum HOM05D002759 ORTHO05D003290 4.6e-14 82.8 107 40.2
Ah.07g205390 Amaranthus hybridus HOM05D002759 ORTHO05D003290 6.1e-14 82.4 126 36.5
Gohir.A01G176550 Gossypium hirsutum HOM05D002759 ORTHO05D003290 6.1e-14 82.4 107 39.3
Hund17372 Selenicereus undatus HOM05D002759 ORTHO05D003290 1.0e-13 81.6 184 34.2
COL.COLO4_08439 Corchorus olitorius HOM05D002759 ORTHO05D003290 1.4e-13 81.3 108 42.6
CsaV3_6G032170 Cucumis sativus L. HOM05D002759 ORTHO05D003290 2.3e-13 80.5 113 41.6
CARHR290780 Cardamine hirsuta HOM05D002759 ORTHO05D003290 3.0e-13 80.1 112 36.6
Aa31LG6G5020 Aethionema arabicum HOM05D002759 ORTHO05D003290 6.7e-13 79.0 114 34.2
Lj6g0007416 Lotus japonicus HOM05D002759 ORTHO05D003290 8.8e-13 78.6 145 33.1
Medtr7g023120 Medicago truncatula HOM05D002759 ORTHO05D003290 1.5e-12 77.8 113 42.5
AT4G22970 Arabidopsis thaliana HOM05D002759 ORTHO05D003290 2.0e-12 77.4 112 35.7
Carub.0007s1830 Capsella rubella HOM05D002759 ORTHO05D003290 3.3e-12 76.6 112 34.8
Psat1g219920 Pisum sativum HOM05D002759 ORTHO05D003290 3.3e-12 76.6 111 38.7
Sp7g21060 Schrenkiella parvula HOM05D002759 ORTHO05D003290 4.3e-12 76.3 112 35.7
BcaC09g51048 Brassica carinata HOM05D002759 ORTHO05D003290 5.7e-12 75.9 112 34.8
BolC1t01691H Brassica oleracea HOM05D002759 ORTHO05D003290 5.7e-12 75.9 112 34.8
FAN04G0662 Fragaria x ananassa HOM05D002759 ORTHO05D003290 5.7e-12 75.9 92 43.5
Lj1g0017629 Lotus japonicus HOM05D002759 ORTHO05D003290 7.4e-12 75.5 145 31.7
Hund11642 Selenicereus undatus HOM05D002759 ORTHO05D003290 9.7e-12 75.1 118 38.1
Aqoxy3G00698 Aquilegia oxysepala HOM05D002759 ORTHO05D003290 1.3e-11 74.7 110 38.2
C01p17510 Brassica napus HOM05D002759 ORTHO05D003290 1.3e-11 74.7 112 34.8
FAN08G0368 Fragaria x ananassa HOM05D006182 ORTHO05D007236 1.7e-11 74.3 93 45.2
A01p14240 Brassica napus HOM05D002759 ORTHO05D003290 2.2e-11 73.9 112 33.9
Duzib052G0069 Durio zibethinus HOM05D002759 ORTHO05D003290 2.2e-11 73.9 107 38.3
Phvul.006G212401 Phaseolus vulgaris HOM05D002759 ORTHO05D003290 2.2e-11 73.9 110 36.4
Aqoxy7G02142 Aquilegia oxysepala HOM05D002759 ORTHO05D003290 3.7e-11 73.2 108 37.0
BraA01t01371Z Brassica rapa HOM05D002759 ORTHO05D003290 3.7e-11 73.2 112 33.0
Thhalv10024187m.g Eutrema salsugineum HOM05D002759 ORTHO05D003290 4.8e-11 72.8 112 33.9
AL7G30550 Arabidopsis lyrata HOM05D002759 ORTHO05D003290 1.4e-10 71.2 112 33.0
C07p52320 Brassica napus HOM05D002759 ORTHO05D003290 2.4e-10 70.5 112 34.8
BolC7t45725H Brassica oleracea HOM05D002759 ORTHO05D003290 2.4e-10 70.5 112 34.8
A03p53910 Brassica napus HOM05D002759 ORTHO05D003290 3.1e-10 70.1 112 35.7
BraA03t14460Z Brassica rapa HOM05D002759 ORTHO05D003290 3.1e-10 70.1 112 35.7
Ciclev10000008m.g Citrus clementina HOM05D002759 ORTHO05D003290 2.6e-09 67.0 112 35.7
Thhalv10029518m.g Eutrema salsugineum HOM05D002759 ORTHO05D003290 4.5e-09 66.2 112 33.9
Atru.chr10.692 Acer truncatum HOM05D002759 ORTHO05D003290 5.9e-09 65.9 109 34.9
HPP92_009112 Vanilla planifolia HOM05D002759 ORTHO05D003290 2.2e-08 63.9 98 33.7
FAN13G3161 Fragaria x ananassa HOM05D003050 ORTHO05D003513 5.5e-07 59.3 99 34.3
BcaB05g23798 Brassica carinata HOM05D002759 ORTHO05D003290 9.4e-07 58.5 112 30.4
CDE09G0711 Ceratophyllum demersum HOM05D002759 ORTHO05D003290 2.1e-06 57.4 119 28.6


User provided reference genes

Program Settings