Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0019423 Camellia sinensis var. sinensis HOM05D004117 ORTHO05D004520 1.4e-56 222.6 104 100.0
CSS0038404 Camellia sinensis var. sinensis HOM05D004117 ORTHO05D004520 2.2e-38 162.2 107 71.0
CSS0026162 Camellia sinensis var. sinensis HOM05D004117 ORTHO05D004520 6.0e-36 154.1 91 79.1
Thecc.01G156100 Theobroma cacao HOM05D004117 ORTHO05D004520 3.9e-27 124.8 77 70.1
Dinv11422 Davidia involucrata HOM05D004117 ORTHO05D004520 2.5e-26 122.1 85 68.2
COL.COLO4_33652 Corchorus olitorius HOM05D004117 ORTHO05D004520 4.3e-26 121.3 90 63.3
Dinv03089 Davidia involucrata HOM05D004117 ORTHO05D004520 4.3e-26 121.3 87 67.8
Atru.chr6.3571 Acer truncatum HOM05D004117 ORTHO05D004520 1.3e-25 119.8 91 60.4
Actinidia11177 Actinidia chinensis HOM05D004117 ORTHO05D004520 2.8e-25 118.6 91 60.4
Hma1.2p1_0178F.1_g078380 Hydrangea macrophylla HOM05D004117 ORTHO05D004520 2.8e-25 118.6 86 65.1
Peaxi162Scf00154g01022 Petunia axillaris HOM05D004117 ORTHO05D004520 2.8e-25 118.6 91 60.4
Solyc07g055700.2 Solanum lycopersicum HOM05D004117 ORTHO05D004520 3.7e-25 118.2 91 58.2
TAR030G0002 Trochodendron aralioides HOM05D004117 ORTHO05D004520 4.8e-25 117.9 86 66.3
vmacro12419 Vaccinium macrocarpon HOM05D004117 ORTHO05D004520 6.2e-25 117.5 89 61.8
Sopen07g029060 Solanum pennellii HOM05D004117 ORTHO05D004520 8.2e-25 117.1 91 57.1
A10p05130 Brassica napus HOM05D004117 ORTHO05D004520 1.1e-24 116.7 87 63.2
C05p04720 Brassica napus HOM05D004117 ORTHO05D004520 1.1e-24 116.7 87 63.2
BolC5t29244H Brassica oleracea HOM05D004117 ORTHO05D004520 1.1e-24 116.7 87 63.2
BraA10t42778Z Brassica rapa HOM05D004117 ORTHO05D004520 1.1e-24 116.7 87 63.2
Lj1C629G7 Lonicera japonica HOM05D004117 ORTHO05D004520 1.4e-24 116.3 90 61.1
THA.LOC104800830 Tarenaya hassleriana HOM05D004117 ORTHO05D004520 1.4e-24 116.3 84 64.3
Duzib264G0691 Durio zibethinus HOM05D004117 ORTHO05D004520 1.8e-24 115.9 90 61.1
Sabra06G0216200 Salix brachista HOM05D004117 ORTHO05D004520 1.8e-24 115.9 83 60.2
CAN.G803.15 Capsicum annuum HOM05D004117 ORTHO05D004520 3.1e-24 115.2 90 60.0
Haze_13437 Corylus avellana HOM05D013182 ORTHO05D004520 3.1e-24 115.2 97 56.7
Manes.01G129950 Manihot esculenta HOM05D004117 ORTHO05D004520 4.1e-24 114.8 84 64.3
Potri.006G278700 Populus trichocarpa HOM05D004117 ORTHO05D004520 4.1e-24 114.8 77 64.9
CiPaw.04G134900 Carya illinoinensis HOM05D004117 ORTHO05D004520 5.3e-24 114.4 90 57.8
Lsat_1_v5_gn_4_26681 Lactuca sativa HOM05D004117 ORTHO05D004520 6.9e-24 114.0 89 59.6
Peaxi162Scf00807g00047 Petunia axillaris HOM05D004117 ORTHO05D004520 6.9e-24 114.0 87 63.2
Rhsim06G0124300 Rhododendron simsii HOM05D004117 ORTHO05D004520 6.9e-24 114.0 89 59.6
BcaB03g13416 Brassica carinata HOM05D004117 ORTHO05D004520 9.0e-24 113.6 87 60.9
ECA234G3208 Erigeron canadensis HOM05D004117 ORTHO05D004520 9.0e-24 113.6 84 60.7
Thhalv10007752m.g Eutrema salsugineum HOM05D004117 ORTHO05D004520 9.0e-24 113.6 84 63.1
Nitab4.5_0003479g0010 Nicotiana tabacum HOM05D004117 ORTHO05D004520 9.0e-24 113.6 74 70.3
AL1G16480 Arabidopsis lyrata HOM05D004117 ORTHO05D004520 2.6e-23 112.1 84 63.1
CANSAT64G1854 Cannabis sativa HOM05D004117 ORTHO05D004520 2.6e-23 112.1 105 53.3
Carub.0001s0583 Capsella rubella HOM05D004117 ORTHO05D004520 3.4e-23 111.7 84 63.1
Manes.02G087500 Manihot esculenta HOM05D004117 ORTHO05D004520 3.4e-23 111.7 91 58.2
Sp1g05230 Schrenkiella parvula HOM05D004117 ORTHO05D004520 3.4e-23 111.7 84 61.9
Aa31LG1G7530 Aethionema arabicum HOM05D004117 ORTHO05D004520 4.5e-23 111.3 82 63.4
BcaC07g36811 Brassica carinata HOM05D004117 ORTHO05D004520 4.5e-23 111.3 82 63.4
C08p02610 Brassica napus HOM05D004117 ORTHO05D004520 4.5e-23 111.3 82 63.4
BolC8t47054H Brassica oleracea HOM05D004117 ORTHO05D004520 4.5e-23 111.3 82 63.4
DCAR_014033 Daucus carota HOM05D004117 ORTHO05D004520 4.5e-23 111.3 84 57.1
QL08p042899 Quercus lobata HOM05D004117 ORTHO05D004520 4.5e-23 111.3 86 60.5
GSVIVG01020780001 Vitis vinifera HOM05D004117 ORTHO05D004520 4.5e-23 111.3 89 59.6
AT1G06470 Arabidopsis thaliana HOM05D004117 ORTHO05D004520 5.8e-23 110.9 77 66.2
Duzib147G1030 Durio zibethinus HOM05D004117 ORTHO05D004520 7.6e-23 110.5 86 60.5
HanXRQChr01g0028621 Helianthus annuus HOM05D004117 ORTHO05D004520 7.6e-23 110.5 84 61.9
Oeu032129.1 Olea europaea HOM05D004117 ORTHO05D004520 1.3e-22 109.8 91 59.3
Sc12g0003810 Simmondsia chinensis HOM05D004117 ORTHO05D004520 1.7e-22 109.4 84 59.5
CARHR006080 Cardamine hirsuta HOM05D004117 ORTHO05D004520 2.2e-22 109.0 84 61.9
PSO541G2160 Papaver somniferum HOM05D004117 ORTHO05D004520 2.2e-22 109.0 76 65.8
PSO675G6070 Papaver somniferum HOM05D004117 ORTHO05D004520 2.2e-22 109.0 76 65.8
Sc21g0004310 Simmondsia chinensis HOM05D004117 ORTHO05D004520 2.2e-22 109.0 87 56.3
Ciclev10017482m.g Citrus clementina HOM05D004117 ORTHO05D004520 2.9e-22 108.6 84 59.5
Gohir.A11G059900 Gossypium hirsutum HOM05D004117 ORTHO05D004520 3.8e-22 108.2 83 61.4
Nitab4.5_0005259g0030 Nicotiana tabacum HOM05D004117 ORTHO05D004520 3.8e-22 108.2 90 56.7
SGA_v2.0_scaffold46G17443 Striga asiatica HOM05D004117 ORTHO05D004520 3.8e-22 108.2 93 55.9
Thecc.07G168800 Theobroma cacao HOM05D004117 ORTHO05D004520 3.8e-22 108.2 76 64.5
SalBow7G1867 Salvia bowleyana HOM05D004117 ORTHO05D004520 5.0e-22 107.8 78 65.4
SGA_v2.0_scaffold9G04867 Striga asiatica HOM05D004117 ORTHO05D004520 6.5e-22 107.5 85 61.2
A08p35950 Brassica napus HOM05D004117 ORTHO05D004520 1.1e-21 106.7 82 61.0
BraA08t35503Z Brassica rapa HOM05D004117 ORTHO05D004520 1.1e-21 106.7 82 61.0
Eucgr.A01947 Eucalyptus grandis HOM05D004117 ORTHO05D004520 1.1e-21 106.7 84 57.1
Nn3g21103 Nelumbo nucifera HOM05D004117 ORTHO05D004520 1.1e-21 106.7 76 68.4
Oeu028661.1 Olea europaea HOM05D004117 ORTHO05D004520 1.4e-21 106.3 87 59.8
Aqoxy1G01993 Aquilegia oxysepala HOM05D004117 ORTHO05D004520 2.5e-21 105.5 84 60.7
DCAR_010149 Daucus carota HOM05D004117 ORTHO05D004520 2.5e-21 105.5 93 52.7
Gohir.D11G064000 Gossypium hirsutum HOM05D004117 ORTHO05D004520 2.5e-21 105.5 83 60.2
Gorai.007G069200 Gossypium raimondii HOM05D004117 ORTHO05D004520 2.5e-21 105.5 83 60.2
Sopen12g006350 Solanum pennellii HOM05D004117 ORTHO05D004520 2.5e-21 105.5 84 59.5
MD09G1233800 Malus domestica HOM05D004117 ORTHO05D004520 3.2e-21 105.1 94 54.3
Solyc12g010990.3 Solanum lycopersicum HOM05D004117 ORTHO05D004520 3.2e-21 105.1 84 59.5
RcHm_v2.0_Chr2g0131361 Rosa chinensis HOM05D004117 ORTHO05D004520 4.2e-21 104.8 90 53.3
HanXRQChr04g0105921 Helianthus annuus HOM05D004117 ORTHO05D004520 5.5e-21 104.4 85 57.6
CAN.G486.15 Capsicum annuum HOM05D004117 ORTHO05D004520 9.3e-21 103.6 89 58.4
FvH4_6g27890 Fragaria vesca HOM05D004117 ORTHO05D004520 9.3e-21 103.6 90 52.2
FAN02G0254 Fragaria x ananassa HOM05D004117 ORTHO05D004520 9.3e-21 103.6 90 52.2
FAN05G5128 Fragaria x ananassa HOM05D004117 ORTHO05D004520 9.3e-21 103.6 90 52.2
FAN09G0194 Fragaria x ananassa HOM05D004117 ORTHO05D004520 9.3e-21 103.6 90 52.2
FAN14G3113 Fragaria x ananassa HOM05D004117 ORTHO05D004520 9.3e-21 103.6 90 52.2
SalBow7G2879 Salvia bowleyana HOM05D004117 ORTHO05D004520 9.3e-21 103.6 77 66.2
arahy.Tifrunner.gnm1.ann1.A5IPPM Arachis hypogaea HOM05D004117 ORTHO05D004520 1.2e-20 103.2 84 54.8
arahy.Tifrunner.gnm1.ann1.X0GQC6 Arachis hypogaea HOM05D004117 ORTHO05D004520 1.6e-20 102.8 84 54.8
Prupe.3G108900 Prunus persica HOM05D004117 ORTHO05D004520 2.1e-20 102.4 106 50.0
Nitab4.5_0003133g0050 Nicotiana tabacum HOM05D004117 ORTHO05D004520 2.7e-20 102.1 122 43.4
ClCG09G020800 Citrullus lanatus HOM05D004117 ORTHO05D004520 4.6e-20 101.3 84 54.8
Psat4g191560 Pisum sativum HOM05D004117 ORTHO05D004520 4.6e-20 101.3 92 47.8
Migut.M00208 Erythranthe guttata HOM05D004117 ORTHO05D004520 6.1e-20 100.9 77 61.0
Lsat_1_v5_gn_8_31821 Lactuca sativa HOM05D004117 ORTHO05D004520 6.1e-20 100.9 77 59.7
Hund07729 Selenicereus undatus HOM05D004117 ORTHO05D004520 7.9e-20 100.5 89 53.9
CsaV3_6G037880 Cucumis sativus L. HOM05D004117 ORTHO05D004520 1.3e-19 99.8 84 54.8
Sed0017214 Sechium edule HOM05D004117 ORTHO05D004520 1.3e-19 99.8 84 53.6
Ah.01g016090 Amaranthus hybridus HOM05D004117 ORTHO05D004520 1.8e-19 99.4 85 52.9
HanXRQChr12g0367511 Helianthus annuus HOM05D004117 ORTHO05D004520 1.8e-19 99.4 94 52.1
MD17G1230200 Malus domestica HOM05D004117 ORTHO05D004520 1.8e-19 99.4 77 58.4
Medtr8g016090 Medicago truncatula HOM05D004117 ORTHO05D004520 1.8e-19 99.4 92 47.8
Gorai.012G044300 Gossypium raimondii HOM05D004117 ORTHO05D004520 2.3e-19 99.0 83 57.8
Lalb_Chr10g0106881 Lupinus albus HOM05D004117 ORTHO05D004520 2.3e-19 99.0 77 55.8
ECA233G4030 Erigeron canadensis HOM05D004117 ORTHO05D004520 3.0e-19 98.6 84 58.3
Gohir.A05G376700 Gossypium hirsutum HOM05D004117 ORTHO05D004520 3.0e-19 98.6 83 57.8
Gohir.D04G039266 Gossypium hirsutum HOM05D004117 ORTHO05D004520 3.0e-19 98.6 83 57.8
Lalb_Chr15g0080421 Lupinus albus HOM05D004117 ORTHO05D004520 3.0e-19 98.6 91 49.5
TPR.G22233 Trifolium pratense HOM05D004117 ORTHO05D004520 5.1e-19 97.8 77 54.5
arahy.Tifrunner.gnm1.ann1.EL27YX Arachis hypogaea HOM05D004117 ORTHO05D004520 6.7e-19 97.4 76 59.2
EL10Ac9g21032 Beta vulgaris HOM05D004117 ORTHO05D004520 6.7e-19 97.4 77 58.4
Lj6g0002139 Lotus japonicus HOM05D004117 ORTHO05D004520 8.7e-19 97.1 77 55.8
arahy.Tifrunner.gnm1.ann1.S8R0TP Arachis hypogaea HOM05D004117 ORTHO05D004520 1.1e-18 96.7 76 59.2
Migut.H02117 Erythranthe guttata HOM05D004117 ORTHO05D004520 1.1e-18 96.7 89 55.1
Phvul.006G038200 Phaseolus vulgaris HOM05D004117 ORTHO05D004520 1.1e-18 96.7 77 55.8
PGR042G1715 Punica granatum HOM05D004117 ORTHO05D004520 1.1e-18 96.7 77 59.7
Glyma.09G101300 Glycine max HOM05D004117 ORTHO05D004520 5.7e-18 94.4 84 50.0
VMungo0540G1454 Vigna mungo HOM05D004117 ORTHO05D004520 5.7e-18 94.4 77 53.2
Glyma.18G102500 Glycine max HOM05D004117 ORTHO05D004520 2.8e-17 92.0 84 48.8
Nn6g34497 Nelumbo nucifera HOM05D004117 ORTHO05D004520 1.4e-16 89.7 87 50.6
Nitab4.5_0000990g0060 Nicotiana tabacum HOM05D004117 ORTHO05D004520 9.0e-16 87.0 76 55.3
Pp3c3_5740 Physcomitrium patens HOM05D004117 ORTHO05D004520 9.0e-16 87.0 76 52.6
BcaB02g06797 Brassica carinata HOM05D004117 ORTHO05D004520 3.4e-15 85.1 49 73.5
Os06g0153200 Oryza sativa ssp. japonica HOM05D004117 ORTHO05D004520 1.0e-14 83.6 91 47.3
CDE09G0584 Ceratophyllum demersum HOM05D004117 ORTHO05D004520 1.7e-14 82.8 81 48.1
HPP92_000571 Vanilla planifolia HOM05D004117 ORTHO05D004520 6.5e-14 80.9 98 42.9
HPP92_009031 Vanilla planifolia HOM05D004117 ORTHO05D004520 1.2e-12 76.6 84 44.0
Zm00001eb376680 Zea mays HOM05D004117 ORTHO05D004520 3.6e-12 75.1 85 44.7
Mapoly0038s0060 Marchantia polymorpha HOM05D004117 ORTHO05D004520 6.1e-12 74.3 76 48.7
Pp3c2_29630 Physcomitrium patens HOM05D004117 ORTHO05D004520 1.4e-11 73.2 56 51.8
Zm00001eb358520 Zea mays HOM05D004117 ORTHO05D004520 1.1e-10 70.1 71 50.7
SMO358G0570 Selaginella moellendorffii HOM05D004117 ORTHO05D004520 1.5e-10 69.7 76 44.7
Os01g0749900 Oryza sativa ssp. japonica HOM05D004117 ORTHO05D004520 5.3e-08 61.2 65 46.2
Zm00001eb370980 Zea mays HOM05D004117 ORTHO05D004520 2.6e-07 58.9 65 46.2
Zm00001eb153320 Zea mays HOM05D004117 ORTHO05D004520 3.4e-07 58.5 65 46.2
SEGI_15129 Sequoiadendron giganteum HOM05D004117 ORTHO05D004520 2.9e-06 55.5 97 35.1
MBI06_g18691_MAGBIO Magnolia biondii HOM05D004117 ORTHO05D004520 5.0e-06 54.7 40 65.0


User provided reference genes

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