Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0019413 Camellia sinensis var. sinensis HOM05D007373 ORTHO05D009192 5.4e-58 227.3 100 100.0
CSS0040934 Camellia sinensis var. sinensis HOM05D007373 ORTHO05D009192 4.6e-57 224.2 100 99.0
GSVIVG01025730001 Vitis vinifera HOM05D007373 ORTHO05D009192 5.2e-53 210.7 98 91.8
Thecc.05G065600 Theobroma cacao HOM05D007373 ORTHO05D009192 1.2e-52 209.5 98 92.9
MD04G1093900 Malus domestica HOM05D007373 ORTHO05D009192 2.2e-51 205.3 98 89.8
Prupe.6G232500 Prunus persica HOM05D007373 ORTHO05D009192 2.9e-51 204.9 98 89.8
TAR629G0480 Trochodendron aralioides HOM05D007373 ORTHO05D009192 3.7e-51 204.5 98 87.8
PGSC0003DMG400003861 Solanum tuberosum HOM05D007373 ORTHO05D009192 4.9e-51 204.1 98 88.8
MD12G1113600 Malus domestica HOM05D007373 ORTHO05D009192 6.4e-51 203.8 98 88.8
PGR004G1687 Punica granatum HOM05D007373 ORTHO05D009192 1.1e-50 203.0 98 88.8
Sed0025593 Sechium edule HOM05D007373 ORTHO05D009192 1.4e-50 202.6 98 87.8
Solyc09g008155.1 Solanum lycopersicum HOM05D007373 ORTHO05D009192 1.4e-50 202.6 98 87.8
Sopen09g002960 Solanum pennellii HOM05D007373 ORTHO05D009192 1.4e-50 202.6 98 87.8
ClCG10G020140 Citrullus lanatus HOM05D007373 ORTHO05D009192 3.2e-50 201.4 98 87.8
Dinv35786 Davidia involucrata HOM05D007373 ORTHO05D009192 3.2e-50 201.4 98 89.8
TAR374G0263 Trochodendron aralioides HOM05D007373 ORTHO05D009192 4.1e-50 201.1 98 85.7
Eucgr.A01684 Eucalyptus grandis HOM05D007373 ORTHO05D009192 7.0e-50 200.3 98 86.7
CANSAT80G1991 Cannabis sativa HOM05D007373 ORTHO05D009192 9.2e-50 199.9 98 88.8
Gohir.A09G147200 Gossypium hirsutum HOM05D007373 ORTHO05D009192 1.2e-49 199.5 98 86.7
Gohir.D09G142800 Gossypium hirsutum HOM05D007373 ORTHO05D009192 1.2e-49 199.5 98 86.7
Gorai.006G164300 Gossypium raimondii HOM05D007373 ORTHO05D009192 1.2e-49 199.5 98 86.7
CiPaw.09G173000 Carya illinoinensis HOM05D007373 ORTHO05D009192 1.6e-49 199.1 100 86.0
Peaxi162Scf00701g00211 Petunia axillaris HOM05D007373 ORTHO05D009192 1.6e-49 199.1 98 85.7
Nn3g17468 Nelumbo nucifera HOM05D007373 ORTHO05D009192 2.7e-49 198.4 98 83.7
QL07p043588 Quercus lobata HOM05D007373 ORTHO05D009192 2.7e-49 198.4 98 86.7
Atru.chr8.1817 Acer truncatum HOM05D007373 ORTHO05D009192 4.6e-49 197.6 100 84.0
Migut.J00499 Erythranthe guttata HOM05D007373 ORTHO05D009192 4.6e-49 197.6 98 87.8
Nitab4.5_0002632g0030 Nicotiana tabacum HOM05D007373 ORTHO05D009192 7.8e-49 196.8 98 85.7
Ciclev10013190m.g Citrus clementina HOM05D007373 ORTHO05D009192 3.9e-48 194.5 98 83.7
Duzib128G1309 Durio zibethinus HOM05D007373 ORTHO05D009192 5.1e-48 194.1 98 83.7
CAN.G900.38 Capsicum annuum HOM05D007373 ORTHO05D009192 8.6e-48 193.4 98 83.7
Potri.016G092100 Populus trichocarpa HOM05D007373 ORTHO05D009192 8.6e-48 193.4 98 84.7
Sc02g0001650 Simmondsia chinensis HOM05D007373 ORTHO05D009192 8.6e-48 193.4 98 83.7
CARHR084370 Cardamine hirsuta HOM05D007373 ORTHO05D009192 1.9e-47 192.2 98 87.8
Peaxi162Scf00311g00515 Petunia axillaris HOM05D007373 ORTHO05D009192 1.9e-47 192.2 95 87.4
RcHm_v2.0_Chr3g0470161 Rosa chinensis HOM05D007373 ORTHO05D009192 1.9e-47 192.2 98 83.7
AL3G21090 Arabidopsis lyrata HOM05D007373 ORTHO05D009192 2.5e-47 191.8 98 87.8
AT3G09860 Arabidopsis thaliana HOM05D007373 ORTHO05D009192 2.5e-47 191.8 98 87.8
BcaC05g29708 Brassica carinata HOM05D007373 ORTHO05D009192 2.5e-47 191.8 98 87.8
Cc06_g04200 Coffea canephora HOM05D007373 ORTHO05D009192 4.3e-47 191.0 98 83.7
EL10Ac7g16624 Beta vulgaris HOM05D007373 ORTHO05D009192 5.6e-47 190.7 98 83.7
BcaC05g29497 Brassica carinata HOM05D007373 ORTHO05D009192 9.5e-47 189.9 98 86.7
A05p39190 Brassica napus HOM05D007373 ORTHO05D009192 9.5e-47 189.9 98 86.7
C05p58240 Brassica napus HOM05D007373 ORTHO05D009192 9.5e-47 189.9 98 86.7
BolC5t34478H Brassica oleracea HOM05D007373 ORTHO05D009192 9.5e-47 189.9 98 86.7
BraA05t22708Z Brassica rapa HOM05D007373 ORTHO05D009192 9.5e-47 189.9 98 86.7
Carub.0003s0895 Capsella rubella HOM05D007373 ORTHO05D009192 9.5e-47 189.9 98 86.7
Cfa017601 Carpinus fangiana HOM05D007373 ORTHO05D009192 9.5e-47 189.9 98 83.7
COL.COLO4_26968 Corchorus olitorius HOM05D007373 ORTHO05D009192 9.5e-47 189.9 98 82.7
MBI16_g10844_MAGBIO Magnolia biondii HOM05D007373 ORTHO05D009192 9.5e-47 189.9 98 81.6
Thhalv10022256m.g Eutrema salsugineum HOM05D007373 ORTHO05D009192 1.2e-46 189.5 98 86.7
Lj5g0010566 Lotus japonicus HOM05D007373 ORTHO05D009192 1.2e-46 189.5 98 81.6
PSO017G7276 Papaver somniferum HOM05D007373 ORTHO05D009192 1.2e-46 189.5 98 81.6
PSO478G2855 Papaver somniferum HOM05D007373 ORTHO05D009192 1.2e-46 189.5 98 81.6
Sabra16G0097700 Salix brachista HOM05D007373 ORTHO05D009192 1.2e-46 189.5 98 82.7
Sp3g08200 Schrenkiella parvula HOM05D007373 ORTHO05D009192 3.6e-46 188.0 98 85.7
THA.LOC104816346 Tarenaya hassleriana HOM05D007373 ORTHO05D009192 1.4e-45 186.0 98 82.7
Dinv37313 Davidia involucrata HOM05D007373 ORTHO05D009192 4.0e-45 184.5 85 92.9
Lsat_1_v5_gn_6_25141 Lactuca sativa HOM05D007373 ORTHO05D009192 4.0e-45 184.5 98 78.6
DCAR_020820 Daucus carota HOM05D007373 ORTHO05D009192 1.2e-44 183.0 98 80.6
Glyma.10G056800 Glycine max HOM05D007373 ORTHO05D009192 1.5e-44 182.6 98 77.6
unitig_27.g25376 Utricularia gibba HOM05D007373 ORTHO05D009192 2.6e-44 181.8 98 80.6
TWI53G0924 Tripterygium wilfordii HOM05D007373 ORTHO05D009192 3.4e-44 181.4 98 79.6
TWI74G0510 Tripterygium wilfordii HOM05D007373 ORTHO05D009192 5.8e-44 180.6 98 80.6
FvH4_6g16300 Fragaria vesca HOM05D007373 ORTHO05D009192 7.5e-44 180.3 98 76.5
FAN14G5019 Fragaria x ananassa HOM05D007373 ORTHO05D009192 7.5e-44 180.3 98 76.5
Phvul.007G219900 Phaseolus vulgaris HOM05D007373 ORTHO05D009192 9.9e-44 179.9 98 78.6
FAN02G4061 Fragaria x ananassa HOM05D007373 ORTHO05D009192 1.3e-43 179.5 98 75.5
Cpa.g.sc56.30 Carica papaya HOM05D007373 ORTHO05D009192 1.7e-43 179.1 88 87.5
Glyma.13G143300 Glycine max HOM05D007373 ORTHO05D009192 6.4e-43 177.2 97 76.3
CDE10G0795 Ceratophyllum demersum HOM05D007373 ORTHO05D009192 1.1e-42 176.4 100 74.0
Manes.08G010000 Manihot esculenta HOM05D007373 ORTHO05D009192 1.1e-42 176.4 98 77.6
CDE10G1255 Ceratophyllum demersum HOM05D007373 ORTHO05D009192 1.4e-42 176.0 100 73.0
ATR0177G027 Amborella trichopoda HOM05D007373 ORTHO05D009192 2.4e-42 175.3 98 78.6
ECA233G3432 Erigeron canadensis HOM05D007373 ORTHO05D009192 2.4e-42 175.3 98 72.4
HanXRQChr02g0051631 Helianthus annuus HOM05D007373 ORTHO05D009192 5.4e-42 174.1 98 73.5
Aqoxy3G03675 Aquilegia oxysepala HOM05D007373 ORTHO05D009192 7.1e-42 173.7 100 74.0
HanXRQChr13g0401061 Helianthus annuus HOM05D007373 ORTHO05D009192 2.1e-41 172.2 98 72.4
CsaV3_3G035970 Cucumis sativus L. HOM05D007373 ORTHO05D009192 2.3e-40 168.7 98 71.4
Lalb_Chr02g0155881 Lupinus albus HOM05D007373 ORTHO05D009192 6.6e-40 167.2 98 73.5
Lalb_Chr02g0155991 Lupinus albus HOM05D007373 ORTHO05D009192 6.6e-40 167.2 98 73.5
Duzib106G1098 Durio zibethinus HOM05D007373 ORTHO05D009192 8.6e-40 166.8 132 59.1
AUR62040359 Chenopodium quinoa HOM05D007373 ORTHO05D009192 3.3e-39 164.9 98 75.5
AUR62042495 Chenopodium quinoa HOM05D007373 ORTHO05D009192 3.3e-39 164.9 98 75.5
Medtr1g063360 Medicago truncatula HOM05D007373 ORTHO05D009192 1.4e-37 159.5 99 68.7
BolC1t05427H Brassica oleracea HOM05D007373 ORTHO05D009192 5.2e-37 157.5 86 82.6
Actinidia28903 Actinidia chinensis HOM05D007373 ORTHO05D009192 3.4e-36 154.8 98 66.3
Actinidia08775 Actinidia chinensis HOM05D007373 ORTHO05D009192 5.8e-36 154.1 98 65.3
TPR.G6865 Trifolium pratense HOM05D007373 ORTHO05D009192 4.9e-35 151.0 99 67.7
Aa31LG3G2330 Aethionema arabicum HOM05D007373 ORTHO05D009192 6.4e-35 150.6 168 47.6
Psat6g073000 Pisum sativum HOM05D007373 ORTHO05D009192 7.1e-34 147.1 99 63.6
SGA_v2.0_scaffold40G15517 Striga asiatica HOM05D007373 ORTHO05D009192 1.9e-31 139.0 109 56.9
Nitab4.5_0000578g0180 Nicotiana tabacum HOM05D007373 ORTHO05D009192 1.3e-30 136.3 71 81.7
Pp3c23_20900 Physcomitrium patens HOM05D007373 ORTHO05D009192 6.4e-27 124.0 99 57.6
Mapoly0091s0024 Marchantia polymorpha HOM05D007373 ORTHO05D009192 1.0e-24 116.7 99 54.5
BcaB04g21242 Brassica carinata HOM05D007373 ORTHO05D009192 6.2e-22 107.5 58 81.0
AagrBONN_evm.TU.Sc2ySwM_368.2821 Anthoceros agrestis HOM05D007373 ORTHO05D009192 2.4e-21 105.5 100 53.0
SEGI_18158 Sequoiadendron giganteum HOM05D007373 ORTHO05D009192 1.2e-17 93.2 98 40.8
Ah.15g092500 Amaranthus hybridus HOM05D007373 ORTHO05D009192 1.2e-12 76.6 41 80.5
Nn2g15280 Nelumbo nucifera HOM05D007373 ORTHO05D009192 2.0e-12 75.9 38 78.9
Atru.BG.127.p Acer truncatum HOM05D007373 ORTHO05D009192 4.9e-11 71.2 30 96.7
Os03g0578200 Oryza sativa ssp. japonica HOM05D007373 ORTHO05D009192 5.5e-10 67.8 76 40.8
Zm00001eb212440 Zea mays HOM05D007373 ORTHO05D009192 1.6e-09 66.2 76 38.2
Zm00001eb061850 Zea mays HOM05D007373 ORTHO05D009192 2.3e-08 62.4 76 38.2


User provided reference genes

Program Settings