Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0018644 Camellia sinensis var. sinensis HOM05D006738 ORTHO05D008191 1.8e-72 275.8 140 100.0
CSS0019392 Camellia sinensis var. sinensis HOM05D006738 ORTHO05D008191 1.8e-72 275.8 140 100.0
Migut.C01346 Erythranthe guttata HOM05D006738 ORTHO05D008191 1.5e-53 213.0 143 77.6
Sc20g0004710 Simmondsia chinensis HOM05D006738 ORTHO05D008191 2.5e-53 212.2 144 78.5
Nitab4.5_0006564g0050 Nicotiana tabacum HOM05D006738 ORTHO05D008191 3.1e-51 205.3 143 77.6
Solyc06g064810.3 Solanum lycopersicum HOM05D006738 ORTHO05D008191 4.4e-50 201.4 143 76.2
Sopen06g023320 Solanum pennellii HOM05D006738 ORTHO05D008191 4.4e-50 201.4 143 76.2
PGSC0003DMG400005175 Solanum tuberosum HOM05D006738 ORTHO05D008191 5.8e-50 201.1 143 76.2
ECA234G1792 Erigeron canadensis HOM05D006738 ORTHO05D008191 9.9e-50 200.3 138 73.9
Lsat_1_v5_gn_5_78501 Lactuca sativa HOM05D006738 ORTHO05D008191 9.9e-50 200.3 135 74.1
EL10Ac9g22957 Beta vulgaris HOM05D006738 ORTHO05D008191 2.9e-49 198.7 145 73.1
unitig_748.g7730 Utricularia gibba HOM05D000331 ORTHO05D003399 1.4e-48 196.4 141 72.3
AT1G33810 Arabidopsis thaliana HOM05D006738 ORTHO05D008191 1.3e-46 189.9 140 72.9
FvH4_5g25840 Fragaria vesca HOM05D006738 ORTHO05D008191 1.7e-46 189.5 145 71.7
FAN04G1736 Fragaria x ananassa HOM05D006738 ORTHO05D008191 1.7e-46 189.5 145 71.7
FAN18G1689 Fragaria x ananassa HOM05D006738 ORTHO05D008191 1.7e-46 189.5 145 71.7
Aqoxy6G00074 Aquilegia oxysepala HOM05D006738 ORTHO05D008191 2.3e-46 189.1 140 69.3
FAN08G0599 Fragaria x ananassa HOM05D006738 ORTHO05D008191 3.0e-46 188.7 145 71.7
RcHm_v2.0_Chr7g0216321 Rosa chinensis HOM05D006738 ORTHO05D008191 6.6e-46 187.6 146 70.5
VMungo1215G3331 Vigna mungo HOM05D006738 ORTHO05D008191 6.6e-46 187.6 140 70.0
QL09p002987 Quercus lobata HOM05D006738 ORTHO05D008191 8.6e-46 187.2 142 69.7
BraA09t38801Z Brassica rapa HOM05D006738 ORTHO05D008191 1.5e-45 186.4 141 69.5
DCAR_002119 Daucus carota HOM05D006738 ORTHO05D008191 1.5e-45 186.4 143 72.7
AL1G48260 Arabidopsis lyrata HOM05D006738 ORTHO05D008191 2.5e-45 185.7 141 69.5
arahy.Tifrunner.gnm1.ann1.67ZQRX Arachis hypogaea HOM05D006738 ORTHO05D008191 3.3e-45 185.3 144 68.1
C06p12150 Brassica napus HOM05D006738 ORTHO05D008191 3.3e-45 185.3 139 69.1
BolC6t36356H Brassica oleracea HOM05D006738 ORTHO05D008191 3.3e-45 185.3 139 69.1
A09p32610 Brassica napus HOM05D006738 ORTHO05D008191 4.3e-45 184.9 141 68.8
CsaV3_5G040220 Cucumis sativus L. HOM05D006738 ORTHO05D008191 4.3e-45 184.9 141 70.9
Lj3g0020973 Lotus japonicus HOM05D006738 ORTHO05D008191 4.3e-45 184.9 140 66.4
BcaC08g43833 Brassica carinata HOM05D006738 ORTHO05D008191 9.6e-45 183.7 139 69.1
arahy.Tifrunner.gnm1.ann1.WI646Q Arachis hypogaea HOM05D006738 ORTHO05D008191 1.2e-44 183.3 143 67.1
arahy.Tifrunner.gnm1.ann1.H480WY Arachis hypogaea HOM05D006738 ORTHO05D008191 1.8e-43 179.5 140 67.1
Potri.019G076400 Populus trichocarpa HOM05D006738 ORTHO05D008191 1.8e-43 179.5 143 69.2
Cpa.g.sc21.54 Carica papaya HOM05D006738 ORTHO05D008191 5.2e-43 177.9 139 68.3
Dinv41794 Davidia involucrata HOM05D006738 ORTHO05D008191 5.2e-43 177.9 149 67.1
Haze_13918 Corylus avellana HOM05D006738 ORTHO05D008191 8.9e-43 177.2 149 65.8
Sabra19G0086800 Salix brachista HOM05D006738 ORTHO05D008191 1.2e-42 176.8 143 67.8
CDE05G2754 Ceratophyllum demersum HOM05D006738 ORTHO05D008191 1.5e-42 176.4 137 67.9
Prupe.1G547300 Prunus persica HOM05D006738 ORTHO05D008191 5.8e-42 174.5 143 67.1
HPP92_002035 Vanilla planifolia HOM05D006738 ORTHO05D008191 5.8e-42 174.5 137 69.3
Rhsim07G0068100 Rhododendron simsii HOM05D006738 ORTHO05D008191 7.6e-42 174.1 158 60.1
AUR62017706 Chenopodium quinoa HOM05D006738 ORTHO05D008191 9.9e-42 173.7 140 67.9
Sed0003815 Sechium edule HOM05D006738 ORTHO05D008191 1.3e-41 173.3 141 64.5
AUR62032974 Chenopodium quinoa HOM05D006738 ORTHO05D008191 1.7e-41 172.9 147 66.0
PGR042G2463 Punica granatum HOM05D006738 ORTHO05D008191 2.2e-41 172.6 137 67.2
Thecc.08G171800 Theobroma cacao HOM05D006738 ORTHO05D008191 2.2e-41 172.6 144 66.7
Oeu048220.2 Olea europaea HOM05D006738 ORTHO05D008191 2.9e-41 172.2 142 66.9
Ciclev10022763m.g Citrus clementina HOM05D006738 ORTHO05D008191 3.8e-41 171.8 144 63.9
Duzib211G0443 Durio zibethinus HOM05D006738 ORTHO05D008191 3.8e-41 171.8 144 65.3
Gohir.A05G252100 Gossypium hirsutum HOM05D006738 ORTHO05D008191 3.8e-41 171.8 141 66.7
Peaxi162Scf00269g01621 Petunia axillaris HOM05D006738 ORTHO05D008191 3.8e-41 171.8 140 67.9
MELO3C022198.2 Cucumis melo HOM05D006738 ORTHO05D008191 4.9e-41 171.4 141 66.7
Lj2A790G37 Lonicera japonica HOM05D006738 ORTHO05D008191 4.9e-41 171.4 115 77.4
COL.COLO4_24620 Corchorus olitorius HOM05D006738 ORTHO05D008191 8.4e-41 170.6 142 66.2
Gohir.D05G253900 Gossypium hirsutum HOM05D006738 ORTHO05D008191 8.4e-41 170.6 141 66.0
MD15G1400100 Malus domestica HOM05D006738 ORTHO05D008191 1.1e-40 170.2 143 65.7
Os08g0112600 Oryza sativa ssp. japonica HOM05D006738 ORTHO05D008191 1.1e-40 170.2 140 64.3
Atru.chr12.822 Acer truncatum HOM05D006738 ORTHO05D008191 1.4e-40 169.9 144 65.3
Ah.01g012440 Amaranthus hybridus HOM05D006738 ORTHO05D008191 7.1e-40 167.5 142 67.6
MD08G1215600 Malus domestica HOM05D006738 ORTHO05D008191 1.2e-39 166.8 143 65.0
THA.LOC104815902 Tarenaya hassleriana HOM05D006738 ORTHO05D008191 1.6e-39 166.4 139 65.5
TWI14G1101 Tripterygium wilfordii HOM05D006738 ORTHO05D008191 1.6e-39 166.4 141 63.8
Manes.02G195900 Manihot esculenta HOM05D006738 ORTHO05D008191 2.1e-39 166.0 146 64.4
SGA_v2.0_scaffold24G10619 Striga asiatica HOM05D006738 ORTHO05D008191 3.5e-39 165.2 142 64.1
Cc10_g09240 Coffea canephora HOM05D006738 ORTHO05D008191 4.6e-39 164.9 141 62.4
CiPaw.04G011300 Carya illinoinensis HOM05D006738 ORTHO05D008191 1.0e-38 163.7 145 62.1
Eucgr.F02960 Eucalyptus grandis HOM05D006738 ORTHO05D008191 1.7e-38 162.9 141 63.1
CANSAT11G1518 Cannabis sativa HOM05D006738 ORTHO05D008191 3.0e-38 162.2 143 62.9
Nn5g27492 Nelumbo nucifera HOM05D006738 ORTHO05D008191 3.0e-38 162.2 139 64.0
GSVIVG01025906001 Vitis vinifera HOM05D006738 ORTHO05D008191 3.0e-38 162.2 147 61.9
Phvul.002G133500 Phaseolus vulgaris HOM05D006738 ORTHO05D008191 6.6e-38 161.0 140 62.1
QL09p004200 Quercus lobata HOM05D006738 ORTHO05D008191 2.5e-37 159.1 142 61.3
CiPaw.03G017200 Carya illinoinensis HOM05D006738 ORTHO05D008191 4.3e-37 158.3 145 60.0
TPR.G34128 Trifolium pratense HOM05D006738 ORTHO05D008191 5.6e-37 157.9 140 62.1
Aa31LG6G8130 Aethionema arabicum HOM05D000065 ORTHO05D000162 1.3e-36 156.8 135 61.5
CARHR033210 Cardamine hirsuta HOM05D006738 ORTHO05D008191 1.3e-36 156.8 139 61.2
Psat0s2394g0120 Pisum sativum HOM05D006738 ORTHO05D008191 1.3e-36 156.8 140 58.6
Glyma.01G010600 Glycine max HOM05D006738 ORTHO05D008191 1.6e-36 156.4 143 62.9
PSO782G5196 Papaver somniferum HOM05D006738 ORTHO05D008191 1.6e-36 156.4 141 63.1
PSO170G3684 Papaver somniferum HOM05D006738 ORTHO05D008191 2.8e-36 155.6 141 61.0
BcaB07g33015 Brassica carinata HOM05D006738 ORTHO05D008191 3.6e-36 155.2 139 61.2
Thhalv10009075m.g Eutrema salsugineum HOM05D006738 ORTHO05D008191 3.6e-36 155.2 139 61.2
Lalb_Chr01g0000011 Lupinus albus HOM05D006738 ORTHO05D008191 4.8e-36 154.8 136 59.6
QL09p004074 Quercus lobata HOM05D006738 ORTHO05D008191 8.1e-36 154.1 142 59.9
Sp1g29140 Schrenkiella parvula HOM05D006738 ORTHO05D008191 1.4e-35 153.3 138 60.1
ATR1089G071 Amborella trichopoda HOM05D006738 ORTHO05D008191 1.5e-34 149.8 138 60.9
Medtr4g031650 Medicago truncatula HOM05D006738 ORTHO05D008191 2.0e-34 149.4 141 59.6
Carub.0001s3198 Capsella rubella HOM05D006738 ORTHO05D008191 9.9e-34 147.1 141 56.7
Cfa008114 Carpinus fangiana HOM05D006738 ORTHO05D008191 4.2e-32 141.7 140 57.9
QL09p000479 Quercus lobata HOM05D006738 ORTHO05D008191 1.2e-31 140.2 118 65.3
vmacro13762 Vaccinium macrocarpon HOM05D006738 ORTHO05D008191 7.9e-31 137.5 130 60.8
QL09p000342 Quercus lobata HOM05D006738 ORTHO05D008191 5.6e-29 131.3 139 56.8
Actinidia29399 Actinidia chinensis HOM05D006738 ORTHO05D008191 9.6e-29 130.6 112 63.4
QL09p000618 Quercus lobata HOM05D006738 ORTHO05D008191 2.1e-28 129.4 111 64.0
MBI03_g14516_MAGBIO Magnolia biondii HOM05D006738 ORTHO05D008191 2.8e-28 129.0 98 71.4
Gorai.009G265500 Gossypium raimondii HOM05D006738 ORTHO05D008191 6.2e-28 127.9 116 61.2
Cc10_g16410 Coffea canephora HOM05D006738 ORTHO05D008191 2.2e-25 119.4 77 74.0
CiPaw.09G026000 Carya illinoinensis HOM05D006738 ORTHO05D008191 6.4e-25 117.9 140 48.6
SMO118G0306 Selaginella moellendorffii HOM05D006738 ORTHO05D008191 8.4e-25 117.5 134 46.3
Zm00001eb236960 Zea mays HOM05D002538 ORTHO05D008191 8.4e-25 117.5 111 56.8
AagrBONN_evm.TU.Sc2ySwM_228.5134 Anthoceros agrestis HOM05D006738 ORTHO05D008191 5.5e-24 114.8 125 44.8
ClCG08G000640 Citrullus lanatus HOM05D006738 ORTHO05D008191 1.2e-23 113.6 346 30.9
Pp3c3_5650 Physcomitrium patens HOM05D006738 ORTHO05D008191 2.7e-23 112.5 131 45.0
QL09p003020 Quercus lobata HOM05D006738 ORTHO05D008191 1.3e-22 110.2 70 77.1
Zm00001eb260580 Zea mays HOM05D006738 ORTHO05D008191 2.3e-22 109.4 116 52.6
Mapoly0047s0047 Marchantia polymorpha HOM05D006738 ORTHO05D008191 8.7e-22 107.5 117 47.0
SEGI_33861 Sequoiadendron giganteum HOM05D006738 ORTHO05D008191 2.8e-20 102.4 115 51.3
CiPaw.16G110800 Carya illinoinensis HOM05D006738 ORTHO05D008191 4.9e-17 91.7 66 69.7
HanXRQChr10g0309751 Helianthus annuus HOM05D006738 ORTHO05D008191 1.9e-16 89.7 80 63.8
FAN13G2380 Fragaria x ananassa HOM05D006738 ORTHO05D008191 3.2e-16 89.0 143 44.1
Hma1.2p1_0935F.1_g238700 Hydrangea macrophylla HOM05D006738 ORTHO05D008191 9.3e-16 87.4 42 97.6
Oeu017736.2 Olea europaea HOM05D006738 ORTHO05D008191 7.4e-13 77.8 90 50.0
SHI08988 Sapria himalayana HOM05D006738 ORTHO05D008191 1.1e-11 73.9 80 52.5
Hma1.2p1_0935F.1_g238670 Hydrangea macrophylla HOM05D006738 ORTHO05D008191 1.2e-10 70.5 50 72.0
Medtr4g031845 Medicago truncatula HOM05D006738 ORTHO05D008191 4.5e-10 68.6 69 56.5
Zm00001eb223600 Zea mays HOM05D002538 ORTHO05D008191 1.9e-08 63.2 77 53.2
Zm00001eb351370 Zea mays HOM05D002538 ORTHO05D003162 9.3e-08 60.8 76 50.0
Glyma.09G210500 Glycine max HOM05D006738 ORTHO05D008191 1.6e-07 60.1 76 47.4
Zm00001eb166970 Zea mays HOM05D002538 ORTHO05D003162 2.1e-07 59.7 76 48.7
PRCOL_00001928 Prasinoderma coloniale HOM05D006738 ORTHO05D008191 4.6e-07 58.5 112 28.6
Zm00001eb359390 Zea mays HOM05D006738 ORTHO05D008191 1.0e-06 57.4 79 46.8


User provided reference genes

Program Settings