Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0019373 Camellia sinensis var. sinensis HOM05D006760 ORTHO05D008121 8.2e-38 159.8 78 100.0
CSS0016777 Camellia sinensis var. sinensis HOM05D006760 ORTHO05D008121 3.5e-36 154.5 78 96.2
vmacro00052 Vaccinium macrocarpon HOM05D006760 ORTHO05D008121 4.8e-30 134.0 78 82.1
CSS0002453 Camellia sinensis var. sinensis HOM05D006760 ORTHO05D008121 2.4e-29 131.7 77 84.4
CSS0041869 Camellia sinensis var. sinensis HOM05D006760 ORTHO05D008121 2.4e-29 131.7 77 84.4
Lj8C333T3 Lonicera japonica HOM05D006760 ORTHO05D008121 4.1e-29 131.0 78 79.5
Actinidia32779 Actinidia chinensis HOM05D006760 ORTHO05D008121 9.1e-29 129.8 77 81.8
Actinidia01259 Actinidia chinensis HOM05D006760 ORTHO05D008121 1.2e-28 129.4 78 79.5
Rhsim11G0034300 Rhododendron simsii HOM05D006760 ORTHO05D008121 2.7e-28 128.3 78 76.9
Hma1.2p1_1873F.1_g306180 Hydrangea macrophylla HOM05D006760 ORTHO05D008121 4.5e-28 127.5 78 79.5
Ca_25094_v3 Cicer arietinum L. HOM05D006760 ORTHO05D008121 1.7e-27 125.6 78 78.2
Ca_30394_v3 Cicer arietinum L. HOM05D006760 ORTHO05D008121 1.7e-27 125.6 78 78.2
Cc00_g07450 Coffea canephora HOM05D006760 ORTHO05D008121 1.7e-27 125.6 78 80.8
TPR.G17264 Trifolium pratense HOM05D006760 ORTHO05D008121 1.7e-27 125.6 78 78.2
FvH4_5g24100 Fragaria vesca HOM05D006760 ORTHO05D008121 2.2e-27 125.2 78 75.6
FAN18G2939 Fragaria x ananassa HOM05D006760 ORTHO05D008121 2.2e-27 125.2 78 75.6
Cfa012614 Carpinus fangiana HOM05D006760 ORTHO05D008121 3.8e-27 124.4 78 79.5
Dinv37413 Davidia involucrata HOM05D006760 ORTHO05D008121 3.8e-27 124.4 78 79.5
Medtr5g026680 Medicago truncatula HOM05D006760 ORTHO05D008121 6.5e-27 123.6 78 76.9
FAN18G0636 Fragaria x ananassa HOM05D006760 ORTHO05D008121 1.5e-26 122.5 78 74.4
Prupe.5G019400 Prunus persica HOM05D006760 ORTHO05D008121 1.5e-26 122.5 78 76.9
FAN04G2385 Fragaria x ananassa HOM05D006760 ORTHO05D008121 1.9e-26 122.1 78 74.4
PGSC0003DMG400030849 Solanum tuberosum HOM05D006760 ORTHO05D008121 1.9e-26 122.1 78 74.4
RcHm_v2.0_Chr7g0213631 Rosa chinensis HOM05D006760 ORTHO05D008121 4.2e-26 120.9 78 74.4
FAN13G0245 Fragaria x ananassa HOM05D006760 ORTHO05D008121 5.5e-26 120.6 78 73.1
Solyc08g075680.4 Solanum lycopersicum HOM05D006760 ORTHO05D008121 5.5e-26 120.6 78 73.1
CiPaw.12G072300 Carya illinoinensis HOM05D006760 ORTHO05D008121 7.2e-26 120.2 78 76.9
Lj2g0001135 Lotus japonicus HOM05D006760 ORTHO05D008121 1.2e-25 119.4 78 75.6
Nitab4.5_0000030g0230 Nicotiana tabacum HOM05D006760 ORTHO05D008121 1.2e-25 119.4 78 71.8
Nitab4.5_0001023g0160 Nicotiana tabacum HOM05D006760 ORTHO05D008121 1.2e-25 119.4 78 71.8
Phvul.002G127600 Phaseolus vulgaris HOM05D006760 ORTHO05D008121 2.1e-25 118.6 78 73.1
Sopen08g024330 Solanum pennellii HOM05D006760 ORTHO05D008121 2.1e-25 118.6 78 71.8
arahy.Tifrunner.gnm1.ann1.WT3CQ0 Arachis hypogaea HOM05D006760 ORTHO05D008121 2.7e-25 118.2 78 75.6
arahy.Tifrunner.gnm1.ann1.Z5DNFJ Arachis hypogaea HOM05D006760 ORTHO05D008121 2.7e-25 118.2 78 75.6
CiPaw.11G103800 Carya illinoinensis HOM05D006760 ORTHO05D008121 2.7e-25 118.2 78 74.4
Oeu046799.1 Olea europaea HOM05D006760 ORTHO05D008121 2.7e-25 118.2 78 74.4
Manes.15G182500 Manihot esculenta HOM05D006760 ORTHO05D008121 4.7e-25 117.5 78 70.5
Ciclev10001352m.g Citrus clementina HOM05D006760 ORTHO05D008121 1.0e-24 116.3 78 74.4
Glyma.09G214700 Glycine max HOM05D006760 ORTHO05D008121 1.0e-24 116.3 78 76.9
TAR629G0494 Trochodendron aralioides HOM05D006760 ORTHO05D008121 1.4e-24 115.9 77 72.7
MD06G1017100 Malus domestica HOM05D006760 ORTHO05D008121 2.3e-24 115.2 78 73.1
Peaxi162Scf00193g00023 Petunia axillaris HOM05D006760 ORTHO05D008121 2.3e-24 115.2 78 70.5
Eucgr.D02586 Eucalyptus grandis HOM05D006760 ORTHO05D008121 3.0e-24 114.8 77 71.4
CANSAT21G1082 Cannabis sativa HOM05D006760 ORTHO05D008121 4.0e-24 114.4 78 70.5
PGR031G0562 Punica granatum HOM05D006760 ORTHO05D008121 4.0e-24 114.4 78 71.8
PGR067G0006 Punica granatum HOM05D006760 ORTHO05D008121 4.0e-24 114.4 78 71.8
Glyma.04G123100 Glycine max HOM05D006760 ORTHO05D008121 5.2e-24 114.0 80 76.2
GSVIVG01022805001 Vitis vinifera HOM05D006760 ORTHO05D008121 5.2e-24 114.0 78 75.6
Aqoxy3G00108 Aquilegia oxysepala HOM05D006760 ORTHO05D008121 6.8e-24 113.6 77 67.5
Lalb_Chr16g0380681 Lupinus albus HOM05D006760 ORTHO05D008121 6.8e-24 113.6 78 71.8
MSTRG.13908 Avicennia marina HOM05D006760 ORTHO05D008121 8.8e-24 113.2 78 69.2
MSTRG.1766 Avicennia marina HOM05D006760 ORTHO05D008121 8.8e-24 113.2 77 71.4
CAN.G800.11 Capsicum annuum HOM05D006760 ORTHO05D008121 8.8e-24 113.2 78 69.2
Lalb_Chr05g0229401 Lupinus albus HOM05D006760 ORTHO05D008121 1.5e-23 112.5 80 71.2
SGA_v2.0_scaffold111G31361 Striga asiatica HOM05D006760 ORTHO05D008121 2.6e-23 111.7 78 71.8
Migut.E01355 Erythranthe guttata HOM05D006760 ORTHO05D008121 4.4e-23 110.9 76 71.1
DCAR_006312 Daucus carota HOM05D006760 ORTHO05D008121 7.5e-23 110.2 78 69.2
SalBow8G1564 Salvia bowleyana HOM05D006760 ORTHO05D008121 7.5e-23 110.2 77 71.4
Aa31LG9G15690 Aethionema arabicum HOM05D006760 ORTHO05D008121 9.8e-23 109.8 78 70.5
Atru.chr6.2107 Acer truncatum HOM05D006760 ORTHO05D008121 3.7e-22 107.8 78 70.5
BcaB01g01049 Brassica carinata HOM05D006760 ORTHO05D008121 4.9e-22 107.5 78 67.9
Os03g0853600 Oryza sativa ssp. japonica HOM05D006760 ORTHO05D008121 4.9e-22 107.5 74 66.2
Potri.001G130100 Populus trichocarpa HOM05D006760 ORTHO05D008121 4.9e-22 107.5 78 67.9
Thecc.03G324900 Theobroma cacao HOM05D006760 ORTHO05D008121 1.4e-21 105.9 78 67.9
BcaC01g01943 Brassica carinata HOM05D006760 ORTHO05D008121 1.8e-21 105.5 78 67.9
A06p21180 Brassica napus HOM05D006760 ORTHO05D008121 1.8e-21 105.5 78 67.9
C03p70350 Brassica napus HOM05D006760 ORTHO05D008121 1.8e-21 105.5 78 67.9
BolC3t19291H Brassica oleracea HOM05D006760 ORTHO05D008121 1.8e-21 105.5 78 67.9
BraA06t25205Z Brassica rapa HOM05D006760 ORTHO05D008121 1.8e-21 105.5 78 67.9
AL5G24580 Arabidopsis lyrata HOM05D006760 ORTHO05D008121 2.4e-21 105.1 78 66.7
AT3G45900 Arabidopsis thaliana HOM05D006760 ORTHO05D008121 2.4e-21 105.1 78 66.7
Carub.0005s1175 Capsella rubella HOM05D006760 ORTHO05D008121 2.4e-21 105.1 78 66.7
THA.LOC104798519 Tarenaya hassleriana HOM05D006760 ORTHO05D008121 2.4e-21 105.1 78 70.5
Sp5g15640 Schrenkiella parvula HOM05D006760 ORTHO05D008121 3.1e-21 104.8 78 65.4
Zm00001eb064790 Zea mays HOM05D006760 ORTHO05D008121 3.1e-21 104.8 73 65.8
Thhalv10002556m.g Eutrema salsugineum HOM05D006760 ORTHO05D008121 4.1e-21 104.4 78 65.4
Sabra01G0100600 Salix brachista HOM05D006760 ORTHO05D008121 5.4e-21 104.0 78 66.7
Duzib205G0742 Durio zibethinus HOM05D006760 ORTHO05D008121 9.1e-21 103.2 78 65.4
CARHR154260 Cardamine hirsuta HOM05D006760 ORTHO05D008121 1.2e-20 102.8 78 65.4
ECA246G2456 Erigeron canadensis HOM05D006760 ORTHO05D008121 1.2e-20 102.8 80 66.2
HanXRQChr06g0173431 Helianthus annuus HOM05D006760 ORTHO05D008121 1.2e-20 102.8 79 68.4
Ah.12g056060 Amaranthus hybridus HOM05D006760 ORTHO05D008121 2.0e-20 102.1 76 64.5
AUR62027315 Chenopodium quinoa HOM05D006760 ORTHO05D008121 2.0e-20 102.1 76 65.8
COL.COLO4_37233 Corchorus olitorius HOM05D006760 ORTHO05D008121 2.0e-20 102.1 73 67.1
Lsat_1_v5_gn_3_23361 Lactuca sativa HOM05D006760 ORTHO05D008121 2.0e-20 102.1 79 67.1
HPP92_015129 Vanilla planifolia HOM05D006760 ORTHO05D008121 3.5e-20 101.3 73 65.8
Hund11097 Selenicereus undatus HOM05D006760 ORTHO05D008121 4.5e-20 100.9 76 64.5
AUR62007417 Chenopodium quinoa HOM05D006760 ORTHO05D008121 7.7e-20 100.1 76 64.5
Haze_08041 Corylus avellana HOM05D006760 ORTHO05D008121 1.0e-19 99.8 65 75.4
Haze_08051 Corylus avellana HOM05D006760 ORTHO05D008121 1.0e-19 99.8 65 75.4
EL10Ac5g11912 Beta vulgaris HOM05D006760 ORTHO05D008121 2.9e-19 98.2 74 63.5
VMungo1215G0713 Vigna mungo HOM05D006760 ORTHO05D008121 6.6e-19 97.1 64 71.9
CDE11G0454 Ceratophyllum demersum HOM05D006760 ORTHO05D008121 8.6e-19 96.7 77 62.3
Gohir.D12G202700 Gossypium hirsutum HOM05D006760 ORTHO05D008121 8.6e-19 96.7 79 63.3
PSO063G6156 Papaver somniferum HOM05D006760 ORTHO05D008121 8.6e-19 96.7 73 54.8
PSO782G3372 Papaver somniferum HOM05D006760 ORTHO05D008121 8.6e-19 96.7 73 54.8
Gorai.008G217700 Gossypium raimondii HOM05D006760 ORTHO05D008121 1.1e-18 96.3 79 63.3
HanXRQChr17g0537101 Helianthus annuus HOM05D006760 ORTHO05D008121 1.1e-18 96.3 79 64.6
TWI12G1140 Tripterygium wilfordii HOM05D006760 ORTHO05D008121 2.5e-18 95.1 78 62.8
CDE02G3667 Ceratophyllum demersum HOM05D006760 ORTHO05D008121 4.2e-18 94.4 76 60.5
Gohir.A12G200000 Gossypium hirsutum HOM05D006760 ORTHO05D008121 4.2e-18 94.4 79 60.8
Sc22g0002140 Simmondsia chinensis HOM05D006760 ORTHO05D008121 7.2e-18 93.6 77 62.3
Psat2g143640 Pisum sativum HOM05D006760 ORTHO05D008121 1.2e-17 92.8 60 73.3
unitig_52.g17262 Utricularia gibba HOM05D006760 ORTHO05D008121 3.0e-16 88.2 79 60.8
C01p33630 Brassica napus HOM05D006760 ORTHO05D008121 8.9e-16 86.7 72 61.1
MSTRG.11878 Avicennia marina HOM05D006760 ORTHO05D008121 3.7e-14 81.3 61 65.6
ATR0829G077 Amborella trichopoda HOM05D006760 ORTHO05D008121 2.5e-10 68.6 73 50.7
unitig_699.g19677 Utricularia gibba HOM05D006760 ORTHO05D008121 4.3e-10 67.8 76 51.3
Actinidia06143 Actinidia chinensis HOM05D005525 ORTHO05D006341 4.0e-08 61.2 64 43.8
CSS0028512 Camellia sinensis var. sinensis HOM05D005525 ORTHO05D006341 2.9e-06 55.1 64 40.6
Rhsim09G0206200 Rhododendron simsii HOM05D005525 ORTHO05D006341 4.9e-06 54.3 64 45.3
arahy.Tifrunner.gnm1.ann1.SHH15X Arachis hypogaea HOM05D005525 ORTHO05D006341 6.4e-06 53.9 63 42.9
vmacro10127 Vaccinium macrocarpon HOM05D005525 ORTHO05D006341 6.4e-06 53.9 64 42.2


User provided reference genes

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