Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0019362 Camellia sinensis var. sinensis HOM05D001181 ORTHO05D007712 1.0e-54 216.5 107 100.0
Rhsim02G0204900 Rhododendron simsii HOM05D001181 ORTHO05D007712 4.9e-33 144.4 94 74.5
Actinidia22321 Actinidia chinensis HOM05D001181 ORTHO05D007712 3.5e-31 138.3 97 73.2
Ciclev10020311m.g Citrus clementina HOM05D001181 ORTHO05D007712 7.8e-31 137.1 97 71.1
Dinv41779 Davidia involucrata HOM05D001181 ORTHO05D007712 7.8e-31 137.1 93 73.1
Duzib150G0834 Durio zibethinus HOM05D001181 ORTHO05D007712 7.8e-31 137.1 97 71.1
CSS0039143 Camellia sinensis var. sinensis HOM05D001181 ORTHO05D007712 1.0e-30 136.7 97 71.1
Atru.chr13.2345 Acer truncatum HOM05D001181 ORTHO05D007712 1.3e-30 136.3 94 71.3
Manes.02G199700 Manihot esculenta HOM05D001181 ORTHO05D007712 1.3e-30 136.3 94 72.3
vmacro11201 Vaccinium macrocarpon HOM05D001181 ORTHO05D007712 1.3e-30 136.3 97 71.1
TAR628G1015 Trochodendron aralioides HOM05D001181 ORTHO05D007712 1.7e-30 136.0 97 69.1
TAR376G0611 Trochodendron aralioides HOM05D001181 ORTHO05D007712 3.9e-30 134.8 97 69.1
Thecc.09G289200 Theobroma cacao HOM05D001181 ORTHO05D007712 6.6e-30 134.0 97 68.0
MD08G1217300 Malus domestica HOM05D001181 ORTHO05D007712 8.7e-30 133.7 97 69.1
Cfa012995 Carpinus fangiana HOM05D001181 ORTHO05D007712 1.1e-29 133.3 97 69.1
QL02p023588 Quercus lobata HOM05D001181 ORTHO05D007712 1.5e-29 132.9 96 69.8
RcHm_v2.0_Chr7g0226521 Rosa chinensis HOM05D001181 ORTHO05D007712 1.5e-29 132.9 97 67.0
RcHm_v2.0_Chr7g0226551 Rosa chinensis HOM05D001181 ORTHO05D007712 1.5e-29 132.9 97 66.0
Sed0016515 Sechium edule HOM05D001181 ORTHO05D007712 1.5e-29 132.9 97 69.1
Thecc.09G289100 Theobroma cacao HOM05D001181 ORTHO05D007712 1.5e-29 132.9 97 68.0
FvH4_5g31330 Fragaria vesca HOM05D001181 ORTHO05D007712 1.9e-29 132.5 97 68.0
FAN18G0918 Fragaria x ananassa HOM05D001181 ORTHO05D007712 1.9e-29 132.5 97 68.0
Duzib170G0484 Durio zibethinus HOM05D001181 ORTHO05D007712 2.5e-29 132.1 97 67.0
Potri.013G104200 Populus trichocarpa HOM05D001181 ORTHO05D007712 4.3e-29 131.3 97 67.0
CiPaw.07G234300 Carya illinoinensis HOM05D001181 ORTHO05D007712 5.6e-29 131.0 97 71.1
CDE07G1631 Ceratophyllum demersum HOM05D001181 ORTHO05D007712 5.6e-29 131.0 103 66.0
FAN13G0428 Fragaria x ananassa HOM05D001181 ORTHO05D007712 5.6e-29 131.0 97 68.0
TWI59G0211 Tripterygium wilfordii HOM05D001181 ORTHO05D007712 7.3e-29 130.6 97 69.1
Gohir.A05G082900 Gossypium hirsutum HOM05D001181 ORTHO05D007712 9.6e-29 130.2 97 67.0
Gorai.009G087500 Gossypium raimondii HOM05D001181 ORTHO05D007712 9.6e-29 130.2 97 67.0
HanXRQChr12g0382121 Helianthus annuus HOM05D001181 ORTHO05D007712 9.6e-29 130.2 97 67.0
Gohir.D05G085800 Gossypium hirsutum HOM05D001181 ORTHO05D007712 1.3e-28 129.8 97 66.0
PSO017G2270 Papaver somniferum HOM05D001181 ORTHO05D007712 1.3e-28 129.8 97 66.0
Sabra13G0090100 Salix brachista HOM05D001181 ORTHO05D007712 1.3e-28 129.8 97 66.0
MELO3C024090.2 Cucumis melo HOM05D001181 ORTHO05D007712 2.1e-28 129.0 97 64.9
ECA233G5758 Erigeron canadensis HOM05D001181 ORTHO05D007712 2.1e-28 129.0 93 68.8
Nn5g27453 Nelumbo nucifera HOM05D001181 ORTHO05D007712 2.1e-28 129.0 97 67.0
COL.COLO4_19948 Corchorus olitorius HOM05D001181 ORTHO05D007712 2.8e-28 128.6 95 67.4
PSO170G0801 Papaver somniferum HOM05D001181 ORTHO05D007712 2.8e-28 128.6 97 66.0
GSVIVG01025950001 Vitis vinifera HOM05D001181 ORTHO05D007712 2.8e-28 128.6 97 62.9
Cc10_g11160 Coffea canephora HOM05D001181 ORTHO05D007712 3.6e-28 128.3 97 67.0
HanXRQChr09g0262621 Helianthus annuus HOM05D001181 ORTHO05D007712 4.8e-28 127.9 97 66.0
PGR083G1668 Punica granatum HOM05D001181 ORTHO05D007712 4.8e-28 127.9 97 67.0
ClCG09G010140 Citrullus lanatus HOM05D001181 ORTHO05D007712 8.1e-28 127.1 97 63.9
Eucgr.F04070 Eucalyptus grandis HOM05D001181 ORTHO05D007712 8.1e-28 127.1 97 66.0
MSTRG.22461 Avicennia marina HOM05D001181 ORTHO05D007712 1.1e-27 126.7 97 64.9
PGSC0003DMG400027624 Solanum tuberosum HOM05D001181 ORTHO05D007712 1.1e-27 126.7 98 64.3
DCAR_016676 Daucus carota HOM05D001181 ORTHO05D007712 1.8e-27 125.9 97 63.9
Sopen11g010190 Solanum pennellii HOM05D001181 ORTHO05D007712 1.8e-27 125.9 98 64.3
Medtr3g005970 Medicago truncatula HOM05D001181 ORTHO05D007712 2.4e-27 125.6 97 64.9
Hund16765 Selenicereus undatus HOM05D001181 ORTHO05D007712 2.4e-27 125.6 97 63.9
Migut.N03357 Erythranthe guttata HOM05D001181 ORTHO05D007712 3.1e-27 125.2 97 63.9
ATR1136G036 Amborella trichopoda HOM05D001181 ORTHO05D007712 4.0e-27 124.8 97 61.9
Lj3g0016198 Lotus japonicus HOM05D001181 ORTHO05D007712 4.0e-27 124.8 97 64.9
Solyc11g020060.2 Solanum lycopersicum HOM05D001181 ORTHO05D007712 4.0e-27 124.8 98 63.3
Thhalv10018793m.g Eutrema salsugineum HOM05D001181 ORTHO05D007712 6.9e-27 124.0 97 64.9
AT1G72190 Arabidopsis thaliana HOM05D001181 ORTHO05D007712 9.0e-27 123.6 97 63.9
Sc01g0002050 Simmondsia chinensis HOM05D001181 ORTHO05D007712 9.0e-27 123.6 97 63.9
VMungo1080G0499 Vigna mungo HOM05D001181 ORTHO05D007712 9.0e-27 123.6 97 64.9
arahy.Tifrunner.gnm1.ann1.53YFBS Arachis hypogaea HOM05D001181 ORTHO05D007712 1.5e-26 122.9 97 62.9
arahy.Tifrunner.gnm1.ann1.ASS065 Arachis hypogaea HOM05D001181 ORTHO05D007712 2.0e-26 122.5 97 62.9
TPR.G25511 Trifolium pratense HOM05D001181 ORTHO05D007712 2.0e-26 122.5 97 63.9
AL2G31860 Arabidopsis lyrata HOM05D001181 ORTHO05D007712 2.6e-26 122.1 97 62.9
Peaxi162Scf01013g00239 Petunia axillaris HOM05D001181 ORTHO05D007712 3.4e-26 121.7 98 63.3
Ca_14160_v3 Cicer arietinum L. HOM05D001181 ORTHO05D007712 4.5e-26 121.3 97 62.9
Lalb_Chr15g0080101 Lupinus albus HOM05D001181 ORTHO05D007712 4.5e-26 121.3 97 62.9
CAN.G202.8 Capsicum annuum HOM05D001181 ORTHO05D007712 5.8e-26 120.9 98 61.2
CARHR065050 Cardamine hirsuta HOM05D001181 ORTHO05D007712 5.8e-26 120.9 97 62.9
Glyma.04G110700 Glycine max HOM05D001181 ORTHO05D007712 5.8e-26 120.9 97 61.9
Aa31LG4G8370 Aethionema arabicum HOM05D001181 ORTHO05D007712 7.6e-26 120.6 97 63.9
BolC6t38610H Brassica oleracea HOM05D001181 ORTHO05D007712 7.6e-26 120.6 97 63.9
Lsat_1_v5_gn_5_67120 Lactuca sativa HOM05D001181 ORTHO05D007712 7.6e-26 120.6 93 64.5
Phvul.005G002200 Phaseolus vulgaris HOM05D001181 ORTHO05D007712 7.6e-26 120.6 97 60.8
Sp5g27280 Schrenkiella parvula HOM05D001181 ORTHO05D007712 7.6e-26 120.6 97 62.9
Aqoxy6G02411 Aquilegia oxysepala HOM05D001181 ORTHO05D007712 9.9e-26 120.2 97 61.9
BcaC08g45721 Brassica carinata HOM05D001181 ORTHO05D007712 9.9e-26 120.2 97 63.9
C06p35060 Brassica napus HOM05D001181 ORTHO05D007712 9.9e-26 120.2 96 63.5
ATR1136G151 Amborella trichopoda HOM05D001181 ORTHO05D007712 1.3e-25 119.8 97 60.8
A07p30310 Brassica napus HOM05D001181 ORTHO05D007712 1.3e-25 119.8 97 63.9
BraA07t30668Z Brassica rapa HOM05D001181 ORTHO05D007712 1.3e-25 119.8 97 63.9
Ciclev10024174m.g Citrus clementina HOM05D001181 ORTHO05D007712 1.7e-25 119.4 103 63.1
Os07g0264100 Oryza sativa ssp. japonica HOM05D001181 ORTHO05D007712 1.7e-25 119.4 97 59.8
BcaB03g15655 Brassica carinata HOM05D001181 ORTHO05D007712 2.2e-25 119.0 97 62.9
AUR62004582 Chenopodium quinoa HOM05D001181 ORTHO05D007712 2.9e-25 118.6 98 62.2
AUR62023528 Chenopodium quinoa HOM05D001181 ORTHO05D007712 4.9e-25 117.9 98 62.2
SGA_v2.0_scaffold56G20007 Striga asiatica HOM05D001181 ORTHO05D007712 4.9e-25 117.9 100 59.0
SGA_v2.0_scaffold25G11066 Striga asiatica HOM05D004969 ORTHO05D007712 6.4e-25 117.5 100 64.0
Carub.0002s1900 Capsella rubella HOM05D001181 ORTHO05D007712 1.1e-24 116.7 97 60.8
CANSAT25G0440 Cannabis sativa HOM05D001181 ORTHO05D007712 1.4e-24 116.3 97 60.8
Ah.05g178750 Amaranthus hybridus HOM05D001181 ORTHO05D007712 4.2e-24 114.8 97 59.8
PGSC0003DMG400035491 Solanum tuberosum HOM05D001181 ORTHO05D007712 5.4e-24 114.4 98 62.2
EL10Ac1g00154 Beta vulgaris HOM05D001181 ORTHO05D007712 9.3e-24 113.6 94 57.4
Zm00001eb097200 Zea mays HOM05D001181 ORTHO05D007712 9.3e-24 113.6 97 57.7
THA.LOC104810629 Tarenaya hassleriana HOM05D001181 ORTHO05D007712 1.2e-23 113.2 97 59.8
unitig_21.g20247 Utricularia gibba HOM05D001181 ORTHO05D007712 2.7e-23 112.1 98 58.2
SEGI_12091 Sequoiadendron giganteum HOM05D001181 ORTHO05D007712 4.3e-21 104.8 97 57.7
Sopen06g023790 Solanum pennellii HOM05D001181 ORTHO05D007712 1.3e-20 103.2 98 56.1
Mapoly0015s0127 Marchantia polymorpha HOM05D001181 ORTHO05D007712 1.8e-19 99.4 97 49.5
Lj7A623G47 Lonicera japonica HOM05D001181 ORTHO05D007712 4.0e-19 98.2 74 67.6
Pp3c16_19100 Physcomitrium patens HOM05D001181 ORTHO05D007712 1.2e-18 96.7 102 48.0
CSS0047492 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 2.0e-18 95.9 75 68.0
AagrBONN_evm.TU.Sc2ySwM_362.1380 Anthoceros agrestis HOM05D001181 ORTHO05D007712 1.3e-17 93.2 95 50.5
Cpa.g.sc177.21 Carica papaya HOM05D001181 ORTHO05D007712 2.9e-17 92.0 84 57.1
CsaV3_7G024600 Cucumis sativus L. HOM05D001181 ORTHO05D007712 1.4e-16 89.7 74 60.8
CSS0031569 Camellia sinensis var. sinensis HOM05D001181 ORTHO05D007712 1.9e-16 89.4 65 69.2
Nitab4.5_0001579g0040 Nicotiana tabacum HOM05D001181 ORTHO05D007712 3.2e-16 88.6 98 51.0
Os07g0263400 Oryza sativa ssp. japonica HOM05D001181 ORTHO05D007712 3.2e-16 88.6 78 56.4
SMO361G0036 Selaginella moellendorffii HOM05D001181 ORTHO05D007712 1.3e-14 83.2 86 46.5
SMO361G0603 Selaginella moellendorffii HOM05D001181 ORTHO05D007712 1.3e-14 83.2 86 46.5
CSS0017991 Camellia sinensis var. sinensis HOM05D001181 ORTHO05D007712 1.3e-12 76.6 43 76.7
Haze_21348 Corylus avellana HOM05D001181 ORTHO05D007712 2.0e-10 69.3 56 57.1
Haze_21354 Corylus avellana HOM05D001181 ORTHO05D007712 2.0e-10 69.3 56 57.1
Peaxi162Scf01013g00230 Petunia axillaris HOM05D001181 ORTHO05D007712 7.6e-10 67.4 56 58.9
PRCOL_00002871 Prasinoderma coloniale HOM05D001181 ORTHO05D007712 1.2e-07 60.1 93 39.8
Cfa012993 Carpinus fangiana HOM05D001181 ORTHO05D007712 7.9e-07 57.4 46 63.0
Cre01.g019100 Chlamydomonas reinhardtii HOM05D001181 ORTHO05D007712 5.1e-06 54.7 78 37.2


User provided reference genes

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