Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0019358 Camellia sinensis var. sinensis HOM05D004708 ORTHO05D005573 2.6e-56 221.9 117 100.0
CSS0030971 Camellia sinensis var. sinensis HOM05D004708 ORTHO05D005573 2.6e-56 221.9 117 100.0
Actinidia19193 Actinidia chinensis HOM05D004708 ORTHO05D005573 5.3e-49 197.6 117 88.9
vmacro17822 Vaccinium macrocarpon HOM05D004708 ORTHO05D005573 3.5e-48 194.9 117 88.9
Rhsim08G0118600 Rhododendron simsii HOM05D004708 ORTHO05D005573 5.0e-47 191.0 117 87.2
Dinv13509 Davidia involucrata HOM05D004708 ORTHO05D005573 6.5e-47 190.7 117 87.2
QL06p046600 Quercus lobata HOM05D004708 ORTHO05D005573 1.8e-44 182.6 114 85.1
Thecc.03G010200 Theobroma cacao HOM05D004708 ORTHO05D005573 9.8e-43 176.8 117 78.6
Cc07_g09720 Coffea canephora HOM05D004708 ORTHO05D005573 2.2e-42 175.6 112 79.5
Cpa.g.sc6.137 Carica papaya HOM05D004708 ORTHO05D005573 3.7e-42 174.9 116 77.6
CSS0040556 Camellia sinensis var. sinensis HOM05D004708 ORTHO05D005573 4.8e-42 174.5 115 80.9
CAN.G1645.15 Capsicum annuum HOM05D004708 ORTHO05D005573 1.1e-41 173.3 112 79.5
Peaxi162Scf00008g03516 Petunia axillaris HOM05D004708 ORTHO05D005573 1.1e-41 173.3 112 80.4
MSTRG.23511 Avicennia marina HOM05D004708 ORTHO05D005573 1.4e-41 172.9 115 77.4
Nitab4.5_0000136g0310 Nicotiana tabacum HOM05D004708 ORTHO05D005573 1.4e-41 172.9 112 80.4
Sopen02g013670 Solanum pennellii HOM05D004708 ORTHO05D005573 1.4e-41 172.9 116 76.7
GSVIVG01025946001 Vitis vinifera HOM05D004708 ORTHO05D005573 1.8e-41 172.6 110 80.0
Thecc.01G032800 Theobroma cacao HOM05D004708 ORTHO05D005573 2.4e-41 172.2 114 78.1
Duzib084G0089 Durio zibethinus HOM05D004708 ORTHO05D005573 5.4e-41 171.0 114 77.2
CAN.G111.48 Capsicum annuum HOM05D004708 ORTHO05D005573 1.2e-40 169.9 112 77.7
AT2G18250 Arabidopsis thaliana HOM05D004708 ORTHO05D005573 1.6e-40 169.5 109 78.9
Ciclev10026600m.g Citrus clementina HOM05D004708 ORTHO05D005573 2.0e-40 169.1 114 77.2
PGSC0003DMG400015508 Solanum tuberosum HOM05D004708 ORTHO05D005573 2.7e-40 168.7 112 76.8
HanXRQChr09g0261341 Helianthus annuus HOM05D004708 ORTHO05D005573 3.5e-40 168.3 109 81.7
SalBow6G2211 Salvia bowleyana HOM05D004708 ORTHO05D005573 3.5e-40 168.3 115 74.8
Aqoxy3G01739 Aquilegia oxysepala HOM05D004708 ORTHO05D005573 5.9e-40 167.5 112 77.7
COL.COLO4_34048 Corchorus olitorius HOM05D004708 ORTHO05D005573 5.9e-40 167.5 117 74.4
Nitab4.5_0009165g0010 Nicotiana tabacum HOM05D000001 ORTHO05D013582 5.9e-40 167.5 106 83.0
Aa31LG8G15760 Aethionema arabicum HOM05D004708 ORTHO05D005573 7.7e-40 167.2 112 75.0
Solyc02g062640.4 Solanum lycopersicum HOM05D004708 ORTHO05D005573 7.7e-40 167.2 110 78.2
CiPaw.01G043700 Carya illinoinensis HOM05D004708 ORTHO05D005573 1.0e-39 166.8 114 77.2
Atru.chr3.607 Acer truncatum HOM05D004708 ORTHO05D005573 1.3e-39 166.4 109 80.7
AUR62004070 Chenopodium quinoa HOM05D004708 ORTHO05D005573 1.7e-39 166.0 110 76.4
ECA232G2192 Erigeron canadensis HOM05D004708 ORTHO05D005573 1.7e-39 166.0 108 81.5
Potri.005G121200 Populus trichocarpa HOM05D004708 ORTHO05D005573 1.7e-39 166.0 115 76.5
Prupe.7G156900 Prunus persica HOM05D004708 ORTHO05D005573 1.7e-39 166.0 114 78.1
GSVIVG01018936001 Vitis vinifera HOM05D004708 ORTHO05D005573 1.7e-39 166.0 108 80.6
Aqoxy5G01592 Aquilegia oxysepala HOM05D004708 ORTHO05D005573 2.3e-39 165.6 112 75.9
Gohir.A09G170800 Gossypium hirsutum HOM05D004708 ORTHO05D005573 2.3e-39 165.6 109 78.0
Sc16g0002660 Simmondsia chinensis HOM05D004708 ORTHO05D005573 2.3e-39 165.6 117 73.5
Lsat_1_v5_gn_4_148240 Lactuca sativa HOM05D004708 ORTHO05D005573 2.9e-39 165.2 112 77.7
MD02G1144700 Malus domestica HOM05D004708 ORTHO05D005573 2.9e-39 165.2 114 76.3
Gorai.006G188300 Gossypium raimondii HOM05D004708 ORTHO05D005573 3.8e-39 164.9 109 77.1
Gorai.008G067200 Gossypium raimondii HOM05D004708 ORTHO05D005573 3.8e-39 164.9 114 75.4
Hma1.2p1_0789F.1_g218250 Hydrangea macrophylla HOM05D004708 ORTHO05D005573 3.8e-39 164.9 126 71.4
Sp3g31670 Schrenkiella parvula HOM05D004708 ORTHO05D005573 3.8e-39 164.9 112 75.0
SGA_v2.0_scaffold258G45779 Striga asiatica HOM05D004708 ORTHO05D005573 3.8e-39 164.9 118 75.4
Carub.0003s3243 Capsella rubella HOM05D004708 ORTHO05D005573 5.0e-39 164.5 112 74.1
Duzib264G1087 Durio zibethinus HOM05D004708 ORTHO05D005573 5.0e-39 164.5 111 77.5
Migut.H00962 Erythranthe guttata HOM05D004708 ORTHO05D005573 5.0e-39 164.5 109 79.8
AL3G51520 Arabidopsis lyrata HOM05D004708 ORTHO05D005573 6.6e-39 164.1 109 76.1
Hund16439 Selenicereus undatus HOM05D004708 ORTHO05D005573 6.6e-39 164.1 111 72.1
DCAR_032374 Daucus carota HOM05D004708 ORTHO05D005573 8.6e-39 163.7 113 73.5
Hma1.2p1_1820F.1_g304110 Hydrangea macrophylla HOM05D004708 ORTHO05D005573 8.6e-39 163.7 110 78.2
Manes.01G136850 Manihot esculenta HOM05D004708 ORTHO05D005573 8.6e-39 163.7 117 72.6
BcaB07g31677 Brassica carinata HOM05D004708 ORTHO05D005573 1.1e-38 163.3 112 73.2
AUR62007583 Chenopodium quinoa HOM05D004708 ORTHO05D005573 1.1e-38 163.3 110 75.5
DCAR_023857 Daucus carota HOM05D004708 ORTHO05D005573 1.1e-38 163.3 113 73.5
Thhalv10022875m.g Eutrema salsugineum HOM05D004708 ORTHO05D005573 1.5e-38 162.9 112 75.0
Hma1.2p1_0224F.1_g094553 Hydrangea macrophylla HOM05D004708 ORTHO05D005573 2.5e-38 162.2 110 77.3
FvH4_1g13011 Fragaria vesca HOM05D004708 ORTHO05D005573 3.3e-38 161.8 116 74.1
PSO339G0290 Papaver somniferum HOM05D004708 ORTHO05D005573 3.3e-38 161.8 112 75.9
unitig_21.g20250 Utricularia gibba HOM05D004708 ORTHO05D005573 3.3e-38 161.8 109 77.1
COL.COLO4_22050 Corchorus olitorius HOM05D004708 ORTHO05D005573 4.2e-38 161.4 113 78.8
RcHm_v2.0_Chr2g0101171 Rosa chinensis HOM05D004708 ORTHO05D005573 5.5e-38 161.0 116 74.1
TWI53G1618 Tripterygium wilfordii HOM05D004708 ORTHO05D005573 9.5e-38 160.2 111 73.9
BcaC04g22917 Brassica carinata HOM05D004708 ORTHO05D005573 1.2e-37 159.8 112 72.3
MD15G1258400 Malus domestica HOM05D004708 ORTHO05D005573 1.2e-37 159.8 117 73.5
Medtr5g020680 Medicago truncatula HOM05D004708 ORTHO05D005573 1.2e-37 159.8 112 75.0
Medtr8g073890 Medicago truncatula HOM05D004708 ORTHO05D005573 1.6e-37 159.5 109 77.1
Gohir.D09G166500 Gossypium hirsutum HOM05D004708 ORTHO05D005573 2.1e-37 159.1 109 74.3
Lj2g0001027 Lotus japonicus HOM05D002605 ORTHO05D002842 2.1e-37 159.1 113 70.8
A07p02450 Brassica napus HOM05D004708 ORTHO05D005573 2.8e-37 158.7 109 74.3
BolC9t54282H Brassica oleracea HOM05D004708 ORTHO05D005573 2.8e-37 158.7 112 71.4
BraA07t28041Z Brassica rapa HOM05D004708 ORTHO05D005573 2.8e-37 158.7 109 74.3
CARHR108820 Cardamine hirsuta HOM05D004708 ORTHO05D005573 2.8e-37 158.7 112 71.4
PSO764G0091 Papaver somniferum HOM05D004708 ORTHO05D005573 2.8e-37 158.7 112 75.0
Ca_21297_v3 Cicer arietinum L. HOM05D004708 ORTHO05D005573 3.6e-37 158.3 113 73.5
ClCG05G006010 Citrullus lanatus HOM05D000319 ORTHO05D000903 3.6e-37 158.3 109 74.3
BcaC06g36391 Brassica carinata HOM05D004708 ORTHO05D005573 4.7e-37 157.9 109 73.4
Lalb_Chr05g0212721 Lupinus albus HOM05D004708 ORTHO05D005573 4.7e-37 157.9 113 72.6
ATR0796G251 Amborella trichopoda HOM05D004708 ORTHO05D005573 6.1e-37 157.5 109 73.4
Ca_24863_v3 Cicer arietinum L. HOM05D004708 ORTHO05D005573 6.1e-37 157.5 112 74.1
TPR.G2405 Trifolium pratense HOM05D004708 ORTHO05D005573 6.1e-37 157.5 112 72.3
BcaB03g16615 Brassica carinata HOM05D004708 ORTHO05D005573 1.4e-36 156.4 112 71.4
MELO3C006648.2 Cucumis melo HOM05D004708 ORTHO05D005573 1.4e-36 156.4 109 72.5
Manes.02G095600 Manihot esculenta HOM05D004708 ORTHO05D005573 1.8e-36 156.0 112 73.2
PSO731G0046 Papaver somniferum HOM05D004708 ORTHO05D005573 3.0e-36 155.2 112 73.2
PGR119G0658 Punica granatum HOM05D004708 ORTHO05D005573 3.0e-36 155.2 116 72.4
arahy.Tifrunner.gnm1.ann1.CZ32YF Arachis hypogaea HOM05D004708 ORTHO05D005573 4.0e-36 154.8 112 72.3
A09p11790 Brassica napus HOM05D004708 ORTHO05D005573 4.0e-36 154.8 114 68.4
TAR624G0473 Trochodendron aralioides HOM05D004708 ORTHO05D005573 4.0e-36 154.8 114 70.2
BolC7t40861H Brassica oleracea HOM05D004708 ORTHO05D005573 5.2e-36 154.5 109 72.5
Psat2g158360 Pisum sativum HOM05D004708 ORTHO05D005573 5.2e-36 154.5 112 70.5
VMungo1215G3002 Vigna mungo HOM05D004708 ORTHO05D005573 8.9e-36 153.7 112 67.9
EL10Ac6g15543 Beta vulgaris HOM05D004708 ORTHO05D005573 1.2e-35 153.3 119 68.9
C07p04600 Brassica napus HOM05D004708 ORTHO05D005573 1.2e-35 153.3 109 71.6
THA.LOC104807464 Tarenaya hassleriana HOM05D004708 ORTHO05D005573 1.2e-35 153.3 111 72.1
Hund13990 Selenicereus undatus HOM05D004708 ORTHO05D005573 1.5e-35 152.9 114 66.7
CsaV3_3G014460 Cucumis sativus L. HOM05D004708 ORTHO05D005573 2.0e-35 152.5 110 72.7
Glyma.01G173050 Glycine max HOM05D004708 ORTHO05D005573 3.4e-35 151.8 112 68.8
Actinidia33865 Actinidia chinensis HOM05D004708 ORTHO05D005573 7.5e-35 150.6 94 87.2
arahy.Tifrunner.gnm1.ann1.Y7U3HW Arachis hypogaea HOM05D004708 ORTHO05D005573 7.5e-35 150.6 112 69.6
Zm00001eb231510 Zea mays HOM05D004708 ORTHO05D005573 7.5e-35 150.6 114 63.2
arahy.Tifrunner.gnm1.ann1.V6C6W3 Arachis hypogaea HOM05D004708 ORTHO05D005573 9.8e-35 150.2 112 70.5
Lsat_1_v5_gn_2_77221 Lactuca sativa HOM05D004708 ORTHO05D005573 9.8e-35 150.2 107 75.7
FAN25G0668 Fragaria x ananassa HOM05D004708 ORTHO05D005573 1.7e-34 149.4 109 70.6
Phvul.002G032200 Phaseolus vulgaris HOM05D004708 ORTHO05D005573 3.7e-34 148.3 112 66.1
FAN19G0555 Fragaria x ananassa HOM05D004708 ORTHO05D005573 1.8e-33 146.0 135 62.2
arahy.Tifrunner.gnm1.ann1.KFYL3R Arachis hypogaea HOM05D004708 ORTHO05D005573 9.2e-33 143.7 112 69.6
Os07g0179400 Oryza sativa ssp. japonica HOM05D004708 ORTHO05D005573 9.2e-33 143.7 114 63.2
CARHR108850 Cardamine hirsuta HOM05D004708 ORTHO05D005573 1.2e-32 143.3 98 72.4
ECA238G4849 Erigeron canadensis HOM05D004708 ORTHO05D005573 2.0e-32 142.5 107 70.1
Sabra05G0099900 Salix brachista HOM05D004708 ORTHO05D005573 7.8e-32 140.6 160 55.0
SEGI_37374 Sequoiadendron giganteum HOM05D004708 ORTHO05D005573 1.0e-31 140.2 113 65.5
HPP92_014750 Vanilla planifolia HOM05D004708 ORTHO05D005573 1.0e-31 140.2 112 63.4
Os02g0134000 Oryza sativa ssp. japonica HOM05D004708 ORTHO05D005573 2.9e-31 138.7 105 64.8
CAN.G2875.1 Capsicum annuum HOM05D004708 ORTHO05D005573 5.0e-31 137.9 107 69.2
MD15G1258500 Malus domestica HOM05D004708 ORTHO05D005573 8.6e-31 137.1 114 64.0
CDE12G0116 Ceratophyllum demersum HOM05D004708 ORTHO05D005573 4.3e-30 134.8 109 64.2
AagrBONN_evm.TU.Sc2ySwM_228.2017 Anthoceros agrestis HOM05D004708 ORTHO05D005573 9.5e-30 133.7 110 65.5
FAN21G0333 Fragaria x ananassa HOM05D004708 ORTHO05D005573 9.5e-30 133.7 108 63.9
BcaC04g22919 Brassica carinata HOM05D004708 ORTHO05D005573 1.6e-29 132.9 112 65.2
SMO357G0013 Selaginella moellendorffii HOM05D004708 ORTHO05D005573 1.6e-29 132.9 108 66.7
Dinv39998 Davidia involucrata HOM05D004708 ORTHO05D005573 2.1e-29 132.5 117 66.7
Zm00001eb301320 Zea mays HOM05D004708 ORTHO05D005573 2.1e-29 132.5 109 60.6
BraA09t36827Z Brassica rapa HOM05D004708 ORTHO05D005573 2.8e-29 132.1 103 68.0
Gohir.A12G064100 Gossypium hirsutum HOM05D004708 ORTHO05D005573 2.8e-29 132.1 89 77.5
Pp3c18_16890 Physcomitrium patens HOM05D004708 ORTHO05D005573 2.8e-29 132.1 111 61.3
CDE01G0816 Ceratophyllum demersum HOM05D004708 ORTHO05D005573 6.1e-29 131.0 109 63.3
SMO318G0001 Selaginella moellendorffii HOM05D004708 ORTHO05D005573 6.1e-29 131.0 124 60.5
PSO384G2349 Papaver somniferum HOM05D004708 ORTHO05D005573 8.0e-29 130.6 96 72.9
Glyma.02G276900 Glycine max HOM05D004708 ORTHO05D005573 5.8e-27 124.4 84 71.4
Lj2A454G55 Lonicera japonica HOM05D004708 ORTHO05D005573 4.1e-25 118.2 70 82.9
Pp3c18_18790 Physcomitrium patens HOM05D004708 ORTHO05D005573 1.6e-24 116.3 87 69.0
arahy.Tifrunner.gnm1.ann1.W5EA8A Arachis hypogaea HOM05D004708 ORTHO05D005573 2.3e-23 112.5 88 68.2
Mapoly0065s0018 Marchantia polymorpha HOM05D004708 ORTHO05D005573 1.1e-22 110.2 108 57.4
FvH4_3g26020 Fragaria vesca HOM05D004708 ORTHO05D005573 3.3e-22 108.6 80 67.5
AagrBONN_evm.TU.Sc2ySwM_368.1168 Anthoceros agrestis HOM05D004708 ORTHO05D005573 4.7e-21 104.8 70 75.7
C09p13900 Brassica napus HOM05D004708 ORTHO05D005573 3.4e-19 98.6 114 52.6
CBR_g4476 Chara braunii HOM05D003322 ORTHO05D004228 2.9e-18 95.5 109 46.8
C09p74780 Brassica napus HOM05D004708 ORTHO05D005573 1.1e-17 93.6 59 79.7
C09p74830 Brassica napus HOM05D004708 ORTHO05D005573 1.1e-17 93.6 59 79.7
SGA_v2.0_scaffold276G46612 Striga asiatica HOM05D004708 ORTHO05D005573 4.1e-17 91.7 118 50.8
Peaxi162Scf00130g00618 Petunia axillaris HOM05D004708 ORTHO05D005573 2.7e-16 89.0 111 47.7
Gohir.D12G064000 Gossypium hirsutum HOM05D004708 ORTHO05D005573 1.0e-15 87.0 57 73.7
FAN11G2897 Fragaria x ananassa HOM05D004708 ORTHO05D009899 6.6e-15 84.3 112 48.2
CAN.G53.15 Capsicum annuum HOM05D004708 ORTHO05D005573 1.6e-13 79.7 58 75.9
Nn7g38122 Nelumbo nucifera HOM05D004708 ORTHO05D005573 5.2e-12 74.7 57 61.4
BcaC06g36392 Brassica carinata HOM05D000492 ORTHO05D005571 6.8e-12 74.3 52 73.1
Oeu044133.1 Olea europaea HOM05D004708 ORTHO05D005573 2.6e-11 72.4 43 81.4
Cre13.g590550 Chlamydomonas reinhardtii HOM05D004708 ORTHO05D005573 6.4e-10 67.8 90 35.6
Cfa027114 Carpinus fangiana HOM05D004708 ORTHO05D005573 3.9e-07 58.5 83 41.0
arahy.Tifrunner.gnm1.ann1.7621NS Arachis hypogaea HOM05D054750 ORTHO05D005573 3.3e-06 55.5 32 81.2
MCO08G231 Micromonas commoda HOM05D004708 ORTHO05D005573 9.5e-06 53.9 113 33.6


User provided reference genes

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