Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0019336 Camellia sinensis var. sinensis HOM05D005125 ORTHO05D006777 4.2e-175 617.8 300 100.0
CSS0022218 Camellia sinensis var. sinensis HOM05D005125 ORTHO05D006777 4.2e-175 617.8 300 100.0
Rhsim07G0254900 Rhododendron simsii HOM05D005125 ORTHO05D006777 1.9e-154 549.3 300 87.7
Dinv31939 Davidia involucrata HOM05D005125 ORTHO05D006777 4.1e-154 548.1 300 86.3
Hma1.2p1_0507F.1_g168460 Hydrangea macrophylla HOM05D005125 ORTHO05D006777 7.1e-154 547.4 296 87.5
Actinidia37922 Actinidia chinensis HOM05D005125 ORTHO05D006777 2.3e-152 542.3 300 87.0
Actinidia28601 Actinidia chinensis HOM05D005125 ORTHO05D006777 4.4e-148 528.1 331 79.5
Rhsim06G0007400 Rhododendron simsii HOM05D005125 ORTHO05D006777 5.8e-148 527.7 296 83.1
vmacro21811 Vaccinium macrocarpon HOM05D005125 ORTHO05D006777 2.9e-147 525.4 305 83.0
Lj4A11T69 Lonicera japonica HOM05D005125 ORTHO05D006777 2.4e-146 522.3 300 83.3
GSVIVG01013360001 Vitis vinifera HOM05D005125 ORTHO05D006777 1.6e-145 519.6 302 80.5
TAR625G0173 Trochodendron aralioides HOM05D005125 ORTHO05D006777 2.1e-145 519.2 302 81.5
Solyc04g082340.3 Solanum lycopersicum HOM05D005125 ORTHO05D006777 2.3e-144 515.8 298 81.9
Sopen04g035960 Solanum pennellii HOM05D005125 ORTHO05D006777 2.3e-144 515.8 298 81.9
CiPaw.07G138900 Carya illinoinensis HOM05D005125 ORTHO05D006777 3.0e-144 515.4 302 80.1
Haze_22773 Corylus avellana HOM05D005125 ORTHO05D006777 1.2e-142 510.0 302 79.5
Cpa.g.sc26.198 Carica papaya HOM05D005125 ORTHO05D006777 6.2e-142 507.7 302 79.5
Migut.C00961 Erythranthe guttata HOM05D005125 ORTHO05D006777 1.1e-141 506.9 300 80.7
vmacro04403 Vaccinium macrocarpon HOM05D005125 ORTHO05D006777 1.4e-141 506.5 334 76.9
PGSC0003DMG400009979 Solanum tuberosum HOM05D005125 ORTHO05D006777 2.4e-141 505.8 309 79.0
CAN.G311.115 Capsicum annuum HOM05D005125 ORTHO05D006777 8.9e-141 503.8 304 79.6
Cfa014076 Carpinus fangiana HOM05D005125 ORTHO05D006777 8.9e-141 503.8 302 78.8
Cc10_g00670 Coffea canephora HOM05D005125 ORTHO05D006777 3.4e-140 501.9 299 79.3
TWI56G0714 Tripterygium wilfordii HOM05D005125 ORTHO05D006777 3.4e-140 501.9 301 79.4
Ca_15433_v3 Cicer arietinum L. HOM05D005125 ORTHO05D006777 1.3e-139 500.0 301 78.7
Gohir.A01G105600 Gossypium hirsutum HOM05D005125 ORTHO05D006777 1.7e-139 499.6 300 78.7
Prupe.1G354500 Prunus persica HOM05D005125 ORTHO05D006777 2.2e-139 499.2 302 77.8
Manes.05G134400 Manihot esculenta HOM05D005125 ORTHO05D006777 3.8e-139 498.4 293 79.9
Manes.18G005400 Manihot esculenta HOM05D005125 ORTHO05D006777 3.8e-139 498.4 301 79.1
QL02p014036 Quercus lobata HOM05D005125 ORTHO05D006777 3.8e-139 498.4 301 77.1
Potri.002G010800 Populus trichocarpa HOM05D005125 ORTHO05D006777 4.9e-139 498.0 302 77.8
Medtr3g115290 Medicago truncatula HOM05D005125 ORTHO05D006777 8.4e-139 497.3 301 78.4
Gohir.D01G091900 Gossypium hirsutum HOM05D005125 ORTHO05D006777 1.4e-138 496.5 300 78.3
Gorai.002G117000 Gossypium raimondii HOM05D005125 ORTHO05D006777 3.2e-138 495.4 300 78.0
MD15G1002000 Malus domestica HOM05D005125 ORTHO05D006777 4.2e-138 495.0 303 78.2
Peaxi162Scf00893g00037 Petunia axillaris HOM05D005125 ORTHO05D006777 5.4e-138 494.6 298 80.2
Sabra05G0193900 Salix brachista HOM05D005125 ORTHO05D006777 5.4e-138 494.6 302 76.8
Potri.005G250300 Populus trichocarpa HOM05D005125 ORTHO05D006777 7.1e-138 494.2 302 76.5
Lalb_Chr11g0061631 Lupinus albus HOM05D005125 ORTHO05D006777 9.3e-138 493.8 296 78.4
Duzib116G0840 Durio zibethinus HOM05D005125 ORTHO05D006777 1.6e-137 493.0 302 79.5
HanXRQChr06g0183991 Helianthus annuus HOM05D005125 ORTHO05D006777 1.6e-137 493.0 300 76.0
Glyma.06G018200 Glycine max HOM05D005125 ORTHO05D006777 2.1e-137 492.7 301 78.4
Thecc.08G058900 Theobroma cacao HOM05D005125 ORTHO05D006777 2.1e-137 492.7 302 78.8
SalBow7G1095 Salvia bowleyana HOM05D005125 ORTHO05D006777 2.7e-137 492.3 310 77.4
Ciclev10003241m.g Citrus clementina HOM05D005125 ORTHO05D006777 3.5e-137 491.9 288 79.5
CiPaw.08G073000 Carya illinoinensis HOM05D005125 ORTHO05D006777 4.6e-137 491.5 303 76.6
SGA_v2.0_scaffold108G30863 Striga asiatica HOM05D005125 ORTHO05D006777 4.6e-137 491.5 312 76.0
Lsat_1_v5_gn_2_5181 Lactuca sativa HOM05D005125 ORTHO05D006777 7.8e-137 490.7 300 76.7
Nitab4.5_0000588g0110 Nicotiana tabacum HOM05D005125 ORTHO05D006777 7.8e-137 490.7 293 80.5
ECA238G0848 Erigeron canadensis HOM05D005125 ORTHO05D006777 3.9e-136 488.4 300 77.0
Duzib093G0577 Durio zibethinus HOM05D005125 ORTHO05D006777 5.1e-136 488.0 302 78.1
Phvul.009G010800 Phaseolus vulgaris HOM05D005125 ORTHO05D006777 6.6e-136 487.6 301 77.1
Glyma.04G017900 Glycine max HOM05D005125 ORTHO05D006777 1.1e-135 486.9 301 77.4
MD08G1002400 Malus domestica HOM05D005125 ORTHO05D006777 1.1e-135 486.9 303 77.2
TPR.G38202 Trifolium pratense HOM05D005125 ORTHO05D006777 1.5e-135 486.5 302 76.8
CANSAT25G1708 Cannabis sativa HOM05D005125 ORTHO05D006777 2.5e-135 485.7 302 76.5
FAN27G2626 Fragaria x ananassa HOM05D005125 ORTHO05D006777 4.3e-135 485.0 302 77.2
Aqoxy6G01728 Aquilegia oxysepala HOM05D005125 ORTHO05D006777 7.3e-135 484.2 304 76.3
PSO541G3228 Papaver somniferum HOM05D005125 ORTHO05D006777 7.3e-135 484.2 293 77.8
Lj1g0005535 Lotus japonicus HOM05D005125 ORTHO05D006777 9.6e-135 483.8 301 77.1
RcHm_v2.0_Chr6g0304271 Rosa chinensis HOM05D005125 ORTHO05D006777 9.6e-135 483.8 302 76.5
FvH4_2g37450 Fragaria vesca HOM05D005125 ORTHO05D006777 1.6e-134 483.0 302 76.8
ClCG08G009440 Citrullus lanatus HOM05D005125 ORTHO05D006777 2.8e-134 482.3 302 76.8
PGR083G1107 Punica granatum HOM05D005125 ORTHO05D006777 6.2e-134 481.1 302 76.2
Atru.chr13.135 Acer truncatum HOM05D005125 ORTHO05D006777 1.4e-133 479.9 289 77.5
Lalb_Chr23g0265791 Lupinus albus HOM05D005125 ORTHO05D006777 2.4e-133 479.2 302 75.5
PSO675G8084 Papaver somniferum HOM05D005125 ORTHO05D006777 3.1e-133 478.8 293 76.8
CsaV3_6G031580 Cucumis sativus L. HOM05D005125 ORTHO05D006777 9.0e-133 477.2 302 76.8
THA.LOC104813172 Tarenaya hassleriana HOM05D005125 ORTHO05D006777 1.5e-132 476.5 288 76.0
FAN20G1306 Fragaria x ananassa HOM05D005125 ORTHO05D006777 3.4e-132 475.3 302 75.8
Eucgr.L00923 Eucalyptus grandis HOM05D005125 ORTHO05D006777 9.9e-132 473.8 302 75.2
FAN15G0126 Fragaria x ananassa HOM05D005125 ORTHO05D006777 1.9e-130 469.5 316 73.1
Sed0024407 Sechium edule HOM05D005125 ORTHO05D006777 4.2e-130 468.4 304 74.7
BcaC04g22006 Brassica carinata HOM05D005125 ORTHO05D006777 1.7e-128 463.0 286 75.5
C09p24930 Brassica napus HOM05D005125 ORTHO05D006777 1.7e-128 463.0 286 75.5
BcaB07g31085 Brassica carinata HOM05D005125 ORTHO05D006777 3.0e-128 462.2 287 75.3
Thhalv10027780m.g Eutrema salsugineum HOM05D005125 ORTHO05D006777 3.9e-128 461.8 286 74.8
A09p19570 Brassica napus HOM05D005125 ORTHO05D006777 5.1e-128 461.5 286 74.8
AL8G19280 Arabidopsis lyrata HOM05D005125 ORTHO05D006777 8.7e-128 460.7 285 75.1
BraA09t37570Z Brassica rapa HOM05D005125 ORTHO05D006777 8.7e-128 460.7 286 74.8
Aa31LG9G12440 Aethionema arabicum HOM05D005125 ORTHO05D006777 2.5e-127 459.1 295 72.9
AT5G42320 Arabidopsis thaliana HOM05D005125 ORTHO05D006777 4.3e-127 458.4 284 75.4
arahy.Tifrunner.gnm1.ann1.1X7ZBM Arachis hypogaea HOM05D005125 ORTHO05D006777 4.3e-127 458.4 314 72.3
arahy.Tifrunner.gnm1.ann1.VXG7Z6 Arachis hypogaea HOM05D005125 ORTHO05D006777 5.6e-127 458.0 314 72.3
EL10Ac1g01960 Beta vulgaris HOM05D005125 ORTHO05D006777 1.3e-126 456.8 300 70.7
Lsat_1_v5_gn_8_26201 Lactuca sativa HOM05D005125 ORTHO05D006777 2.1e-126 456.1 290 72.4
Carub.0008s0686 Capsella rubella HOM05D005125 ORTHO05D006777 4.8e-126 454.9 285 74.0
CARHR284930 Cardamine hirsuta HOM05D005125 ORTHO05D006777 2.4e-125 452.6 286 73.1
Sp7g08250 Schrenkiella parvula HOM05D005125 ORTHO05D006777 3.1e-125 452.2 285 73.7
Duzib041G0467 Durio zibethinus HOM05D005125 ORTHO05D006777 6.9e-125 451.1 302 73.8
COL.COLO4_06662 Corchorus olitorius HOM05D005125 ORTHO05D006777 2.0e-124 449.5 281 76.9
AUR62036871 Chenopodium quinoa HOM05D005125 ORTHO05D006777 5.5e-122 441.4 300 69.0
MD12G1003300 Malus domestica HOM05D005125 ORTHO05D006777 2.3e-120 436.0 350 64.6
Ah.00g000800 Amaranthus hybridus HOM05D005125 ORTHO05D006777 6.7e-120 434.5 313 66.8
Ca_15458_v3 Cicer arietinum L. HOM05D005125 ORTHO05D006777 6.7e-120 434.5 254 78.3
EL10Ac7g16836 Beta vulgaris HOM05D005125 ORTHO05D006777 2.8e-118 429.1 297 69.0
Nn5g30942 Nelumbo nucifera HOM05D005125 ORTHO05D006777 5.3e-117 424.9 252 77.8
unitig_747.g21516 Utricularia gibba HOM05D005125 ORTHO05D006777 1.3e-115 420.2 291 70.1
MBI08_g41521_MAGBIO Magnolia biondii HOM05D005125 ORTHO05D006777 8.4e-115 417.5 313 66.8
Os02g0119300 Oryza sativa ssp. japonica HOM05D005125 ORTHO05D006777 1.5e-111 406.8 289 68.2
VMungo1309G1587 Vigna mungo HOM05D005125 ORTHO05D006777 9.6e-111 404.1 254 73.6
Zm00001eb209310 Zea mays HOM05D005125 ORTHO05D006777 1.1e-109 400.6 298 67.8
Hund05112 Selenicereus undatus HOM05D005125 ORTHO05D006777 5.3e-109 398.3 259 71.0
DCAR_016769 Daucus carota HOM05D005125 ORTHO05D006777 3.4e-108 395.6 259 73.7
ATR0661G305 Amborella trichopoda HOM05D005125 ORTHO05D006777 5.0e-107 391.7 297 64.0
HPP92_007117 Vanilla planifolia HOM05D005125 ORTHO05D006777 1.9e-106 389.8 282 67.4
SHI07997 Sapria himalayana HOM05D005125 ORTHO05D006777 6.7e-104 381.3 328 58.2
Eucgr.E03516 Eucalyptus grandis HOM05D005125 ORTHO05D006777 1.5e-103 380.2 302 64.6
CDE05G1644 Ceratophyllum demersum HOM05D005125 ORTHO05D006777 9.0e-101 370.9 257 66.5
MELO3C026539.2 Cucumis melo HOM05D005125 ORTHO05D006777 9.0e-101 370.9 222 76.6
ECA238G3411 Erigeron canadensis HOM05D005125 ORTHO05D006777 7.4e-95 351.3 204 77.9
Gorai.009G188100 Gossypium raimondii HOM05D005125 ORTHO05D006777 7.4e-95 351.3 212 74.5
Gohir.D05G182800 Gossypium hirsutum HOM05D005125 ORTHO05D006777 2.2e-94 349.7 212 74.1
Sc15g0004430 Simmondsia chinensis HOM05D005125 ORTHO05D006777 6.3e-94 348.2 196 80.6
Gohir.A05G179600 Gossypium hirsutum HOM05D005125 ORTHO05D006777 2.6e-92 342.8 212 72.6
AagrBONN_evm.TU.Sc2ySwM_362.2863 Anthoceros agrestis HOM05D005125 ORTHO05D006777 2.3e-80 303.1 209 64.6
SGA_v2.0_scaffold195G40773 Striga asiatica HOM05D005125 ORTHO05D006777 3.0e-80 302.8 202 70.8
Mapoly0045s0063 Marchantia polymorpha HOM05D005125 ORTHO05D006777 1.4e-77 293.9 210 63.8
Dinv05534 Davidia involucrata HOM05D005125 ORTHO05D006777 6.5e-75 285.0 149 88.6
SMO358G0159 Selaginella moellendorffii HOM05D005125 ORTHO05D006777 2.5e-74 283.1 184 68.5
Pp3c20_16570 Physcomitrium patens HOM05D005125 ORTHO05D006777 4.7e-73 278.9 294 48.0
Psat5g159120 Pisum sativum HOM05D005125 ORTHO05D006777 4.5e-68 262.3 147 79.6
MD00G1076900 Malus domestica HOM05D005125 ORTHO05D006777 1.3e-67 260.8 230 61.3
BcaNung05254 Brassica carinata HOM05D005125 ORTHO05D006777 6.1e-65 251.9 169 69.8
PRCOL_00006814 Prasinoderma coloniale HOM05D005125 ORTHO05D006777 1.2e-60 237.7 200 54.0
Cre11.g467631 Chlamydomonas reinhardtii HOM05D005125 ORTHO05D006777 5.9e-60 235.3 212 53.8
ECA233G3085 Erigeron canadensis HOM05D000006 ORTHO05D000001 1.2e-49 201.1 120 74.2
SEGI_37631 Sequoiadendron giganteum HOM05D005125 ORTHO05D006777 1.1e-45 188.0 135 60.0
SEGI_03459 Sequoiadendron giganteum HOM05D005125 ORTHO05D006777 5.2e-40 169.1 100 76.0
MCO16G405 Micromonas commoda HOM05D005125 ORTHO05D006777 5.4e-37 159.1 140 51.4
BcaNung05255 Brassica carinata HOM05D005125 ORTHO05D006777 3.5e-36 156.4 79 86.1
ECA238G2450 Erigeron canadensis HOM05D000240 ORTHO05D002721 1.2e-33 147.9 181 45.3
Oeu035185.1 Olea europaea HOM05D005125 ORTHO05D006777 6.4e-30 135.6 92 77.2
SGA_v2.0_scaffold83G26467 Striga asiatica HOM05D005125 ORTHO05D006777 3.5e-28 129.8 241 37.3
Sc15g0004440 Simmondsia chinensis HOM05D005125 ORTHO05D006777 6.0e-28 129.0 122 54.1
PRCOL_00005708 Prasinoderma coloniale HOM05D005125 ORTHO05D034490 5.2e-24 115.9 237 32.9
Oeu056206.2 Olea europaea HOM05D005125 ORTHO05D006777 6.4e-22 109.0 58 89.7
Cre16.g668950 Chlamydomonas reinhardtii HOM05D005125 ORTHO05D034490 3.5e-20 103.2 179 34.1
Lsat_1_v5_gn_1_87521 Lactuca sativa HOM05D005125 ORTHO05D007904 3.5e-20 103.2 63 69.8
Cc00_g07920 Coffea canephora HOM05D005125 ORTHO05D006777 1.3e-19 101.3 101 56.4
Cc10_g14360 Coffea canephora HOM05D005125 ORTHO05D006777 1.1e-16 91.7 58 72.4
TPR.G33884 Trifolium pratense HOM05D005125 ORTHO05D006777 4.0e-16 89.7 52 75.0
C04p25390 Brassica napus HOM05D005125 ORTHO05D041222 3.1e-08 63.5 76 40.8
BolC4t24047H Brassica oleracea HOM05D005125 ORTHO05D041222 3.1e-08 63.5 76 40.8
BolC9t55384H Brassica oleracea HOM05D005125 ORTHO05D006777 8.4e-06 55.5 37 73.0


User provided reference genes

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