Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0019331 Camellia sinensis var. sinensis HOM05D006774 ORTHO05D008411 6.6e-247 857.1 478 100.0
CSS0040526 Camellia sinensis var. sinensis HOM05D006774 ORTHO05D008411 2.2e-210 735.7 395 99.5
vmacro05013 Vaccinium macrocarpon HOM05D006774 ORTHO05D008411 9.2e-164 580.9 355 82.0
vmacro23279 Vaccinium macrocarpon HOM05D006774 ORTHO05D008411 9.2e-164 580.9 355 82.0
Sopen01g042680 Solanum pennellii HOM05D006774 ORTHO05D008411 3.6e-160 568.9 444 67.1
PGSC0003DMG400024686 Solanum tuberosum HOM05D006774 ORTHO05D008411 1.0e-159 567.4 438 67.8
RhsimUnG0226700 Rhododendron simsii HOM05D006774 ORTHO05D008411 1.3e-157 560.5 350 79.4
TAR633G1323 Trochodendron aralioides HOM05D006774 ORTHO05D008411 1.3e-157 560.5 445 66.3
CAN.G1034.42 Capsicum annuum HOM05D006774 ORTHO05D008411 2.9e-157 559.3 439 66.5
MSTRG.20428 Avicennia marina HOM05D006774 ORTHO05D008411 1.2e-155 553.9 442 63.6
QL03p007112 Quercus lobata HOM05D006774 ORTHO05D008411 1.0e-154 550.8 482 65.1
MD12G1218600 Malus domestica HOM05D006774 ORTHO05D008411 3.9e-154 548.9 444 63.7
Cc02_g33360 Coffea canephora HOM05D006774 ORTHO05D008411 8.1e-152 541.2 430 66.7
CiPaw.10G139100 Carya illinoinensis HOM05D006774 ORTHO05D008411 2.6e-150 536.2 495 56.8
MD04G1204900 Malus domestica HOM05D006774 ORTHO05D008411 6.4e-149 531.6 444 64.0
Migut.N02011 Erythranthe guttata HOM05D006774 ORTHO05D008411 4.1e-148 528.9 446 62.3
CANSAT54G0432 Cannabis sativa HOM05D006774 ORTHO05D008411 5.4e-148 528.5 455 59.8
EL10Ac4g09357 Beta vulgaris HOM05D006774 ORTHO05D008411 9.2e-148 527.7 444 61.5
TWI56G0431 Tripterygium wilfordii HOM05D006774 ORTHO05D008411 9.2e-148 527.7 483 57.6
Lj9C83T13 Lonicera japonica HOM05D006774 ORTHO05D008411 8.6e-146 521.2 359 74.4
Prupe.6G324900 Prunus persica HOM05D006774 ORTHO05D008411 7.3e-145 518.1 446 61.4
Cfa006593 Carpinus fangiana HOM05D006774 ORTHO05D008411 9.5e-145 517.7 484 59.7
TWI12G1162 Tripterygium wilfordii HOM05D006774 ORTHO05D008411 2.1e-144 516.5 485 58.8
Lsat_1_v5_gn_9_86761 Lactuca sativa HOM05D006774 ORTHO05D008411 2.8e-144 516.2 413 62.2
Gohir.A13G107700 Gossypium hirsutum HOM05D006774 ORTHO05D008411 1.4e-143 513.8 447 60.4
Cpa.g.sc48.60 Carica papaya HOM05D006774 ORTHO05D008411 1.8e-143 513.5 482 57.7
Eucgr.C01256 Eucalyptus grandis HOM05D006774 ORTHO05D008411 3.1e-143 512.7 440 62.0
PGR031G3046 Punica granatum HOM05D006774 ORTHO05D008411 6.8e-143 511.5 454 59.7
arahy.Tifrunner.gnm1.ann1.V1E923 Arachis hypogaea HOM05D006774 ORTHO05D008411 9.9e-142 507.7 424 63.9
FAN09G1854 Fragaria x ananassa HOM05D006774 ORTHO05D008411 1.7e-141 506.9 408 61.0
Aqoxy5G00494 Aquilegia oxysepala HOM05D006774 ORTHO05D008411 3.7e-141 505.8 407 60.9
Lj9C82T10 Lonicera japonica HOM05D006774 ORTHO05D008411 1.1e-140 504.2 344 75.0
Thecc.05G302500 Theobroma cacao HOM05D006774 ORTHO05D008411 1.4e-140 503.8 430 62.3
arahy.Tifrunner.gnm1.ann1.ST8CS6 Arachis hypogaea HOM05D006774 ORTHO05D008411 1.9e-140 503.4 423 62.9
FvH4_6g06010 Fragaria vesca HOM05D006774 ORTHO05D008411 2.4e-140 503.1 413 59.8
Potri.013G021500 Populus trichocarpa HOM05D006774 ORTHO05D008411 5.4e-140 501.9 448 61.8
Glyma.03G237400 Glycine max HOM05D006774 ORTHO05D008411 9.2e-140 501.1 444 60.4
Atru.chr2.394 Acer truncatum HOM05D006774 ORTHO05D008411 1.2e-139 500.7 446 60.5
Glyma.19G235000 Glycine max HOM05D006774 ORTHO05D008411 1.6e-139 500.4 428 62.4
PSO782G5565 Papaver somniferum HOM05D006774 ORTHO05D008411 1.0e-138 497.7 445 58.2
FAN02G0725 Fragaria x ananassa HOM05D006774 ORTHO05D008411 1.3e-138 497.3 438 59.4
Duzib177G0798 Durio zibethinus HOM05D006774 ORTHO05D008411 1.7e-138 496.9 448 60.5
MBI04_g29615_MAGBIO Magnolia biondii HOM05D006774 ORTHO05D008411 5.1e-138 495.4 440 58.0
HanXRQChr11g0338551 Helianthus annuus HOM05D006774 ORTHO05D008411 1.5e-137 493.8 395 62.5
PSO478G4979 Papaver somniferum HOM05D006774 ORTHO05D008411 1.2e-136 490.7 450 58.9
ClCG03G016980 Citrullus lanatus HOM05D006774 ORTHO05D008411 2.1e-136 490.0 431 60.6
Hund07075 Selenicereus undatus HOM05D006774 ORTHO05D008411 2.8e-136 489.6 432 62.7
FAN05G2700 Fragaria x ananassa HOM05D006774 ORTHO05D008411 8.1e-136 488.0 391 61.4
Gorai.013G124300 Gossypium raimondii HOM05D006774 ORTHO05D008411 1.8e-135 486.9 427 60.2
FAN05G0244 Fragaria x ananassa HOM05D006774 ORTHO05D008411 2.4e-135 486.5 394 61.7
Lj9C84T1 Lonicera japonica HOM05D006774 ORTHO05D008411 2.0e-134 483.4 330 74.2
THA.LOC104805877 Tarenaya hassleriana HOM05D006774 ORTHO05D008411 4.4e-134 482.3 452 58.0
Haze_04191 Corylus avellana HOM05D006774 ORTHO05D008411 1.7e-133 480.3 411 59.1
VMungo0540G2441 Vigna mungo HOM05D006774 ORTHO05D008411 3.8e-133 479.2 381 63.8
Sc09g0003160 Simmondsia chinensis HOM05D006774 ORTHO05D008411 1.9e-132 476.9 438 58.9
Lalb_Chr18g0045661 Lupinus albus HOM05D006774 ORTHO05D008411 2.4e-132 476.5 432 58.3
Ah.06g189400 Amaranthus hybridus HOM05D006774 ORTHO05D008411 3.2e-132 476.1 432 56.5
AL1G65540 Arabidopsis lyrata HOM05D006774 ORTHO05D008411 3.2e-132 476.1 485 55.9
RcHm_v2.0_Chr3g0454971 Rosa chinensis HOM05D006774 ORTHO05D008411 4.2e-132 475.7 390 60.8
Sed0009699 Sechium edule HOM05D006774 ORTHO05D008411 5.4e-132 475.3 447 55.3
CsaV3_1G038960 Cucumis sativus L. HOM05D006774 ORTHO05D008411 1.2e-131 474.2 431 58.5
Ca_05814_v3 Cicer arietinum L. HOM05D006774 ORTHO05D008411 1.6e-131 473.8 422 59.5
Ciclev10001021m.g Citrus clementina HOM05D006774 ORTHO05D008411 2.7e-131 473.0 451 58.8
Lj1g0013332 Lotus japonicus HOM05D006774 ORTHO05D008411 4.6e-131 472.2 445 55.7
Duzib128G0809 Durio zibethinus HOM05D006774 ORTHO05D008411 6.0e-131 471.9 456 57.0
Nn1g02268 Nelumbo nucifera HOM05D006774 ORTHO05D008411 7.8e-131 471.5 359 64.6
Phvul.006G091800 Phaseolus vulgaris HOM05D006774 ORTHO05D008411 5.1e-130 468.8 390 61.5
MELO3C015322.2 Cucumis melo HOM05D006774 ORTHO05D008411 6.6e-130 468.4 427 59.5
Thhalv10023440m.g Eutrema salsugineum HOM05D006774 ORTHO05D008411 3.3e-129 466.1 483 53.4
Carub.0002s0819 Capsella rubella HOM05D006774 ORTHO05D008411 1.3e-128 464.2 495 53.5
Medtr7g113420 Medicago truncatula HOM05D006774 ORTHO05D008411 1.3e-128 464.2 431 55.9
BcaC09g49602 Brassica carinata HOM05D006774 ORTHO05D008411 2.8e-128 463.0 482 53.1
SpUn0004_0080 Schrenkiella parvula HOM05D006774 ORTHO05D008411 6.2e-128 461.8 439 56.7
SpUn0066_0030 Schrenkiella parvula HOM05D006774 ORTHO05D008411 6.2e-128 461.8 439 56.7
C01p34610 Brassica napus HOM05D006774 ORTHO05D008411 1.4e-127 460.7 482 52.9
BolC1t03432H Brassica oleracea HOM05D006774 ORTHO05D008411 1.4e-127 460.7 482 52.9
BraA01t02861Z Brassica rapa HOM05D006774 ORTHO05D008411 1.4e-127 460.7 481 52.2
A01p27210 Brassica napus HOM05D006774 ORTHO05D008411 9.0e-127 458.0 481 52.0
BcaB04g20150 Brassica carinata HOM05D006774 ORTHO05D008411 3.4e-126 456.1 441 55.8
Manes.09G167600 Manihot esculenta HOM05D006774 ORTHO05D008411 5.8e-126 455.3 418 59.3
CARHR284430 Cardamine hirsuta HOM05D006774 ORTHO05D008411 4.9e-125 452.2 437 54.9
GSVIVG01000080001 Vitis vinifera HOM05D006774 ORTHO05D008411 1.1e-124 451.1 353 68.0
AT1G54990 Arabidopsis thaliana HOM05D006774 ORTHO05D008411 2.1e-123 446.8 429 57.3
ATR0332G083 Amborella trichopoda HOM05D006774 ORTHO05D008411 2.7e-123 446.4 446 50.4
Aa31LG2G11700 Aethionema arabicum HOM05D006774 ORTHO05D008411 1.3e-120 437.6 385 58.7
Dinv40294 Davidia involucrata HOM05D006774 ORTHO05D008411 2.4e-119 433.3 271 81.2
AUR62000820 Chenopodium quinoa HOM05D006774 ORTHO05D008411 4.2e-116 422.5 400 54.2
COL.COLO4_13460 Corchorus olitorius HOM05D006774 ORTHO05D008411 7.1e-116 421.8 344 60.5
Sabra13G0023900 Salix brachista HOM05D006774 ORTHO05D008411 1.6e-112 410.6 460 49.8
ECA236G1211 Erigeron canadensis HOM05D000208 ORTHO05D000130 2.9e-109 399.8 308 64.0
Psat0s3041g0040 Pisum sativum HOM05D006774 ORTHO05D008411 1.1e-105 387.9 359 56.0
TPR.G33221 Trifolium pratense HOM05D006774 ORTHO05D008411 2.1e-104 383.6 343 58.6
Gohir.D13G110900 Gossypium hirsutum HOM05D006774 ORTHO05D008411 6.3e-104 382.1 347 59.1
CDE05G2690 Ceratophyllum demersum HOM05D006774 ORTHO05D008411 2.5e-100 370.2 428 44.2
Actinidia05698 Actinidia chinensis HOM05D006774 ORTHO05D008411 1.7e-85 320.9 182 86.3
AUR62005151 Chenopodium quinoa HOM05D006774 ORTHO05D008411 2.9e-85 320.1 272 56.6
unitig_736.g22755 Utricularia gibba HOM05D006774 ORTHO05D008411 3.0e-82 310.1 390 43.1
Pp3c11_22860 Physcomitrium patens HOM05D006774 ORTHO05D008411 1.3e-61 241.5 404 33.7
PSO478G2742 Papaver somniferum HOM05D006774 ORTHO05D008411 1.7e-61 241.1 302 46.7
Os11g0544100 Oryza sativa ssp. japonica HOM05D006774 ORTHO05D008411 1.1e-60 238.4 409 38.4
Peaxi162Scf00037g00517 Petunia axillaris HOM05D006774 ORTHO05D008411 4.7e-59 233.0 444 39.0
PSO782G1046 Papaver somniferum HOM05D006774 ORTHO05D008411 2.0e-54 217.6 293 46.1
Zm00001eb197590 Zea mays HOM05D006774 ORTHO05D008411 2.7e-54 217.2 369 37.1
Solyc01g099120.4 Solanum lycopersicum HOM05D006774 ORTHO05D008411 1.1e-44 185.3 135 66.7
Nitab4.5_0000137g0150 Nicotiana tabacum HOM05D006774 ORTHO05D008411 5.6e-44 183.0 146 61.0
Atru.chr12.689 Acer truncatum HOM05D006774 ORTHO05D008411 2.8e-43 180.6 201 53.2
Nitab4.5_0005541g0040 Nicotiana tabacum HOM05D006774 ORTHO05D008411 4.7e-43 179.9 146 61.0
SMO145G0196 Selaginella moellendorffii HOM05D006774 ORTHO05D008411 3.6e-35 153.7 382 28.8
HPP92_006104 Vanilla planifolia HOM05D006774 ORTHO05D008411 2.0e-33 147.9 177 46.9
CSS0005750 Camellia sinensis var. sinensis HOM05D006774 ORTHO05D008411 5.8e-25 119.8 81 100.0
Oeu035485.2 Olea europaea HOM05D006774 ORTHO05D001341 1.1e-18 99.0 84 58.3
vmacro23280 Vaccinium macrocarpon HOM05D006774 ORTHO05D008411 5.4e-15 86.7 88 71.6
vmacro05012 Vaccinium macrocarpon HOM05D006774 ORTHO05D008411 1.2e-14 85.5 88 70.5
RhsimUnG0226800 Rhododendron simsii HOM05D006774 ORTHO05D008411 2.7e-14 84.3 90 73.3
TAR362G0529 Trochodendron aralioides HOM05D006774 ORTHO05D008411 1.0e-13 82.4 63 60.3
Oeu051834.1 Olea europaea HOM05D006774 ORTHO05D008411 6.2e-11 73.2 84 67.9
Nitab4.5_0010934g0020 Nicotiana tabacum HOM05D006774 ORTHO05D008411 1.5e-09 68.6 62 53.2
SEGI_31760 Sequoiadendron giganteum HOM05D006774 ORTHO05D008411 4.9e-08 63.5 79 64.6
VMungo1127G0243 Vigna mungo HOM05D006774 ORTHO05D008411 4.6e-06 57.0 61 50.8


User provided reference genes

Program Settings