Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0019330 Camellia sinensis var. sinensis HOM05D000108 ORTHO05D018822 2.7e-86 322.0 171 100.0
CSS0015807 Camellia sinensis var. sinensis HOM05D000108 ORTHO05D018822 4.5e-73 278.1 171 88.9
CSS0021968 Camellia sinensis var. sinensis HOM05D000108 ORTHO05D018822 5.9e-73 277.7 171 88.3
CSS0027714 Camellia sinensis var. sinensis HOM05D000108 ORTHO05D018822 5.4e-66 254.6 168 83.3
CSS0045520 Camellia sinensis var. sinensis HOM05D000108 ORTHO05D001724 1.4e-61 240.0 158 84.8
CSS0033952 Camellia sinensis var. sinensis HOM05D000108 ORTHO05D018822 6.4e-59 231.1 168 77.4
CSS0044546 Camellia sinensis var. sinensis HOM05D000108 ORTHO05D001724 1.9e-58 229.6 158 82.3
Actinidia06738 Actinidia chinensis HOM05D000108 ORTHO05D001724 8.9e-53 210.7 158 73.4
Dinv36392 Davidia involucrata HOM05D000108 ORTHO05D001724 3.7e-51 205.3 158 70.3
Ciclev10030573m.g Citrus clementina HOM05D000108 ORTHO05D001724 1.1e-39 167.2 158 58.2
Cfa001680 Carpinus fangiana HOM05D000108 ORTHO05D001724 4.3e-39 165.2 158 58.9
CiPaw.01G268600 Carya illinoinensis HOM05D000108 ORTHO05D001724 2.2e-35 152.9 158 57.0
TWI63G0200 Tripterygium wilfordii HOM05D000108 ORTHO05D001724 1.2e-33 147.1 158 53.2
GSVIVG01016220001 Vitis vinifera HOM05D003228 ORTHO05D001724 7.8e-33 144.4 158 54.4
MD01G1103200 Malus domestica HOM05D000108 ORTHO05D001724 1.3e-32 143.7 156 54.5
MD07G1169900 Malus domestica HOM05D000108 ORTHO05D001724 3.0e-32 142.5 156 54.5
Gorai.011G236400 Gossypium raimondii HOM05D000108 ORTHO05D001724 5.1e-32 141.7 158 50.6
Gohir.D10G210800 Gossypium hirsutum HOM05D000108 ORTHO05D001724 8.7e-32 141.0 158 50.6
RcHm_v2.0_Chr1g0362591 Rosa chinensis HOM05D000108 ORTHO05D001724 3.3e-31 139.0 157 51.0
FAN03G2395 Fragaria x ananassa HOM05D000108 ORTHO05D001724 7.3e-31 137.9 158 51.3
QL08p054367 Quercus lobata HOM05D000108 ORTHO05D001724 9.6e-31 137.5 149 55.0
QL08p054496 Quercus lobata HOM05D000108 ORTHO05D001724 9.6e-31 137.5 149 55.0
FvH4_7g18790 Fragaria vesca HOM05D000108 ORTHO05D001724 3.6e-30 135.6 158 50.6
FAN06G1146 Fragaria x ananassa HOM05D000108 ORTHO05D001724 3.6e-30 135.6 158 50.6
FAN06G2234 Fragaria x ananassa HOM05D000108 ORTHO05D001724 3.6e-30 135.6 158 50.6
Cpa.g.sc53.131 Carica papaya HOM05D000108 ORTHO05D001724 6.2e-30 134.8 155 52.3
FAN10G1740 Fragaria x ananassa HOM05D000108 ORTHO05D001724 6.2e-30 134.8 158 49.4
FAN10G3052 Fragaria x ananassa HOM05D000108 ORTHO05D001724 6.2e-30 134.8 158 49.4
HanXRQChr08g0218531 Helianthus annuus HOM05D000108 ORTHO05D001724 8.1e-30 134.4 158 48.7
ECA233G5278 Erigeron canadensis HOM05D000108 ORTHO05D001724 9.0e-29 131.0 158 46.2
FAN01G0155 Fragaria x ananassa HOM05D000108 ORTHO05D001724 1.5e-28 130.2 158 50.0
Prupe.2G208800 Prunus persica HOM05D000108 ORTHO05D001724 2.6e-28 129.4 158 50.0
Cc02_g10930 Coffea canephora HOM05D000108 ORTHO05D001724 1.3e-27 127.1 161 46.0
Oeu007409.1 Olea europaea HOM05D000108 ORTHO05D001724 4.9e-27 125.2 159 47.8
CANSAT56G2924 Cannabis sativa HOM05D000108 ORTHO05D001724 8.4e-27 124.4 158 46.8
ClCG08G007710 Citrullus lanatus HOM05D000108 ORTHO05D001724 2.4e-26 122.9 179 43.0
MBI18_g01552_MAGBIO Magnolia biondii HOM05D000108 ORTHO05D001724 4.2e-26 122.1 143 51.7
PSO063G0754 Papaver somniferum HOM05D000108 ORTHO05D001724 2.7e-25 119.4 149 45.6
Manes.05G201200 Manihot esculenta HOM05D000108 ORTHO05D001724 3.5e-25 119.0 157 49.0
PSO339G0808 Papaver somniferum HOM05D000108 ORTHO05D001724 4.6e-25 118.6 149 45.0
Eucgr.J01062 Eucalyptus grandis HOM05D000108 ORTHO05D001724 1.3e-24 117.1 149 45.6
MELO3C019823.2 Cucumis melo HOM05D000108 ORTHO05D001724 1.1e-23 114.0 158 44.9
Potri.010G227000 Populus trichocarpa HOM05D000108 ORTHO05D001724 1.9e-23 113.2 144 47.9
CAN.G321.63 Capsicum annuum HOM05D000108 ORTHO05D001724 3.3e-23 112.5 200 39.0
Solyc11g008350.2 Solanum lycopersicum HOM05D000108 ORTHO05D001724 1.6e-22 110.2 157 43.9
CsaV3_6G036700 Cucumis sativus L. HOM05D000108 ORTHO05D001724 6.2e-22 108.2 157 43.3
TAR636G1445 Trochodendron aralioides HOM05D000108 ORTHO05D001724 6.2e-22 108.2 107 57.0
Lj2A20G44 Lonicera japonica HOM05D000108 ORTHO05D001724 1.1e-21 107.5 141 44.7
Gohir.A10G202600 Gossypium hirsutum HOM05D000108 ORTHO05D001724 1.2e-20 104.0 191 39.3
MSTRG.9150 Avicennia marina HOM05D000108 ORTHO05D001724 1.5e-20 103.6 228 34.6
Sed0027974 Sechium edule HOM05D000108 ORTHO05D001724 1.5e-20 103.6 158 40.5
Sopen11g004160 Solanum pennellii HOM05D000108 ORTHO05D001724 7.6e-20 101.3 158 42.4
Peaxi162Scf00145g01216 Petunia axillaris HOM05D000108 ORTHO05D001724 1.0e-19 100.9 158 42.4
Aqoxy1G01143 Aquilegia oxysepala HOM05D000108 ORTHO05D001724 1.4e-18 97.1 98 53.1
CARHR164850 Cardamine hirsuta HOM05D000108 ORTHO05D001724 1.4e-18 97.1 162 39.5
Duzib114G0930 Durio zibethinus HOM05D000108 ORTHO05D001724 2.5e-18 96.3 98 53.1
COL.COLO4_33386 Corchorus olitorius HOM05D000108 ORTHO05D001724 4.2e-18 95.5 98 54.1
Haze_16873 Corylus avellana HOM05D000108 ORTHO05D001724 7.1e-18 94.7 73 65.8
AT3G54870 Arabidopsis thaliana HOM05D000108 ORTHO05D001724 2.1e-17 93.2 162 37.7
Thhalv10010108m.g Eutrema salsugineum HOM05D000108 ORTHO05D001724 4.6e-17 92.0 153 39.9
BcaB01g00151 Brassica carinata HOM05D000108 ORTHO05D001724 7.9e-17 91.3 166 38.0
A09p47810 Brassica napus HOM05D000108 ORTHO05D001724 1.3e-16 90.5 153 39.9
BraA09t40238Z Brassica rapa HOM05D000108 ORTHO05D001724 1.3e-16 90.5 153 39.9
BcaC07g39771 Brassica carinata HOM05D000108 ORTHO05D001724 1.8e-16 90.1 153 39.2
BolC8t50615H Brassica oleracea HOM05D000108 ORTHO05D001724 1.8e-16 90.1 153 39.2
Sp5g07550 Schrenkiella parvula HOM05D000108 ORTHO05D001724 1.8e-16 90.1 166 38.6
C08p30060 Brassica napus HOM05D000108 ORTHO05D001724 5.1e-16 88.6 153 38.6
Thecc.10G083400 Theobroma cacao HOM05D000108 ORTHO05D001724 6.7e-16 88.2 85 55.3
ATR1126G033 Amborella trichopoda HOM05D000108 ORTHO05D001724 8.7e-16 87.8 165 36.4
Rhsim03G0115900 Rhododendron simsii HOM05D000108 ORTHO05D001724 8.7e-16 87.8 158 41.1
AL5G35980 Arabidopsis lyrata HOM05D000108 ORTHO05D001724 1.9e-15 86.7 162 37.0
Nitab4.5_0001450g0060 Nicotiana tabacum HOM05D000108 ORTHO05D001724 4.3e-15 85.5 140 40.7
Gohir.A05G411200 Gossypium hirsutum HOM05D000108 ORTHO05D001724 5.7e-15 85.1 158 39.2
Nitab4.5_0001659g0160 Nicotiana tabacum HOM05D000108 ORTHO05D001724 1.6e-14 83.6 140 40.0
Aa31sc43G100 Aethionema arabicum HOM05D000108 ORTHO05D001724 2.4e-13 79.7 162 36.4
Sc06g0001660 Simmondsia chinensis HOM05D000108 ORTHO05D001724 5.3e-13 78.6 203 30.0
Gohir.D04G004800 Gossypium hirsutum HOM05D000108 ORTHO05D001724 2.0e-12 76.6 158 35.4
Sabra10G0175100 Salix brachista HOM05D000108 ORTHO05D001724 3.4e-12 75.9 123 43.9
Gorai.012G006000 Gossypium raimondii HOM05D000108 ORTHO05D001724 4.5e-12 75.5 158 34.8
DCAR_006416 Daucus carota HOM05D000108 ORTHO05D001724 7.6e-12 74.7 100 47.0
THA.LOC104825220 Tarenaya hassleriana HOM05D000108 ORTHO05D001724 7.6e-12 74.7 130 36.9
Haze_16855 Corylus avellana HOM05D000108 ORTHO05D001724 2.2e-11 73.2 109 43.1
Lsat_1_v5_gn_8_20800 Lactuca sativa HOM05D000108 ORTHO05D001724 2.9e-11 72.8 88 48.9
SGA_v2.0_scaffold62G21388 Striga asiatica HOM05D000108 ORTHO05D001724 1.1e-10 70.9 86 48.8
Lj2A20T48 Lonicera japonica HOM05D010180 ORTHO05D018822 1.9e-10 70.1 70 51.4
TAR636G0116 Trochodendron aralioides HOM05D000108 ORTHO05D001724 4.3e-07 58.9 63 52.4
PGR044G1521 Punica granatum HOM05D000108 ORTHO05D001724 7.4e-07 58.2 158 31.0
AUR62038481 Chenopodium quinoa HOM05D000108 ORTHO05D001724 2.2e-06 56.6 206 25.7
Ah.02g127990 Amaranthus hybridus HOM05D000108 ORTHO05D001724 3.7e-06 55.8 137 28.5
Migut.F01956 Erythranthe guttata HOM05D000108 ORTHO05D001724 3.7e-06 55.8 126 31.7
AUR62014259 Chenopodium quinoa HOM05D000108 ORTHO05D001724 4.8e-06 55.5 206 25.2


User provided reference genes

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