Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0019310 Camellia sinensis var. sinensis HOM05D001886 ORTHO05D005666 5.2e-227 790.8 424 100.0
CSS0014030 Camellia sinensis var. sinensis HOM05D001886 ORTHO05D005666 3.1e-224 781.6 434 97.5
CSS0002297 Camellia sinensis var. sinensis HOM05D001886 ORTHO05D005666 3.5e-183 645.2 432 80.3
Cfa017420 Carpinus fangiana HOM05D001886 ORTHO05D005666 4.7e-180 634.8 433 79.0
Haze_20750 Corylus avellana HOM05D001886 ORTHO05D005666 8.4e-177 624.0 448 76.1
QL05p010709 Quercus lobata HOM05D001886 ORTHO05D005666 8.4e-177 624.0 433 77.4
QL07p047480 Quercus lobata HOM05D001886 ORTHO05D005666 8.4e-177 624.0 433 77.6
TAR633G2154 Trochodendron aralioides HOM05D001886 ORTHO05D005666 3.3e-173 612.1 428 77.8
Rhsim04G0155900 Rhododendron simsii HOM05D001886 ORTHO05D005666 1.6e-172 609.8 462 73.4
Hma1.2p1_1481F.1_g286150 Hydrangea macrophylla HOM05D001886 ORTHO05D005666 6.2e-172 607.8 430 74.9
CiPaw.09G189500 Carya illinoinensis HOM05D001886 ORTHO05D005666 8.1e-172 607.4 429 76.7
GSVIVG01025523001 Vitis vinifera HOM05D001886 ORTHO05D005666 8.1e-172 607.4 429 75.8
Manes.09G087100 Manihot esculenta HOM05D001886 ORTHO05D005666 5.8e-170 601.3 428 74.8
Potri.006G083700 Populus trichocarpa HOM05D001886 ORTHO05D005666 9.9e-170 600.5 431 74.0
Ciclev10011745m.g Citrus clementina HOM05D001886 ORTHO05D005666 6.0e-167 591.3 428 74.1
MD04G1123400 Malus domestica HOM05D001886 ORTHO05D005666 6.0e-167 591.3 428 73.8
Sabra06G0063300 Salix brachista HOM05D001886 ORTHO05D005666 6.7e-166 587.8 431 72.2
DCAR_009246 Daucus carota HOM05D001886 ORTHO05D005666 3.3e-165 585.5 430 73.5
RcHm_v2.0_Chr3g0467171 Rosa chinensis HOM05D001886 ORTHO05D005666 8.1e-164 580.9 429 74.4
TWI74G1177 Tripterygium wilfordii HOM05D001886 ORTHO05D005666 8.1e-164 580.9 433 72.3
Aqoxy2G02037 Aquilegia oxysepala HOM05D001886 ORTHO05D005666 1.4e-163 580.1 416 74.0
Thecc.05G043700 Theobroma cacao HOM05D001886 ORTHO05D005666 6.9e-163 577.8 429 71.8
CANSAT35G0217 Cannabis sativa HOM05D001886 ORTHO05D005666 1.2e-162 577.0 432 72.0
Prupe.6G251100 Prunus persica HOM05D001886 ORTHO05D005666 1.2e-162 577.0 427 73.5
MD12G1139300 Malus domestica HOM05D001886 ORTHO05D005666 1.7e-161 573.2 433 70.9
Duzib093G1847 Durio zibethinus HOM05D001886 ORTHO05D005666 3.2e-160 568.9 429 71.3
FvH4_6g14211 Fragaria vesca HOM05D001886 ORTHO05D005666 4.2e-160 568.5 432 72.7
FAN05G4892 Fragaria x ananassa HOM05D001886 ORTHO05D005666 4.2e-160 568.5 431 72.9
Migut.J00351 Erythranthe guttata HOM05D001886 ORTHO05D005666 1.0e-158 563.9 428 71.0
Hma1.2p1_1707F.1_g298500 Hydrangea macrophylla HOM05D001886 ORTHO05D005666 5.1e-158 561.6 464 67.7
Gorai.006G174800 Gossypium raimondii HOM05D001886 ORTHO05D005666 6.7e-158 561.2 428 70.8
Hma1.2p1_1065F.1_g253710 Hydrangea macrophylla HOM05D001886 ORTHO05D005666 6.7e-158 561.2 428 72.9
Gohir.D09G153300 Gossypium hirsutum HOM05D001886 ORTHO05D005666 1.5e-157 560.1 428 70.6
Gohir.A09G158000 Gossypium hirsutum HOM05D001886 ORTHO05D005666 2.5e-157 559.3 428 69.9
SalBow3G2787 Salvia bowleyana HOM05D001886 ORTHO05D005666 5.6e-157 558.1 429 70.9
MSTRG.5681 Avicennia marina HOM05D001886 ORTHO05D005666 7.4e-157 557.8 427 69.6
Dinv35628 Davidia involucrata HOM05D001886 ORTHO05D005666 2.1e-156 556.2 427 73.8
Atru.chr8.1947 Acer truncatum HOM05D001886 ORTHO05D005666 3.7e-156 555.4 429 69.2
Lsat_1_v5_gn_2_111601 Lactuca sativa HOM05D001886 ORTHO05D005666 1.1e-155 553.9 429 71.6
COL.COLO4_14849 Corchorus olitorius HOM05D001886 ORTHO05D005666 6.9e-155 551.2 429 69.5
Eucgr.K03155 Eucalyptus grandis HOM05D001886 ORTHO05D005666 1.5e-154 550.1 437 69.6
ECA238G4795 Erigeron canadensis HOM05D001886 ORTHO05D005666 3.4e-154 548.9 429 70.6
Carub.0003s0857 Capsella rubella HOM05D001886 ORTHO05D005666 1.3e-153 547.0 429 69.7
MBI14_g24315_MAGBIO Magnolia biondii HOM05D001886 ORTHO05D005666 1.3e-153 547.0 426 69.7
Sc20g0004960 Simmondsia chinensis HOM05D001886 ORTHO05D005666 1.3e-153 547.0 426 68.5
Oeu036166.1 Olea europaea HOM05D001886 ORTHO05D005666 1.7e-153 546.6 423 69.3
HanXRQChr07g0196201 Helianthus annuus HOM05D001886 ORTHO05D005666 2.2e-153 546.2 430 69.1
AL3G20650 Arabidopsis lyrata HOM05D001886 ORTHO05D005666 3.8e-153 545.4 431 69.8
PGSC0003DMG400008924 Solanum tuberosum HOM05D001886 ORTHO05D005666 3.8e-153 545.4 430 68.1
CAN.G97.10 Capsicum annuum HOM05D001886 ORTHO05D005666 4.9e-153 545.0 431 68.4
MELO3C009272.2 Cucumis melo HOM05D001886 ORTHO05D005666 6.5e-153 544.7 410 71.2
CsaV3_3G035030 Cucumis sativus L. HOM05D001886 ORTHO05D005666 6.5e-153 544.7 429 69.0
Lj2A99T56 Lonicera japonica HOM05D001886 ORTHO05D005666 6.5e-153 544.7 372 78.0
Solyc09g010470.3 Solanum lycopersicum HOM05D001886 ORTHO05D005666 1.9e-152 543.1 430 67.9
Thhalv10020764m.g Eutrema salsugineum HOM05D001886 ORTHO05D005666 4.2e-152 542.0 429 69.5
AT3G09470 Arabidopsis thaliana HOM05D001886 ORTHO05D005666 7.1e-152 541.2 431 68.9
Sopen09g005210 Solanum pennellii HOM05D001886 ORTHO05D005666 1.2e-151 540.4 430 67.4
PGR004G0312 Punica granatum HOM05D001886 ORTHO05D005666 4.6e-151 538.5 433 69.1
ClCG10G020980 Citrullus lanatus HOM05D001886 ORTHO05D005666 6.0e-151 538.1 429 69.2
ClCG00G003200 Citrullus lanatus HOM05D001886 ORTHO05D005666 7.9e-151 537.7 429 69.0
ATR0559G352 Amborella trichopoda HOM05D001886 ORTHO05D005666 1.3e-150 537.0 408 69.1
C05p58560 Brassica napus HOM05D001886 ORTHO05D005666 1.3e-150 537.0 432 68.1
Oeu036169.1 Olea europaea HOM05D001886 ORTHO05D005666 1.3e-150 537.0 429 67.1
BolC5t34506H Brassica oleracea HOM05D001886 ORTHO05D005666 1.8e-150 536.6 432 68.1
PSO339G5853 Papaver somniferum HOM05D001886 ORTHO05D005666 2.3e-150 536.2 432 67.4
Sed0005778 Sechium edule HOM05D001886 ORTHO05D005666 8.7e-150 534.3 407 70.3
PGR004G0538 Punica granatum HOM05D001886 ORTHO05D005666 1.1e-149 533.9 432 68.8
Sp3g07840 Schrenkiella parvula HOM05D001886 ORTHO05D005666 1.5e-149 533.5 429 68.3
Prupe.6G251000 Prunus persica HOM05D001886 ORTHO05D005666 1.9e-149 533.1 430 68.4
BraA05t22734Z Brassica rapa HOM05D001886 ORTHO05D005666 3.3e-149 532.3 432 67.8
PSO339G4978 Papaver somniferum HOM05D001886 ORTHO05D005666 4.3e-149 531.9 421 67.9
PSO339G5613 Papaver somniferum HOM05D001886 ORTHO05D005666 4.3e-149 531.9 421 67.9
A05p39530 Brassica napus HOM05D001886 ORTHO05D005666 5.7e-149 531.6 432 67.8
Aa31LG3G1960 Aethionema arabicum HOM05D001886 ORTHO05D005666 7.4e-149 531.2 429 67.8
THA.LOC104823252 Tarenaya hassleriana HOM05D001886 ORTHO05D005666 1.6e-148 530.0 430 68.1
AUR62041035 Chenopodium quinoa HOM05D001886 ORTHO05D005666 3.7e-148 528.9 429 66.9
Medtr7g099890 Medicago truncatula HOM05D001886 ORTHO05D005666 8.2e-148 527.7 433 67.0
Ca_08782_v3 Cicer arietinum L. HOM05D001886 ORTHO05D005666 1.1e-147 527.3 436 67.0
TPR.G21472 Trifolium pratense HOM05D002608 ORTHO05D005666 1.1e-147 527.3 415 68.4
Lalb_Chr01g0019241 Lupinus albus HOM05D001886 ORTHO05D005666 1.4e-147 526.9 436 66.1
Actinidia05302 Actinidia chinensis HOM05D001886 ORTHO05D005666 9.0e-147 524.2 433 68.4
FAN09G1438 Fragaria x ananassa HOM05D001886 ORTHO05D005666 1.2e-146 523.9 514 60.5
MD04G1123300 Malus domestica HOM05D001886 ORTHO05D005666 2.0e-146 523.1 427 67.7
arahy.Tifrunner.gnm1.ann1.LM62V2 Arachis hypogaea HOM05D001886 ORTHO05D005666 3.4e-146 522.3 435 66.2
PSO648G0053 Papaver somniferum HOM05D001886 ORTHO05D005666 7.6e-146 521.2 421 66.7
BcaC05g29675 Brassica carinata HOM05D001886 ORTHO05D005666 1.0e-145 520.8 431 67.3
Oeu060049.1 Olea europaea HOM05D001886 ORTHO05D005666 6.5e-145 518.1 418 70.3
Hund10629 Selenicereus undatus HOM05D001886 ORTHO05D005666 6.5e-145 518.1 426 66.0
Lj1g0000746 Lotus japonicus HOM05D001886 ORTHO05D005666 5.5e-144 515.0 434 65.7
Medtr7g099910 Medicago truncatula HOM05D001886 ORTHO05D005666 5.5e-144 515.0 436 65.4
THA.LOC104816289 Tarenaya hassleriana HOM05D001886 ORTHO05D005666 7.2e-144 514.6 412 66.7
RcHm_v2.0_Chr3g0467181 Rosa chinensis HOM05D001886 ORTHO05D005666 9.4e-144 514.2 431 66.4
FAN14G0919 Fragaria x ananassa HOM05D001886 ORTHO05D005666 8.8e-142 507.7 432 65.5
FAN09G0883 Fragaria x ananassa HOM05D002354 ORTHO05D005666 1.1e-141 507.3 434 65.2
Cc06_g02890 Coffea canephora HOM05D001886 ORTHO05D005666 1.5e-141 506.9 435 64.6
FvH4_6g14220 Fragaria vesca HOM05D001886 ORTHO05D005666 1.9e-141 506.5 432 65.5
Glyma.19G173000 Glycine max HOM05D001886 ORTHO05D005666 1.9e-141 506.5 434 64.1
Ah.12g062350 Amaranthus hybridus HOM05D001886 ORTHO05D005666 2.5e-141 506.1 430 63.3
Nitab4.5_0002077g0040 Nicotiana tabacum HOM05D001886 ORTHO05D005666 2.5e-141 506.1 429 64.8
VMungo1383G3275 Vigna mungo HOM05D001886 ORTHO05D005666 5.7e-141 505.0 435 64.1
vmacro08662 Vaccinium macrocarpon HOM05D001886 ORTHO05D005666 2.8e-140 502.7 512 59.8
Glyma.03G172100 Glycine max HOM05D001886 ORTHO05D005666 3.7e-140 502.3 435 63.2
Phvul.001G169800 Phaseolus vulgaris HOM05D001886 ORTHO05D005666 3.7e-140 502.3 428 65.0
Lj1g0014450 Lotus japonicus HOM05D001886 ORTHO05D005666 1.1e-139 500.7 436 63.1
Sed0018380 Sechium edule HOM05D001886 ORTHO05D005666 1.1e-139 500.7 367 71.1
Nn2g10428 Nelumbo nucifera HOM05D001886 ORTHO05D005666 3.1e-139 499.2 428 65.9
Lj1g0019565 Lotus japonicus HOM05D001886 ORTHO05D005666 5.9e-138 495.0 414 65.0
Psat3g049200 Pisum sativum HOM05D001886 ORTHO05D005666 5.0e-137 491.9 413 66.8
Medtr7g099870 Medicago truncatula HOM05D001886 ORTHO05D005666 8.5e-137 491.1 415 64.8
CSS0035971 Camellia sinensis var. sinensis HOM05D001886 ORTHO05D005666 1.1e-136 490.7 433 67.4
arahy.Tifrunner.gnm1.ann1.QN2KEZ Arachis hypogaea HOM05D001886 ORTHO05D005666 3.0e-134 482.6 435 63.0
FAN09G1880 Fragaria x ananassa HOM05D001886 ORTHO05D005666 4.4e-133 478.8 435 63.4
unitig_578.g15699 Utricularia gibba HOM05D001886 ORTHO05D005666 9.7e-133 477.6 433 61.0
Os12g0566900 Oryza sativa ssp. japonica HOM05D001886 ORTHO05D005666 2.8e-132 476.1 406 63.8
Lalb_Chr20g0113251 Lupinus albus HOM05D001886 ORTHO05D005666 1.0e-129 467.6 436 60.1
Zm00001eb028780 Zea mays HOM05D001886 ORTHO05D005666 7.2e-128 461.5 425 60.2
CDE07G1313 Ceratophyllum demersum HOM05D001886 ORTHO05D005666 6.1e-127 458.4 418 60.8
Dinv37200 Davidia involucrata HOM05D001886 ORTHO05D005666 1.1e-125 454.1 313 78.6
Peaxi162Scf00039g01233 Petunia axillaris HOM05D001886 ORTHO05D005666 3.7e-124 449.1 386 63.7
HPP92_018059 Vanilla planifolia HOM05D001886 ORTHO05D005666 5.9e-122 441.8 436 59.9
AUR62041759 Chenopodium quinoa HOM05D001886 ORTHO05D005666 3.6e-119 432.6 429 58.7
Lj2A2G29 Lonicera japonica HOM05D001886 ORTHO05D005666 2.3e-110 403.3 379 64.1
Nitab4.5_0003267g0040 Nicotiana tabacum HOM05D001886 ORTHO05D005666 2.4e-107 393.3 419 55.6
SGA_v2.0_scaffold126G33811 Striga asiatica HOM05D001886 ORTHO05D005666 3.0e-102 376.3 432 53.0
EL10As1g23100 Beta vulgaris HOM05D001886 ORTHO05D005666 4.0e-102 375.9 294 68.4
TPR.G21468 Trifolium pratense HOM05D001886 ORTHO05D005666 1.2e-101 374.4 344 60.2
Psat3g049040 Pisum sativum HOM05D001886 ORTHO05D005666 1.4e-99 367.5 300 68.7
Mapoly0179s0003 Marchantia polymorpha HOM05D001886 ORTHO05D005666 7.8e-98 361.7 405 48.6
Pp3c8_1230 Physcomitrium patens HOM05D001886 ORTHO05D005666 3.1e-94 349.7 409 47.9
SEGI_05360 Sequoiadendron giganteum HOM05D001886 ORTHO05D005666 5.4e-91 339.0 282 63.8
Actinidia13133 Actinidia chinensis HOM05D001886 ORTHO05D005666 3.4e-85 319.7 182 87.4
Actinidia13134 Actinidia chinensis HOM05D001886 ORTHO05D005666 1.5e-80 304.3 205 80.5
CARHR083880 Cardamine hirsuta HOM05D001886 ORTHO05D005666 2.2e-76 290.4 248 64.9
Migut.O00944 Erythranthe guttata HOM05D001886 ORTHO05D005666 3.0e-73 280.0 321 52.6
Gohir.D04G119800 Gossypium hirsutum HOM05D001886 ORTHO05D005666 2.1e-71 273.9 419 44.2
CARHR083890 Cardamine hirsuta HOM05D001886 ORTHO05D005666 5.1e-65 252.7 179 76.0
HPP92_018052 Vanilla planifolia HOM05D001886 ORTHO05D005666 1.2e-61 241.5 188 67.0
Os12g0566800 Oryza sativa ssp. japonica HOM05D001886 ORTHO05D005666 5.8e-61 239.2 178 68.0
CSS0044683 Camellia sinensis var. sinensis HOM05D001886 ORTHO05D005666 8.4e-60 235.3 160 80.0
ATR0559G335 Amborella trichopoda HOM05D001886 ORTHO05D005666 5.1e-57 226.1 172 68.6
CSS0017297 Camellia sinensis var. sinensis HOM05D001886 ORTHO05D005666 1.1e-51 208.4 147 78.9
AagrBONN_evm.TU.Sc2ySwM_362.1966 Anthoceros agrestis HOM05D001886 ORTHO05D005666 7.6e-45 185.7 139 62.6
MD12G1139200 Malus domestica HOM05D001886 ORTHO05D005666 2.0e-37 161.0 236 46.2
Psat3g053880 Pisum sativum HOM05D000335 ORTHO05D005666 5.8e-37 159.5 120 71.7
BcaC05g29677 Brassica carinata HOM05D001886 ORTHO05D005666 1.4e-30 138.3 112 69.6
MD12G1139100 Malus domestica HOM05D001886 ORTHO05D005666 3.2e-27 127.1 93 73.1
Os12g0567000 Oryza sativa ssp. japonica HOM05D001886 ORTHO05D005666 1.8e-25 121.3 98 62.2
AagrBONN_evm.TU.Sc2ySwM_362.1965 Anthoceros agrestis HOM05D001886 ORTHO05D005666 1.8e-22 111.3 113 50.4
FAN11G3241 Fragaria x ananassa HOM05D001164 ORTHO05D001031 4.5e-21 106.7 80 67.5
FAN02G0854 Fragaria x ananassa HOM05D001886 ORTHO05D005666 8.5e-20 102.4 123 52.8
TAR636G1555 Trochodendron aralioides HOM05D001886 ORTHO05D005666 7.2e-19 99.4 316 31.0
Mapoly0174s0006 Marchantia polymorpha HOM05D001886 ORTHO05D005666 2.7e-10 70.9 367 25.6
SMO197G0098 Selaginella moellendorffii HOM05D001886 ORTHO05D005666 5.2e-09 66.6 399 23.6
FAN05G0933 Fragaria x ananassa HOM05D001164 ORTHO05D001031 6.3e-07 59.7 39 71.8
TAR629G1812 Trochodendron aralioides HOM05D004143 ORTHO05D004816 4.1e-06 57.0 193 31.1


User provided reference genes

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