Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0019299 Camellia sinensis var. sinensis HOM05D004722 ORTHO05D005453 3.4e-44 181.4 99 100.0
CSS0017159 Camellia sinensis var. sinensis HOM05D004722 ORTHO05D005453 3.1e-42 174.9 99 96.0
CSS0018564 Camellia sinensis var. sinensis HOM05D004722 ORTHO05D005453 3.8e-40 167.9 100 94.0
PGR102G1407 Punica granatum HOM05D004722 ORTHO05D005453 1.7e-19 99.4 73 69.9
Sabra09G0015700 Salix brachista HOM05D004722 ORTHO05D005453 1.4e-18 96.3 94 59.6
Phvul.005G042200 Phaseolus vulgaris HOM05D004722 ORTHO05D005453 2.4e-18 95.5 75 68.0
Rhsim07G0049700 Rhododendron simsii HOM05D004722 ORTHO05D005453 5.4e-18 94.4 72 72.2
Potri.009G024300 Populus trichocarpa HOM05D004722 ORTHO05D005453 2.7e-17 92.0 93 57.0
TWI60G0560 Tripterygium wilfordii HOM05D004722 ORTHO05D005453 2.7e-17 92.0 74 70.3
Medtr2g061780 Medicago truncatula HOM05D004722 ORTHO05D005453 3.5e-17 91.7 75 68.0
Prupe.2G002500 Prunus persica HOM05D004722 ORTHO05D005453 7.8e-17 90.5 88 62.5
Sed0000285 Sechium edule HOM05D004722 ORTHO05D005453 7.8e-17 90.5 71 66.2
MD02G1319500 Malus domestica HOM05D004722 ORTHO05D005453 1.0e-16 90.1 94 58.5
CiPaw.13G035000 Carya illinoinensis HOM05D004722 ORTHO05D005453 1.3e-16 89.7 82 62.2
Glyma.15G268200 Glycine max HOM05D004722 ORTHO05D005453 1.3e-16 89.7 75 66.7
Potri.001G230900 Populus trichocarpa HOM05D004722 ORTHO05D005453 1.3e-16 89.7 94 58.5
TPR.G16145 Trifolium pratense HOM05D004722 ORTHO05D005453 1.3e-16 89.7 75 68.0
arahy.Tifrunner.gnm1.ann1.3B9L35 Arachis hypogaea HOM05D004722 ORTHO05D005453 2.3e-16 89.0 75 68.0
TAR633G0462 Trochodendron aralioides HOM05D004722 ORTHO05D005453 2.3e-16 89.0 88 60.2
ClCG10G012700 Citrullus lanatus HOM05D004722 ORTHO05D005453 3.0e-16 88.6 78 62.8
Aqoxy2G00098 Aquilegia oxysepala HOM05D004722 ORTHO05D005453 6.6e-16 87.4 93 53.8
Aqoxy3G01856 Aquilegia oxysepala HOM05D004722 ORTHO05D005453 6.6e-16 87.4 93 53.8
Sabra16G0138300 Salix brachista HOM05D004722 ORTHO05D005453 6.6e-16 87.4 87 60.9
vmacro13608 Vaccinium macrocarpon HOM05D004722 ORTHO05D005453 6.6e-16 87.4 95 58.9
Atru.chr11.2706 Acer truncatum HOM05D004722 ORTHO05D005453 8.6e-16 87.0 79 67.1
Manes.10G152300 Manihot esculenta HOM05D004722 ORTHO05D005453 8.6e-16 87.0 74 67.6
Lalb_Chr25g0283671 Lupinus albus HOM05D004722 ORTHO05D005453 1.5e-15 86.3 89 56.2
RhsimUnG0154700 Rhododendron simsii HOM05D004722 ORTHO05D005453 2.5e-15 85.5 74 64.9
Sp4g14310 Schrenkiella parvula HOM05D004722 ORTHO05D005453 2.5e-15 85.5 72 69.4
Sed0020970 Sechium edule HOM05D004722 ORTHO05D005453 2.5e-15 85.5 78 61.5
PGSC0003DMG400028988 Solanum tuberosum HOM05D004722 ORTHO05D005453 2.5e-15 85.5 71 71.8
Ca_03203_v3 Cicer arietinum L. HOM05D004722 ORTHO05D005453 3.3e-15 85.1 75 65.3
Lsat_1_v5_gn_1_68380 Lactuca sativa HOM05D004722 ORTHO05D005453 3.3e-15 85.1 76 61.8
Rhsim13G0228000 Rhododendron simsii HOM05D004722 ORTHO05D005453 3.3e-15 85.1 74 64.9
Actinidia05843 Actinidia chinensis HOM05D004722 ORTHO05D005453 5.6e-15 84.3 85 61.2
Glyma.08G158100 Glycine max HOM05D004722 ORTHO05D005453 5.6e-15 84.3 72 66.7
HanXRQChr11g0344951 Helianthus annuus HOM05D004722 ORTHO05D005453 5.6e-15 84.3 83 59.0
Ciclev10033110m.g Citrus clementina HOM05D004722 ORTHO05D005453 7.3e-15 84.0 87 60.9
COL.COLO4_10444 Corchorus olitorius HOM05D004722 ORTHO05D005453 7.3e-15 84.0 81 58.0
DCAR_029591 Daucus carota HOM05D004722 ORTHO05D005453 9.5e-15 83.6 88 55.7
Nn2g15722 Nelumbo nucifera HOM05D004722 ORTHO05D005453 9.5e-15 83.6 70 71.4
Thecc.09G215900 Theobroma cacao HOM05D004722 ORTHO05D005453 9.5e-15 83.6 96 56.2
Cc02_g26920 Coffea canephora HOM05D004722 ORTHO05D005453 1.2e-14 83.2 71 64.8
ECA236G3701 Erigeron canadensis HOM05D004722 ORTHO05D005453 1.2e-14 83.2 67 70.1
Eucgr.B03635 Eucalyptus grandis HOM05D004722 ORTHO05D005453 1.2e-14 83.2 78 57.7
Psat1g129080 Pisum sativum HOM05D004722 ORTHO05D005453 1.2e-14 83.2 71 67.6
Cc02_g26900 Coffea canephora HOM05D004722 ORTHO05D005453 1.6e-14 82.8 71 64.8
CAN.G129.50 Capsicum annuum HOM05D004722 ORTHO05D005453 2.1e-14 82.4 64 73.4
Lj3g0007026 Lotus japonicus HOM05D004722 ORTHO05D005453 2.1e-14 82.4 84 60.7
RcHm_v2.0_Chr1g0313231 Rosa chinensis HOM05D004722 ORTHO05D005453 2.1e-14 82.4 81 66.7
CSS0019909 Camellia sinensis var. sinensis HOM05D004722 ORTHO05D005453 2.8e-14 82.0 74 59.5
Duzib114G0602 Durio zibethinus HOM05D004722 ORTHO05D005453 2.8e-14 82.0 71 64.8
Hma1.2p1_1373F.1_g278710 Hydrangea macrophylla HOM05D004722 ORTHO05D005453 2.8e-14 82.0 77 63.6
Hma1.2p1_2663F.1_g326415 Hydrangea macrophylla HOM05D004722 ORTHO05D005453 2.8e-14 82.0 77 63.6
MD00G1055400 Malus domestica HOM05D004722 ORTHO05D005453 2.8e-14 82.0 89 57.3
FAN01G1424 Fragaria x ananassa HOM05D000082 ORTHO05D005453 3.6e-14 81.6 95 58.9
TAR636G1609 Trochodendron aralioides HOM05D004722 ORTHO05D005453 3.6e-14 81.6 70 65.7
Cpa.g.sc189.2 Carica papaya HOM05D004722 ORTHO05D005453 4.7e-14 81.3 70 62.9
Cfa010708 Carpinus fangiana HOM05D004722 ORTHO05D005453 4.7e-14 81.3 78 62.8
Hma1.2p1_0541F.1_g174840 Hydrangea macrophylla HOM05D004722 ORTHO05D005453 4.7e-14 81.3 96 58.3
MELO3C023928.2 Cucumis melo HOM05D004722 ORTHO05D005453 6.2e-14 80.9 70 61.4
Aa31LG1G19080 Aethionema arabicum HOM05D004722 ORTHO05D005453 8.1e-14 80.5 77 61.0
CANSAT11G0834 Cannabis sativa HOM05D004722 ORTHO05D005453 8.1e-14 80.5 67 62.7
Migut.N01655 Erythranthe guttata HOM05D004722 ORTHO05D005453 8.1e-14 80.5 82 63.4
Peaxi162Scf00245g00096 Petunia axillaris HOM05D004722 ORTHO05D005453 1.1e-13 80.1 82 61.0
TAR636G0988 Trochodendron aralioides HOM05D004722 ORTHO05D005453 1.1e-13 80.1 70 64.3
COL.COLO4_35454 Corchorus olitorius HOM05D004722 ORTHO05D005453 1.4e-13 79.7 77 62.3
Haze_03270 Corylus avellana HOM05D004722 ORTHO05D005453 1.4e-13 79.7 95 54.7
SalBow4G0755 Salvia bowleyana HOM05D004722 ORTHO05D005453 1.4e-13 79.7 71 66.2
Sopen01g033320 Solanum pennellii HOM05D004722 ORTHO05D005453 1.4e-13 79.7 71 66.2
BcaC02g11308 Brassica carinata HOM05D004722 ORTHO05D005453 1.8e-13 79.3 90 55.6
A05p13590 Brassica napus HOM05D004722 ORTHO05D005453 1.8e-13 79.3 90 55.6
C04p17690 Brassica napus HOM05D004722 ORTHO05D005453 1.8e-13 79.3 90 55.6
BolC4t23317H Brassica oleracea HOM05D004722 ORTHO05D005453 1.8e-13 79.3 90 55.6
BraA05t20296Z Brassica rapa HOM05D004722 ORTHO05D005453 1.8e-13 79.3 90 55.6
CARHR005060 Cardamine hirsuta HOM05D004722 ORTHO05D005453 1.8e-13 79.3 89 51.7
HanXRQChr15g0480671 Helianthus annuus HOM05D004722 ORTHO05D005453 1.8e-13 79.3 75 61.3
Nitab4.5_0000468g0090 Nicotiana tabacum HOM05D004722 ORTHO05D005453 1.8e-13 79.3 64 70.3
PSO339G1234 Papaver somniferum HOM05D004722 ORTHO05D005453 1.8e-13 79.3 86 59.3
Solyc01g073720.2 Solanum lycopersicum HOM05D004722 ORTHO05D005453 1.8e-13 79.3 64 71.9
Sopen01g033290 Solanum pennellii HOM05D004722 ORTHO05D005453 2.3e-13 79.0 64 70.3
PGSC0003DMG400028984 Solanum tuberosum HOM05D004722 ORTHO05D005453 2.3e-13 79.0 64 70.3
Thecc.10G172000 Theobroma cacao HOM05D004722 ORTHO05D005453 2.3e-13 79.0 78 62.8
AT1G05575 Arabidopsis thaliana HOM05D004722 ORTHO05D005453 3.1e-13 78.6 76 57.9
GSVIVG01025254001 Vitis vinifera HOM05D004722 ORTHO05D005453 4.0e-13 78.2 79 58.2
CSS0030536 Camellia sinensis var. sinensis HOM05D004722 ORTHO05D005453 5.2e-13 77.8 71 62.0
Thhalv10017532m.g Eutrema salsugineum HOM05D004722 ORTHO05D005453 5.2e-13 77.8 91 53.8
Potri.001G010600 Populus trichocarpa HOM05D004722 ORTHO05D005453 6.8e-13 77.4 74 63.5
Ciclev10017204m.g Citrus clementina HOM05D004722 ORTHO05D005453 8.9e-13 77.0 75 61.3
BcaC05g24363 Brassica carinata HOM05D004722 ORTHO05D005453 1.2e-12 76.6 74 59.5
Peaxi162Scf00402g00810 Petunia axillaris HOM05D004722 ORTHO05D005453 2.0e-12 75.9 60 73.3
Carub.0004s1325 Capsella rubella HOM05D004722 ORTHO05D005453 2.6e-12 75.5 91 50.5
Gorai.013G005600 Gossypium raimondii HOM05D004722 ORTHO05D005453 3.4e-12 75.1 94 52.1
Lalb_Chr01g0014951 Lupinus albus HOM05D004722 ORTHO05D005453 3.4e-12 75.1 75 58.7
AL1G15450 Arabidopsis lyrata HOM05D004722 ORTHO05D005453 4.4e-12 74.7 82 56.1
AL4G27260 Arabidopsis lyrata HOM05D004722 ORTHO05D005453 4.4e-12 74.7 72 59.7
A10p04290 Brassica napus HOM05D004722 ORTHO05D005453 4.4e-12 74.7 72 59.7
BraA10t42697Z Brassica rapa HOM05D004722 ORTHO05D005453 4.4e-12 74.7 72 59.7
BraA10t42701Z Brassica rapa HOM05D000875 ORTHO05D000684 4.4e-12 74.7 72 62.5
PGR119G0776 Punica granatum HOM05D004722 ORTHO05D005453 4.4e-12 74.7 66 63.6
THA.LOC104800946 Tarenaya hassleriana HOM05D004722 ORTHO05D005453 4.4e-12 74.7 71 62.0
BolC5t29171H Brassica oleracea HOM05D004722 ORTHO05D005453 5.8e-12 74.3 72 59.7
Gohir.A13G005400 Gossypium hirsutum HOM05D004722 ORTHO05D005453 7.5e-12 73.9 91 53.8
SalBow4G0008 Salvia bowleyana HOM05D004722 ORTHO05D005453 7.5e-12 73.9 66 66.7
Potri.003G215300 Populus trichocarpa HOM05D004722 ORTHO05D005453 9.9e-12 73.6 74 59.5
BcaB02g06840 Brassica carinata HOM05D004722 ORTHO05D005453 2.2e-11 72.4 69 59.4
Eucgr.B02611 Eucalyptus grandis HOM05D004722 ORTHO05D005453 2.2e-11 72.4 77 54.5
MD11G1015000 Malus domestica HOM05D004722 ORTHO05D005453 2.9e-11 72.0 65 56.9
Gohir.D04G014200 Gossypium hirsutum HOM05D004722 ORTHO05D005453 3.7e-11 71.6 77 59.7
Gorai.012G016800 Gossypium raimondii HOM05D004722 ORTHO05D005453 3.7e-11 71.6 77 59.7
Carub.0001s0489 Capsella rubella HOM05D004722 ORTHO05D005453 4.9e-11 71.2 72 56.9
Gohir.D13G005100 Gossypium hirsutum HOM05D004722 ORTHO05D005453 4.9e-11 71.2 65 61.5
DCAR_027044 Daucus carota HOM05D004722 ORTHO05D005453 6.4e-11 70.9 62 61.3
Gohir.A05G401550 Gossypium hirsutum HOM05D004722 ORTHO05D005453 6.4e-11 70.9 66 63.6
Prupe.6G012500 Prunus persica HOM05D004722 ORTHO05D005453 6.4e-11 70.9 73 57.5
AT2G31945 Arabidopsis thaliana HOM05D004722 ORTHO05D005453 8.3e-11 70.5 72 55.6
DCAR_027045 Daucus carota HOM05D004722 ORTHO05D005453 8.3e-11 70.5 71 54.9
Nn7g35982 Nelumbo nucifera HOM05D004722 ORTHO05D005453 8.3e-11 70.5 78 61.5
EL10Ac4g09616 Beta vulgaris HOM05D004722 ORTHO05D005453 1.1e-10 70.1 87 50.6
Oeu034890.1 Olea europaea HOM05D004722 ORTHO05D005453 1.1e-10 70.1 73 61.6
AL80U10030 Arabidopsis lyrata HOM05D004722 ORTHO05D005453 1.4e-10 69.7 65 63.1
Oeu032785.1 Olea europaea HOM05D004722 ORTHO05D005453 1.4e-10 69.7 78 57.7
RcHm_v2.0_Chr5g0081201 Rosa chinensis HOM05D004722 ORTHO05D005453 1.4e-10 69.7 80 53.8
Atru.chr3.2176 Acer truncatum HOM05D004722 ORTHO05D005453 2.4e-10 68.9 61 67.2
Sc06g0004360 Simmondsia chinensis HOM05D004722 ORTHO05D005453 2.4e-10 68.9 72 55.6
EL10Ac4g09615 Beta vulgaris HOM05D004722 ORTHO05D005453 3.2e-10 68.6 78 53.8
FvH4_3g44500 Fragaria vesca HOM05D004722 ORTHO05D005453 4.1e-10 68.2 77 53.2
FAN11G3093 Fragaria x ananassa HOM05D004722 ORTHO05D005453 4.1e-10 68.2 77 53.2
EL10Ac4g09614 Beta vulgaris HOM05D004722 ORTHO05D005453 7.1e-10 67.4 84 50.0
DCAR_023306 Daucus carota HOM05D004722 ORTHO05D005453 7.1e-10 67.4 70 55.7
Os02g0774200 Oryza sativa ssp. japonica HOM05D004722 ORTHO05D005453 7.1e-10 67.4 81 53.1
Zm00001eb100700 Zea mays HOM05D004722 ORTHO05D005453 9.2e-10 67.0 74 54.1
Cpa.g.sc119.96 Carica papaya HOM05D004722 ORTHO05D005453 1.6e-09 66.2 66 54.5
MD03G1011900 Malus domestica HOM05D004722 ORTHO05D005453 1.6e-09 66.2 55 61.8
Nitab4.5_0009236g0010 Nicotiana tabacum HOM05D004722 ORTHO05D005453 1.6e-09 66.2 84 58.3
Zm00001eb100710 Zea mays HOM05D004722 ORTHO05D005453 1.6e-09 66.2 72 54.2
Sed0018607 Sechium edule HOM05D004722 ORTHO05D005453 3.5e-09 65.1 74 54.1
Ah.06g190970 Amaranthus hybridus HOM05D004722 ORTHO05D005453 4.6e-09 64.7 90 44.4
Gohir.A10G182200 Gossypium hirsutum HOM05D004722 ORTHO05D005453 7.8e-09 63.9 78 53.8
HanXRQChr01g0021201 Helianthus annuus HOM05D004722 ORTHO05D005453 7.8e-09 63.9 63 60.3
MBI19_g17416_MAGBIO Magnolia biondii HOM05D004722 ORTHO05D005453 1.7e-08 62.8 68 55.9
Atru.chr3.2177 Acer truncatum HOM05D004722 ORTHO05D005453 3.0e-08 62.0 87 47.1
ATR0598G063 Amborella trichopoda HOM05D004722 ORTHO05D005453 3.9e-08 61.6 81 54.3
ClCG09G003700 Citrullus lanatus HOM05D004722 ORTHO05D005453 3.9e-08 61.6 65 55.4
Os09g0446700 Oryza sativa ssp. japonica HOM05D004722 ORTHO05D005453 3.9e-08 61.6 71 54.9
MBI19_g17417_MAGBIO Magnolia biondii HOM05D004722 ORTHO05D005453 5.1e-08 61.2 67 50.7
Zm00001eb193270 Zea mays HOM05D004722 ORTHO05D005453 8.6e-08 60.5 76 46.1
Os06g0207200 Oryza sativa ssp. japonica HOM05D004722 ORTHO05D005453 1.5e-07 59.7 86 44.2
Gorai.011G212200 Gossypium raimondii HOM05D004722 ORTHO05D005453 2.5e-07 58.9 78 52.6
FAN10G0002 Fragaria x ananassa HOM05D040482 ORTHO05D005453 9.5e-07 57.0 66 53.0
Zm00001eb373570 Zea mays HOM05D004722 ORTHO05D005453 1.2e-06 56.6 89 43.8
FvH4_7g00010 Fragaria vesca HOM05D040482 ORTHO05D005453 4.7e-06 54.7 60 60.0
HPP92_023476 Vanilla planifolia HOM05D004722 ORTHO05D005453 6.2e-06 54.3 79 46.8


User provided reference genes

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