Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0019296 Camellia sinensis var. sinensis HOM05D005163 ORTHO05D006462 0.0e+00 1315.1 642 100.0
Manes.02G100000 Manihot esculenta HOM05D005163 ORTHO05D006462 0.0e+00 1129.8 615 87.3
GSVIVG01018847001 Vitis vinifera HOM05D005163 ORTHO05D006462 0.0e+00 1129.8 615 88.3
Lj4C212G4 Lonicera japonica HOM05D005163 ORTHO05D006462 0.0e+00 1126.7 611 87.9
Hma1.2p1_0913F.1_g236050 Hydrangea macrophylla HOM05D005163 ORTHO05D006462 0.0e+00 1121.3 627 86.6
Thecc.01G025400 Theobroma cacao HOM05D005163 ORTHO05D006462 0.0e+00 1120.5 615 87.3
Ciclev10025040m.g Citrus clementina HOM05D005163 ORTHO05D006462 0.0e+00 1117.4 612 87.1
Gohir.A12G062100 Gossypium hirsutum HOM05D005163 ORTHO05D006462 0.0e+00 1117.1 615 86.3
TWI73G0422 Tripterygium wilfordii HOM05D005163 ORTHO05D006462 0.0e+00 1116.7 608 87.7
Cfa006924 Carpinus fangiana HOM05D005163 ORTHO05D006462 0.0e+00 1115.5 615 87.5
Haze_03825 Corylus avellana HOM05D005163 ORTHO05D006462 0.0e+00 1114.0 615 87.3
TAR376G0780 Trochodendron aralioides HOM05D005163 ORTHO05D006462 0.0e+00 1114.0 611 86.1
Rhsim08G0123900 Rhododendron simsii HOM05D005163 ORTHO05D006462 0.0e+00 1111.7 640 85.2
Gorai.008G065200 Gossypium raimondii HOM05D005163 ORTHO05D006462 0.0e+00 1111.3 615 86.0
Atru.chr3.745 Acer truncatum HOM05D005163 ORTHO05D006462 0.0e+00 1110.9 612 87.3
Potri.007G017600 Populus trichocarpa HOM05D005163 ORTHO05D006462 0.0e+00 1107.8 613 86.3
Potri.005G118300 Populus trichocarpa HOM05D005163 ORTHO05D006462 0.0e+00 1106.3 629 85.5
Actinidia19230 Actinidia chinensis HOM05D005163 ORTHO05D006462 0.0e+00 1098.6 612 86.8
Duzib187G1632 Durio zibethinus HOM05D005163 ORTHO05D006462 0.0e+00 1096.6 616 85.9
Sabra07G0015000 Salix brachista HOM05D005163 ORTHO05D006462 0.0e+00 1096.3 612 85.5
Eucgr.J02388 Eucalyptus grandis HOM05D005163 ORTHO05D006462 0.0e+00 1094.3 613 84.5
QL06p034609 Quercus lobata HOM05D005163 ORTHO05D006462 0.0e+00 1091.3 612 85.8
arahy.Tifrunner.gnm1.ann1.U2HICA Arachis hypogaea HOM05D005163 ORTHO05D006462 0.0e+00 1087.4 615 84.1
RcHm_v2.0_Chr2g0100261 Rosa chinensis HOM05D005163 ORTHO05D006462 0.0e+00 1087.4 610 85.2
arahy.Tifrunner.gnm1.ann1.U51VHD Arachis hypogaea HOM05D005163 ORTHO05D006462 0.0e+00 1086.6 615 84.1
Peaxi162Scf00084g01221 Petunia axillaris HOM05D005163 ORTHO05D006462 0.0e+00 1085.9 612 85.1
Cc07_g10240 Coffea canephora HOM05D005163 ORTHO05D006462 0.0e+00 1082.8 612 84.8
HanXRQChr14g0441521 Helianthus annuus HOM05D005163 ORTHO05D006462 0.0e+00 1081.2 612 83.7
Glyma.01G170600 Glycine max HOM05D005163 ORTHO05D006462 0.0e+00 1080.5 616 83.3
Aqoxy5G01510 Aquilegia oxysepala HOM05D005163 ORTHO05D006462 0.0e+00 1078.5 611 84.0
Nitab4.5_0000723g0040 Nicotiana tabacum HOM05D005163 ORTHO05D006462 0.0e+00 1078.5 612 83.8
MD02G1137100 Malus domestica HOM05D005163 ORTHO05D006462 0.0e+00 1076.2 611 83.6
VMungo1215G3295 Vigna mungo HOM05D005163 ORTHO05D006462 0.0e+00 1075.8 611 83.1
Lj2g0010053 Lotus japonicus HOM05D005163 ORTHO05D006462 0.0e+00 1075.1 611 83.5
FvH4_1g12400 Fragaria vesca HOM05D005163 ORTHO05D006462 4.4e-312 1074.7 610 84.6
Nitab4.5_0007070g0020 Nicotiana tabacum HOM05D005163 ORTHO05D006462 4.0e-311 1070.8 611 83.6
Ca_24882_v3 Cicer arietinum L. HOM05D005163 ORTHO05D006462 1.5e-310 1068.9 615 83.1
Phvul.002G166800 Phaseolus vulgaris HOM05D005163 ORTHO05D006462 1.9e-310 1068.5 611 82.5
HanXRQChr07g0191281 Helianthus annuus HOM05D005163 ORTHO05D006462 5.7e-310 1067.0 614 82.9
TPR.G2381 Trifolium pratense HOM05D005163 ORTHO05D006462 5.7e-310 1067.0 615 82.6
PGSC0003DMG400003539 Solanum tuberosum HOM05D005163 ORTHO05D006462 7.4e-310 1066.6 612 84.0
Glyma.11G072700 Glycine max HOM05D005163 ORTHO05D006462 9.7e-310 1066.2 615 82.6
Sed0007947 Sechium edule HOM05D005163 ORTHO05D006462 9.7e-310 1066.2 611 83.0
Sopen02g029360 Solanum pennellii HOM05D005163 ORTHO05D006462 9.7e-310 1066.2 612 83.8
MELO3C007876.2 Cucumis melo HOM05D005163 ORTHO05D006462 1.6e-309 1065.4 611 83.0
Gohir.D12G062000 Gossypium hirsutum HOM05D005163 ORTHO05D006462 1.6e-309 1065.4 585 86.2
Psat2g156920 Pisum sativum HOM05D005163 ORTHO05D006462 1.6e-309 1065.4 615 82.6
Sed0022975 Sechium edule HOM05D005163 ORTHO05D006462 1.6e-309 1065.4 611 82.2
CAN.G358.18 Capsicum annuum HOM05D005163 ORTHO05D006462 2.8e-309 1064.7 612 83.8
Solyc02g084690.3 Solanum lycopersicum HOM05D005163 ORTHO05D006462 2.8e-309 1064.7 612 83.7
PGR102G2820 Punica granatum HOM05D005163 ORTHO05D006462 6.3e-309 1063.5 615 82.8
ClCG01G020030 Citrullus lanatus HOM05D005163 ORTHO05D006462 2.4e-308 1061.6 615 82.3
Migut.H02494 Erythranthe guttata HOM05D005163 ORTHO05D006462 2.4e-308 1061.6 624 81.2
CsaV3_6G046790 Cucumis sativus L. HOM05D005163 ORTHO05D006462 4.5e-307 1057.4 611 82.0
SalBow8G4654 Salvia bowleyana HOM05D005163 ORTHO05D006462 4.5e-307 1057.4 611 83.0
MD15G1250800 Malus domestica HOM05D005163 ORTHO05D006462 7.7e-307 1056.6 611 82.5
Actinidia26108 Actinidia chinensis HOM05D005163 ORTHO05D006462 1.0e-306 1056.2 612 84.5
PSO541G1023 Papaver somniferum HOM05D005163 ORTHO05D006462 1.3e-306 1055.8 624 80.6
Lalb_Chr16g0377681 Lupinus albus HOM05D005163 ORTHO05D006462 6.5e-306 1053.5 615 81.5
Medtr5g021150 Medicago truncatula HOM05D005163 ORTHO05D006462 5.5e-305 1050.4 616 81.5
Ah.02g124830 Amaranthus hybridus HOM05D005163 ORTHO05D006462 2.1e-304 1048.5 621 80.8
Sc03g0003300 Simmondsia chinensis HOM05D005163 ORTHO05D006462 2.7e-304 1048.1 609 81.6
THA.LOC104826639 Tarenaya hassleriana HOM05D005163 ORTHO05D006462 4.6e-304 1047.3 614 81.6
MSTRG.23270 Avicennia marina HOM05D005163 ORTHO05D006462 1.8e-303 1045.4 612 82.2
Oeu024029.1 Olea europaea HOM05D005163 ORTHO05D006462 1.8e-303 1045.4 611 82.5
CANSAT01G3091 Cannabis sativa HOM05D005163 ORTHO05D006462 2.3e-303 1045.0 615 82.3
AUR62007635 Chenopodium quinoa HOM05D005163 ORTHO05D006462 2.3e-303 1045.0 636 79.7
Lalb_Chr05g0212611 Lupinus albus HOM05D005163 ORTHO05D006462 5.1e-303 1043.9 615 80.8
Aa31LG4G19160 Aethionema arabicum HOM05D005163 ORTHO05D006462 7.4e-302 1040.0 612 80.6
CARHR160630 Cardamine hirsuta HOM05D005163 ORTHO05D006462 9.7e-302 1039.6 613 79.9
PSO675G4614 Papaver somniferum HOM05D005163 ORTHO05D006462 1.7e-301 1038.9 624 79.6
Sp5g11160 Schrenkiella parvula HOM05D005163 ORTHO05D006462 3.1e-300 1034.6 612 79.9
Thhalv10010167m.g Eutrema salsugineum HOM05D005163 ORTHO05D006462 1.5e-299 1032.3 611 79.7
Lsat_1_v5_gn_2_78240 Lactuca sativa HOM05D005163 ORTHO05D006462 2.0e-299 1031.9 617 79.9
Hund16465 Selenicereus undatus HOM05D005163 ORTHO05D006462 3.4e-299 1031.2 615 80.7
Gorai.007G198300 Gossypium raimondii HOM05D005163 ORTHO05D006462 5.0e-298 1027.3 611 80.0
FAN19G3097 Fragaria x ananassa HOM05D005163 ORTHO05D006462 6.5e-298 1026.9 610 81.8
Gohir.A11G178900 Gossypium hirsutum HOM05D005163 ORTHO05D006462 1.1e-297 1026.2 611 79.9
FAN23G1678 Fragaria x ananassa HOM05D005163 ORTHO05D006462 1.9e-297 1025.4 610 81.6
Carub.0005s1745 Capsella rubella HOM05D005163 ORTHO05D006462 3.2e-297 1024.6 611 79.1
Prupe.7G163500 Prunus persica HOM05D005163 ORTHO05D006462 3.2e-297 1024.6 611 81.2
FAN28G1722 Fragaria x ananassa HOM05D005163 ORTHO05D006462 4.2e-297 1024.2 610 81.6
AT3G51050 Arabidopsis thaliana HOM05D005163 ORTHO05D006462 2.1e-296 1021.9 613 79.6
AL5G31470 Arabidopsis lyrata HOM05D005163 ORTHO05D006462 1.4e-295 1019.2 613 79.3
Oeu005146.2 Olea europaea HOM05D005163 ORTHO05D006462 6.7e-295 1016.9 676 75.0
C07p46120 Brassica napus HOM05D005163 ORTHO05D006462 1.1e-294 1016.1 611 77.7
Nn5g29168 Nelumbo nucifera HOM05D005163 ORTHO05D006462 2.8e-293 1011.5 623 79.0
EL10As8g23870 Beta vulgaris HOM05D005163 ORTHO05D006462 2.4e-292 1008.4 610 79.7
SGA_v2.0_scaffold280G46851 Striga asiatica HOM05D005163 ORTHO05D006462 3.1e-292 1008.1 619 78.5
BolC7t45128H Brassica oleracea HOM05D005163 ORTHO05D006462 5.9e-291 1003.8 604 77.6
Duzib147G0248 Durio zibethinus HOM05D005163 ORTHO05D006462 5.0e-290 1000.7 612 79.7
COL.COLO4_21984 Corchorus olitorius HOM05D005163 ORTHO05D006462 1.9e-289 998.8 639 76.5
CDE04G3147 Ceratophyllum demersum HOM05D005163 ORTHO05D006462 7.2e-289 996.9 613 76.8
AUR62004121 Chenopodium quinoa HOM05D005163 ORTHO05D006462 6.1e-288 993.8 658 75.5
A03p48100 Brassica napus HOM05D005163 ORTHO05D006462 9.7e-286 986.5 630 74.4
ECA238G0541 Erigeron canadensis HOM05D005163 ORTHO05D006462 4.8e-285 984.2 564 82.3
ATR0661G156 Amborella trichopoda HOM05D005163 ORTHO05D006462 1.1e-284 983.0 611 76.3
DCAR_031672 Daucus carota HOM05D005163 ORTHO05D006462 2.5e-281 971.8 612 78.4
HPP92_021000 Vanilla planifolia HOM05D005163 ORTHO05D006462 8.0e-280 966.8 611 75.9
Cpa.g.sc6.195 Carica papaya HOM05D005163 ORTHO05D006462 4.8e-277 957.6 615 76.9
Os02g0100700 Oryza sativa ssp. japonica HOM05D005163 ORTHO05D006462 4.2e-273 944.5 615 74.8
Gohir.D11G186500 Gossypium hirsutum HOM05D005163 ORTHO05D006462 1.3e-269 932.9 581 77.5
Zm00001eb228990 Zea mays HOM05D005163 ORTHO05D006462 1.0e-266 923.3 615 72.5
BcaC06g33060 Brassica carinata HOM05D005163 ORTHO05D006462 1.7e-258 896.0 607 71.5
vmacro17732 Vaccinium macrocarpon HOM05D005163 ORTHO05D006462 5.4e-244 847.8 474 87.6
Sabra05G0097300 Salix brachista HOM05D005163 ORTHO05D006462 2.7e-235 818.9 641 67.1
CiPaw.07G054500 Carya illinoinensis HOM05D005163 ORTHO05D006462 3.4e-230 802.0 457 84.7
Dinv40040 Davidia involucrata HOM05D005163 ORTHO05D006462 1.3e-224 783.5 484 79.1
Mapoly0159s0016 Marchantia polymorpha HOM05D005163 ORTHO05D006462 2.0e-214 749.6 627 58.7
Pp3c2_36750 Physcomitrium patens HOM05D005163 ORTHO05D006462 3.7e-200 702.2 627 56.5
Pp3c2_36751 Physcomitrium patens HOM05D005163 ORTHO05D006462 3.7e-200 702.2 627 56.5
Pp3c2_37540 Physcomitrium patens HOM05D005163 ORTHO05D006462 2.6e-198 696.0 627 56.5
FAN26G0993 Fragaria x ananassa HOM05D005163 ORTHO05D006462 3.4e-198 695.7 388 86.1
SMO340G0175 Selaginella moellendorffii HOM05D005163 ORTHO05D006462 4.6e-195 685.3 613 55.5
Pp3c11_13530 Physcomitrium patens HOM05D005163 ORTHO05D006462 1.4e-191 673.7 625 54.7
AagrBONN_evm.TU.Sc2ySwM_368.2341 Anthoceros agrestis HOM05D005163 ORTHO05D006462 4.4e-185 652.1 639 55.2
C08p26360 Brassica napus HOM05D005163 ORTHO05D006462 1.2e-139 501.1 509 54.6
CBR_g41477 Chara braunii HOM05D005163 ORTHO05D006462 1.6e-134 484.2 648 42.7
Dinv33585 Davidia involucrata HOM05D005163 ORTHO05D006462 9.6e-116 421.8 248 82.3
unitig_699.g19557 Utricularia gibba HOM05D005163 ORTHO05D006462 2.9e-112 410.2 307 66.1
SEGI_18766 Sequoiadendron giganteum HOM05D005163 ORTHO05D006462 3.2e-103 380.2 269 67.7
MCO09G435 Micromonas commoda HOM05D005163 ORTHO05D006462 2.1e-99 367.5 638 37.1
Cre07.g336050 Chlamydomonas reinhardtii HOM05D005163 ORTHO05D006462 1.4e-82 311.6 728 31.5
Hma1.2p1_0913F.1_g236060 Hydrangea macrophylla HOM05D005163 ORTHO05D006462 1.0e-80 305.4 251 65.3
unitig_699.g19558 Utricularia gibba HOM05D005163 ORTHO05D006462 1.6e-78 298.1 179 78.8
Dinv33586 Davidia involucrata HOM05D005163 ORTHO05D006462 1.1e-76 292.0 194 74.2
BcaC07g39583 Brassica carinata HOM05D005163 ORTHO05D006462 3.3e-76 290.4 247 61.1
MBI01_g27921_MAGBIO Magnolia biondii HOM05D005163 ORTHO05D006462 4.7e-70 270.0 259 55.6
PRCOL_00007058 Prasinoderma coloniale HOM05D005163 ORTHO05D006462 1.4e-66 258.5 639 31.9
A09p44140 Brassica napus HOM05D005163 ORTHO05D006462 3.0e-61 240.7 235 55.3
SEGI_33135 Sequoiadendron giganteum HOM05D005163 ORTHO05D006462 7.0e-50 203.0 124 71.8
SHI08600 Sapria himalayana HOM05D005163 ORTHO05D006462 2.5e-47 194.5 127 70.1
CDE12G0395 Ceratophyllum demersum HOM05D005163 ORTHO05D006462 8.9e-37 159.5 232 42.7
BraA09t39874Z Brassica rapa HOM05D005163 ORTHO05D006462 2.6e-36 157.9 93 80.6
Hund14017 Selenicereus undatus HOM05D005163 ORTHO05D006462 6.0e-25 120.2 84 64.3
TAR625G0301 Trochodendron aralioides HOM05D005163 ORTHO05D006462 1.6e-22 112.1 86 60.5
SHI08598 Sapria himalayana HOM05D005163 ORTHO05D006462 2.4e-18 98.2 87 58.6
BcaB05g23544 Brassica carinata HOM05D005163 ORTHO05D006462 3.9e-16 90.9 67 71.6
BolC8t50252H Brassica oleracea HOM05D005163 ORTHO05D041294 3.6e-14 84.3 51 78.4
C08p26350 Brassica napus HOM05D005163 ORTHO05D041294 3.1e-13 81.3 51 72.5
MBI01_g27920_MAGBIO Magnolia biondii HOM05D005163 ORTHO05D000004 3.3e-07 61.2 33 84.8


User provided reference genes

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