Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0019251 Camellia sinensis var. sinensis HOM05D004562 ORTHO05D005435 0.0e+00 1426.4 723 100.0
Dinv02642 Davidia involucrata HOM05D004562 ORTHO05D005435 2.7e-292 1008.4 718 74.5
vmacro16407 Vaccinium macrocarpon HOM05D004562 ORTHO05D005435 1.3e-291 1006.1 722 74.2
Rhsim12G0137700 Rhododendron simsii HOM05D004562 ORTHO05D005435 3.1e-288 995.0 722 74.1
Actinidia35140 Actinidia chinensis HOM05D004562 ORTHO05D005435 3.5e-284 981.5 718 73.7
TAR374G0462 Trochodendron aralioides HOM05D004562 ORTHO05D005435 8.2e-257 890.6 726 66.4
COL.COLO4_28896 Corchorus olitorius HOM05D004562 ORTHO05D005435 8.2e-249 864.0 699 66.2
Actinidia18882 Actinidia chinensis HOM05D004562 ORTHO05D005435 8.5e-246 854.0 605 74.9
CiPaw.16G096100 Carya illinoinensis HOM05D004562 ORTHO05D005435 5.5e-245 851.3 717 64.4
Gohir.A12G270000 Gossypium hirsutum HOM05D004562 ORTHO05D005435 7.2e-245 850.9 705 65.5
Gorai.008G290800 Gossypium raimondii HOM05D004562 ORTHO05D005435 7.2e-245 850.9 705 65.7
Gohir.D12G270500 Gossypium hirsutum HOM05D004562 ORTHO05D005435 4.7e-244 848.2 705 65.5
QL10p030682 Quercus lobata HOM05D004562 ORTHO05D005435 6.7e-243 844.3 696 65.4
Cfa019638 Carpinus fangiana HOM05D004562 ORTHO05D005435 6.3e-241 837.8 700 64.9
Migut.D01318 Erythranthe guttata HOM05D004562 ORTHO05D005435 1.1e-240 837.0 721 63.4
Prupe.5G234800 Prunus persica HOM05D004562 ORTHO05D005435 4.2e-237 825.1 719 63.4
CANSAT80G2549 Cannabis sativa HOM05D004562 ORTHO05D005435 5.5e-237 824.7 700 64.1
MELO3C017375.2 Cucumis melo HOM05D004562 ORTHO05D005435 7.2e-237 824.3 709 63.0
Peaxi162Scf00314g00332 Petunia axillaris HOM05D004562 ORTHO05D005435 1.6e-236 823.2 678 65.2
Cc04_g06100 Coffea canephora HOM05D004562 ORTHO05D005435 3.6e-236 822.0 704 65.1
Sed0003970 Sechium edule HOM05D004562 ORTHO05D005435 6.1e-236 821.2 716 63.4
CsaV3_1G004480 Cucumis sativus L. HOM05D004562 ORTHO05D005435 1.8e-235 819.7 709 63.2
Gorai.005G132200 Gossypium raimondii HOM05D004562 ORTHO05D005435 4.4e-234 815.1 713 62.0
Ciclev10007290m.g Citrus clementina HOM05D004562 ORTHO05D005435 2.8e-233 812.4 696 62.8
PGSC0003DMG400005676 Solanum tuberosum HOM05D004562 ORTHO05D005435 2.4e-232 809.3 678 64.6
CiPaw.15G144500 Carya illinoinensis HOM05D004562 ORTHO05D005435 5.3e-232 808.1 699 62.7
Gohir.D02G121900 Gossypium hirsutum HOM05D004562 ORTHO05D005435 5.3e-232 808.1 715 61.8
Nn4g24285 Nelumbo nucifera HOM05D004562 ORTHO05D005435 2.7e-231 805.8 702 63.8
RcHm_v2.0_Chr7g0178201 Rosa chinensis HOM05D004562 ORTHO05D005435 1.0e-230 803.9 687 64.9
CAN.G843.49 Capsicum annuum HOM05D004562 ORTHO05D005435 1.1e-229 800.4 683 64.1
FvH4_5g17490 Fragaria vesca HOM05D004562 ORTHO05D005435 1.1e-229 800.4 666 64.9
FAN18G3714 Fragaria x ananassa HOM05D004562 ORTHO05D005435 1.1e-229 800.4 666 64.9
MBI13_g01852_MAGBIO Magnolia biondii HOM05D004562 ORTHO05D005435 1.1e-229 800.4 724 60.6
MD14G1237500 Malus domestica HOM05D004562 ORTHO05D005435 3.2e-229 798.9 671 65.7
TWI60G0891 Tripterygium wilfordii HOM05D004562 ORTHO05D005435 3.2e-229 798.9 679 63.6
Sopen03g037570 Solanum pennellii HOM05D004562 ORTHO05D005435 2.7e-228 795.8 639 65.6
Ca_17180_v3 Cicer arietinum L. HOM05D004562 ORTHO05D005435 3.6e-228 795.4 708 61.9
Oeu026264.3 Olea europaea HOM05D004562 ORTHO05D005435 1.8e-227 793.1 674 63.8
Solyc03g118620.3 Solanum lycopersicum HOM05D004562 ORTHO05D005435 3.0e-227 792.3 639 65.3
FAN13G2245 Fragaria x ananassa HOM05D004562 ORTHO05D005435 4.0e-227 792.0 666 64.9
Sed0022497 Sechium edule HOM05D004562 ORTHO05D005435 1.5e-226 790.0 715 60.4
FAN08G1802 Fragaria x ananassa HOM05D004562 ORTHO05D005435 2.0e-226 789.6 666 64.4
Lalb_Chr09g0330331 Lupinus albus HOM05D004562 ORTHO05D005435 7.5e-226 787.7 706 60.2
PGR044G1246 Punica granatum HOM05D004562 ORTHO05D005435 1.3e-225 786.9 667 64.6
MSTRG.9309 Avicennia marina HOM05D004562 ORTHO05D005435 6.3e-225 784.6 672 63.2
Glyma.08G055400 Glycine max HOM05D004562 ORTHO05D005435 6.3e-225 784.6 711 60.2
Glyma.05G247000 Glycine max HOM05D004562 ORTHO05D005435 2.4e-224 782.7 711 59.6
FAN04G0449 Fragaria x ananassa HOM05D004562 ORTHO05D005435 3.1e-224 782.3 666 64.9
SalBow1G2489 Salvia bowleyana HOM05D004562 ORTHO05D005435 1.9e-221 773.1 668 63.6
SGA_v2.0_scaffold172G39021 Striga asiatica HOM05D004562 ORTHO05D005435 1.9e-221 773.1 722 60.5
Lj4g0011431 Lotus japonicus HOM05D004562 ORTHO05D005435 3.2e-221 772.3 698 60.9
Medtr8g107440 Medicago truncatula HOM05D004562 ORTHO05D005435 4.2e-221 771.9 657 64.1
Psat7g001240 Pisum sativum HOM05D004562 ORTHO05D005435 4.7e-220 768.5 707 59.5
MD06G1228300 Malus domestica HOM05D004562 ORTHO05D005435 2.3e-219 766.1 681 62.0
Eucgr.K02277 Eucalyptus grandis HOM05D004562 ORTHO05D005435 1.5e-218 763.5 670 63.1
Haze_18884 Corylus avellana HOM05D004562 ORTHO05D005435 7.5e-218 761.1 702 60.1
Phvul.002G331100 Phaseolus vulgaris HOM05D004562 ORTHO05D005435 7.5e-218 761.1 711 59.4
Aqoxy3G00029 Aquilegia oxysepala HOM05D004562 ORTHO05D005435 2.8e-217 759.2 705 60.1
Lalb_Chr05g0221581 Lupinus albus HOM05D004562 ORTHO05D005435 8.3e-217 757.7 707 58.8
arahy.Tifrunner.gnm1.ann1.G227WQ Arachis hypogaea HOM05D004562 ORTHO05D005435 3.5e-215 752.3 706 58.9
AUR62029906 Chenopodium quinoa HOM05D004562 ORTHO05D005435 1.0e-214 750.7 671 61.1
Potri.015G036300 Populus trichocarpa HOM05D004562 ORTHO05D005435 2.3e-214 749.6 700 59.0
AUR62033795 Chenopodium quinoa HOM05D004562 ORTHO05D005435 6.6e-214 748.0 672 61.3
arahy.Tifrunner.gnm1.ann1.WQ60SD Arachis hypogaea HOM05D004562 ORTHO05D005435 4.3e-213 745.3 706 58.6
HanXRQChr09g0268071 Helianthus annuus HOM05D004562 ORTHO05D005435 1.2e-212 743.8 649 62.4
EL10Ac8g19501 Beta vulgaris HOM05D004562 ORTHO05D005435 2.8e-212 742.7 671 60.4
TPR.G1465 Trifolium pratense HOM05D004562 ORTHO05D005435 4.0e-211 738.8 637 63.3
Lj5A159T41 Lonicera japonica HOM05D004562 ORTHO05D005435 8.9e-211 737.6 733 58.8
Sabra15G0029800 Salix brachista HOM05D004562 ORTHO05D005435 8.9e-211 737.6 702 59.0
PSO478G3379 Papaver somniferum HOM05D004562 ORTHO05D005435 1.5e-210 736.9 701 59.2
DCAR_011617 Daucus carota HOM05D004562 ORTHO05D005435 4.9e-209 731.9 719 58.4
Nitab4.5_0001264g0030 Nicotiana tabacum HOM05D004562 ORTHO05D005435 4.1e-208 728.8 558 69.2
ClCG06G014190 Citrullus lanatus HOM05D004562 ORTHO05D005435 5.4e-208 728.4 709 59.2
GSVIVG01008458001 Vitis vinifera HOM05D004562 ORTHO05D005435 1.0e-206 724.2 717 59.1
Ah.14g085940 Amaranthus hybridus HOM05D004562 ORTHO05D005435 3.9e-206 722.2 651 60.8
ATR0753G019 Amborella trichopoda HOM05D004562 ORTHO05D005435 2.5e-205 719.5 721 55.6
Sc12g0007950 Simmondsia chinensis HOM05D004562 ORTHO05D005435 4.3e-205 718.8 696 58.6
Nn3g18314 Nelumbo nucifera HOM05D004562 ORTHO05D005435 5.6e-205 718.4 722 57.1
Manes.06G004700 Manihot esculenta HOM05D004562 ORTHO05D005435 1.6e-204 716.8 685 59.1
Hund22308 Selenicereus undatus HOM05D004562 ORTHO05D005435 4.7e-204 715.3 664 59.5
Lsat_1_v5_gn_2_14940 Lactuca sativa HOM05D004562 ORTHO05D005435 5.2e-203 711.8 708 57.9
Potri.012G045300 Populus trichocarpa HOM05D004562 ORTHO05D005435 2.9e-201 706.1 552 67.9
THA.LOC104820345 Tarenaya hassleriana HOM05D004562 ORTHO05D005435 1.6e-199 700.3 721 56.0
ECA238G1924 Erigeron canadensis HOM05D004562 ORTHO05D005435 1.7e-198 696.8 638 59.7
VMungo0251G1597 Vigna mungo HOM05D004562 ORTHO05D005435 3.9e-198 695.7 708 55.8
Nitab4.5_0010397g0020 Nicotiana tabacum HOM05D004562 ORTHO05D005435 3.3e-197 692.6 444 79.1
HanXRQChr02g0032401 Helianthus annuus HOM05D004562 ORTHO05D005435 7.3e-197 691.4 648 59.0
PSO017G6436 Papaver somniferum HOM05D004562 ORTHO05D005435 9.5e-197 691.0 702 56.3
Duzib205G1225 Durio zibethinus HOM05D004562 ORTHO05D005435 4.1e-192 675.6 725 54.2
Thecc.03G058700 Theobroma cacao HOM05D004562 ORTHO05D005435 1.6e-191 673.7 707 55.9
CARHR038150 Cardamine hirsuta HOM05D004562 ORTHO05D005435 7.8e-191 671.4 658 55.8
AL1G55180 Arabidopsis lyrata HOM05D004562 ORTHO05D005435 3.3e-189 666.0 645 56.7
Carub.0003s1765 Capsella rubella HOM05D004562 ORTHO05D005435 8.1e-188 661.4 656 55.8
AT1G48540 Arabidopsis thaliana HOM05D004562 ORTHO05D005435 3.1e-187 659.4 649 55.6
A06p04420 Brassica napus HOM05D004562 ORTHO05D005435 3.1e-187 659.4 647 56.4
Carub.0001s3765 Capsella rubella HOM05D004562 ORTHO05D005435 4.0e-187 659.1 649 55.9
Sp3g16040 Schrenkiella parvula HOM05D004562 ORTHO05D005435 2.6e-186 656.4 655 56.6
BcaB07g33749 Brassica carinata HOM05D004562 ORTHO05D005435 7.6e-186 654.8 643 55.4
AT3G17920 Arabidopsis thaliana HOM05D004562 ORTHO05D005435 2.9e-185 652.9 655 56.3
Thhalv10019973m.g Eutrema salsugineum HOM05D004562 ORTHO05D005435 1.1e-184 651.0 655 55.7
Sp1g35480 Schrenkiella parvula HOM05D004562 ORTHO05D005435 1.1e-184 651.0 643 55.8
BraA05t22020Z Brassica rapa HOM05D004562 ORTHO05D005435 1.9e-184 650.2 655 55.3
Aa31LG10G5260 Aethionema arabicum HOM05D004562 ORTHO05D005435 5.4e-184 648.7 722 53.0
BolC6t35426H Brassica oleracea HOM05D004562 ORTHO05D005435 7.1e-184 648.3 646 55.7
C06p03060 Brassica napus HOM05D004562 ORTHO05D005435 9.2e-184 647.9 646 55.6
CARHR093250 Cardamine hirsuta HOM05D004562 ORTHO05D005435 9.2e-184 647.9 655 54.5
BcaC08g43044 Brassica carinata HOM05D004562 ORTHO05D005435 2.1e-183 646.7 646 55.6
Thhalv10011201m.g Eutrema salsugineum HOM05D004562 ORTHO05D005435 3.5e-183 646.0 647 55.2
BcaC05g28736 Brassica carinata HOM05D004562 ORTHO05D005435 4.6e-183 645.6 657 54.9
A05p31880 Brassica napus HOM05D004562 ORTHO05D005435 4.6e-183 645.6 657 55.1
BolC5t33574H Brassica oleracea HOM05D004562 ORTHO05D005435 4.6e-183 645.6 657 54.9
AL3G31090 Arabidopsis lyrata HOM05D004562 ORTHO05D005435 3.0e-182 642.9 668 54.6
BcaB06g25854 Brassica carinata HOM05D004562 ORTHO05D005435 1.9e-181 640.2 657 55.1
unitig_46.g18720 Utricularia gibba HOM05D004562 ORTHO05D005435 1.2e-180 637.5 655 55.9
C05p48370 Brassica napus HOM05D004562 ORTHO05D005435 3.6e-180 636.0 657 54.8
BraA06t23647Z Brassica rapa HOM05D004562 ORTHO05D005435 1.4e-179 634.0 678 52.4
HPP92_016742 Vanilla planifolia HOM05D004562 ORTHO05D005435 2.6e-178 629.8 669 53.5
Aa31LG8G4790 Aethionema arabicum HOM05D004562 ORTHO05D005435 3.8e-177 625.9 692 52.2
Cpa.g.sc3.379 Carica papaya HOM05D004562 ORTHO05D005435 2.1e-175 620.2 663 55.8
Zm00001eb008950 Zea mays HOM05D004562 ORTHO05D005435 6.0e-175 618.6 687 51.2
Os03g0221800 Oryza sativa ssp. japonica HOM05D004562 ORTHO05D005435 1.3e-164 584.3 646 53.1
SEGI_15130 Sequoiadendron giganteum HOM05D004562 ORTHO05D005435 4.8e-156 555.8 778 45.8
CSS0012259 Camellia sinensis var. sinensis HOM05D004562 ORTHO05D005435 5.1e-142 509.2 405 68.6
CSS0042944 Camellia sinensis var. sinensis HOM05D004562 ORTHO05D005435 6.7e-142 508.8 405 68.4
CDE05G0309 Ceratophyllum demersum HOM05D004562 ORTHO05D005435 1.2e-135 488.0 658 47.4
CSS0009282 Camellia sinensis var. sinensis HOM05D004562 ORTHO05D005435 4.1e-131 473.0 268 91.4
CSS0039239 Camellia sinensis var. sinensis HOM05D004562 ORTHO05D005435 4.1e-131 473.0 268 91.4
Atru.chr9.1669 Acer truncatum HOM05D004562 ORTHO05D005435 2.7e-127 460.3 453 57.2
Pp3c10_10590 Physcomitrium patens HOM05D004562 ORTHO05D005435 4.7e-127 459.5 520 50.2
Mapoly0118s0042 Marchantia polymorpha HOM05D004562 ORTHO05D005435 2.8e-124 450.3 709 40.5
Gohir.A03G092940 Gossypium hirsutum HOM05D004562 ORTHO05D005435 5.0e-113 412.9 447 53.0
Manes.14G172200 Manihot esculenta HOM05D004562 ORTHO05D005435 1.0e-105 388.7 462 50.2
AagrBONN_evm.TU.Sc2ySwM_228.5527 Anthoceros agrestis HOM05D004562 ORTHO05D005435 4.0e-102 376.7 328 57.6
Sabra12G0031500 Salix brachista HOM05D004562 ORTHO05D005435 2.4e-99 367.5 482 47.5
Gohir.A03G092980 Gossypium hirsutum HOM05D004562 ORTHO05D005435 7.0e-91 339.3 206 83.0
Duzib084G0184 Durio zibethinus HOM05D004562 ORTHO05D005435 2.9e-68 264.2 397 43.8
CBR_g38780 Chara braunii HOM05D004562 ORTHO05D005435 4.7e-63 246.9 226 55.8
Hma1.2p1_0163F.1_g072990 Hydrangea macrophylla HOM05D004562 ORTHO05D005435 3.2e-59 234.2 305 49.8
SHI19076 Sapria himalayana HOM05D004562 ORTHO05D005435 2.6e-53 214.5 142 76.1
CAN.G59.9 Capsicum annuum HOM05D004562 ORTHO05D005435 3.9e-41 174.1 154 63.6
SHI19074 Sapria himalayana HOM05D004562 ORTHO05D005435 3.7e-39 167.5 129 64.3
CAN.G1490.14 Capsicum annuum HOM05D004562 ORTHO05D005435 3.4e-37 161.0 91 89.0
CAN.G1687.2 Capsicum annuum HOM05D004562 ORTHO05D005435 2.5e-32 144.8 159 56.0
SHI19075 Sapria himalayana HOM05D004562 ORTHO05D005435 9.0e-30 136.3 91 72.5
MCO11G516 Micromonas commoda HOM05D004562 ORTHO05D005435 1.6e-26 125.6 385 30.1
CAN.G22.26 Capsicum annuum HOM05D001423 ORTHO05D001412 1.0e-17 96.3 67 65.7
AUR62044432 Chenopodium quinoa HOM05D004562 ORTHO05D005435 1.8e-17 95.5 288 31.6
SHI19073 Sapria himalayana HOM05D004562 ORTHO05D005435 2.2e-15 88.6 300 29.0
AagrBONN_evm.TU.Sc2ySwM_368.1004 Anthoceros agrestis HOM05D016773 ORTHO05D019668 3.9e-09 67.8 182 30.8
SEGI_31258 Sequoiadendron giganteum HOM05D004562 ORTHO05D005435 1.1e-08 66.2 370 25.7
Cfa024768 Carpinus fangiana HOM05D005225 ORTHO05D124687 7.4e-08 63.5 162 30.2


User provided reference genes

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