Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0019244 Camellia sinensis var. sinensis HOM05D003683 ORTHO05D004143 1.1e-54 216.5 114 100.0
Dinv39058 Davidia involucrata HOM05D003683 ORTHO05D004143 1.6e-34 149.4 108 78.7
CSS0021060 Camellia sinensis var. sinensis HOM05D003683 ORTHO05D004143 2.1e-34 149.1 114 73.7
Actinidia14483 Actinidia chinensis HOM05D003683 ORTHO05D004143 9.9e-32 140.2 115 71.3
Dinv37740 Davidia involucrata HOM05D003683 ORTHO05D004143 5.1e-28 127.9 108 66.7
CAN.G630.45 Capsicum annuum HOM05D003683 ORTHO05D004143 7.3e-27 124.0 101 70.3
GSVIVG01019925001 Vitis vinifera HOM05D003683 ORTHO05D004143 8.1e-26 120.6 105 64.8
vmacro00217 Vaccinium macrocarpon HOM05D003683 ORTHO05D004143 2.4e-25 119.0 101 73.3
PGSC0003DMG400003921 Solanum tuberosum HOM05D003683 ORTHO05D004143 1.2e-24 116.7 102 65.7
Hma1.2p1_0138F.1_g062970 Hydrangea macrophylla HOM05D003683 ORTHO05D004143 2.0e-24 115.9 93 72.0
Sopen08g028050 Solanum pennellii HOM05D003683 ORTHO05D004143 3.4e-24 115.2 102 64.7
Oeu064712.1 Olea europaea HOM05D003683 ORTHO05D004143 5.8e-24 114.4 99 66.7
CiPaw.11G145300 Carya illinoinensis HOM05D003683 ORTHO05D004143 1.3e-23 113.2 104 64.4
Haze_09035 Corylus avellana HOM05D003683 ORTHO05D004143 1.3e-23 113.2 102 67.6
Solyc08g079690.4 Solanum lycopersicum HOM05D003683 ORTHO05D004143 1.3e-23 113.2 101 65.3
Peaxi162Scf00102g01336 Petunia axillaris HOM05D003683 ORTHO05D004143 1.7e-23 112.8 103 66.0
Thecc.03G264300 Theobroma cacao HOM05D003683 ORTHO05D004143 1.7e-23 112.8 109 60.6
COL.COLO4_23839 Corchorus olitorius HOM05D003683 ORTHO05D004143 3.8e-23 111.7 110 61.8
Cfa012041 Carpinus fangiana HOM05D003683 ORTHO05D004143 6.4e-23 110.9 102 65.7
Manes.02G031900 Manihot esculenta HOM05D003683 ORTHO05D004143 1.4e-22 109.8 105 62.9
Rhsim11G0007500 Rhododendron simsii HOM05D003683 ORTHO05D004143 5.4e-22 107.8 94 68.1
Sopen08g003530 Solanum pennellii HOM05D003683 ORTHO05D004143 5.4e-22 107.8 107 63.6
Cc08_g13490 Coffea canephora HOM05D003683 ORTHO05D004143 1.2e-21 106.7 90 64.4
Gohir.A12G222400 Gossypium hirsutum HOM05D003683 ORTHO05D004143 1.2e-21 106.7 112 58.9
PGSC0003DMG400012487 Solanum tuberosum HOM05D003683 ORTHO05D004143 1.2e-21 106.7 104 64.4
CiPaw.12G102800 Carya illinoinensis HOM05D003683 ORTHO05D004143 2.1e-21 105.9 112 59.8
QL12p015617 Quercus lobata HOM05D003683 ORTHO05D004143 2.1e-21 105.9 107 59.8
Gohir.A03G010200 Gossypium hirsutum HOM05D003683 ORTHO05D004143 7.8e-21 104.0 109 58.7
Gorai.008G241000 Gossypium raimondii HOM05D003683 ORTHO05D004143 7.8e-21 104.0 112 58.0
Gohir.D03G159600 Gossypium hirsutum HOM05D003683 ORTHO05D004143 1.7e-20 102.8 109 58.7
TAR375G1063 Trochodendron aralioides HOM05D003683 ORTHO05D004143 3.0e-20 102.1 106 57.5
Sabra01G0087900 Salix brachista HOM05D003683 ORTHO05D004143 5.1e-20 101.3 104 62.5
Nitab4.5_0000439g0100 Nicotiana tabacum HOM05D003683 ORTHO05D004143 6.6e-20 100.9 106 60.4
Manes.01G071300 Manihot esculenta HOM05D003683 ORTHO05D004143 8.7e-20 100.5 105 58.1
Nitab4.5_0006122g0030 Nicotiana tabacum HOM05D003683 ORTHO05D004143 8.7e-20 100.5 114 56.1
Potri.001G114900 Populus trichocarpa HOM05D003683 ORTHO05D004143 8.7e-20 100.5 105 62.9
Gorai.003G167900 Gossypium raimondii HOM05D003683 ORTHO05D004143 1.1e-19 100.1 109 57.8
Atru.chr9.1472 Acer truncatum HOM05D003683 ORTHO05D004143 1.5e-19 99.8 112 58.9
Oeu056803.1 Olea europaea HOM05D003683 ORTHO05D004143 1.5e-19 99.8 99 57.6
Actinidia02072 Actinidia chinensis HOM05D003683 ORTHO05D004143 1.9e-19 99.4 84 67.9
Gohir.D12G224900 Gossypium hirsutum HOM05D003683 ORTHO05D004143 1.9e-19 99.4 112 56.2
Potri.003G117200 Populus trichocarpa HOM05D003683 ORTHO05D004143 1.9e-19 99.4 108 60.2
Lj2A204T52 Lonicera japonica HOM05D003683 ORTHO05D004143 4.3e-19 98.2 96 62.5
Sed0004645 Sechium edule HOM05D003683 ORTHO05D004143 1.6e-18 96.3 97 57.7
MELO3C005596.2 Cucumis melo HOM05D003683 ORTHO05D004143 2.8e-18 95.5 92 58.7
ClCG01G003480 Citrullus lanatus HOM05D003683 ORTHO05D004143 1.1e-17 93.6 92 58.7
CsaV3_5G003580 Cucumis sativus L. HOM05D003683 ORTHO05D004143 1.4e-17 93.2 92 57.6
Sabra03G0081600 Salix brachista HOM05D003683 ORTHO05D004143 2.4e-17 92.4 108 56.5
DCAR_008443 Daucus carota HOM05D003683 ORTHO05D004143 5.3e-17 91.3 103 55.3
MSTRG.13795 Avicennia marina HOM05D003683 ORTHO05D004143 2.0e-16 89.4 113 54.0
Sed0005281 Sechium edule HOM05D003683 ORTHO05D004143 2.0e-16 89.4 68 66.2
Ciclev10023705m.g Citrus clementina HOM05D003683 ORTHO05D004143 3.4e-16 88.6 92 58.7
TWI60G0451 Tripterygium wilfordii HOM05D003683 ORTHO05D004143 5.8e-16 87.8 105 54.3
Dinv43725 Davidia involucrata HOM05D003683 ORTHO05D004143 9.9e-16 87.0 98 53.1
PGR042G1830 Punica granatum HOM05D003683 ORTHO05D004143 2.2e-15 85.9 92 55.4
Lsat_1_v5_gn_6_10220 Lactuca sativa HOM05D003683 ORTHO05D004143 3.8e-15 85.1 97 51.5
Eucgr.E00491 Eucalyptus grandis HOM05D003683 ORTHO05D004143 6.4e-15 84.3 92 55.4
TAR629G0669 Trochodendron aralioides HOM05D003683 ORTHO05D004143 1.1e-14 83.6 92 58.7
Dinv32390 Davidia involucrata HOM05D003683 ORTHO05D004143 2.4e-14 82.4 99 54.5
TAR629G3017 Trochodendron aralioides HOM05D003683 ORTHO05D004143 4.2e-14 81.6 92 57.6
FAN10G4272 Fragaria x ananassa HOM05D003683 ORTHO05D004143 7.1e-14 80.9 93 53.8
FvH4_7g12070 Fragaria vesca HOM05D003683 ORTHO05D004143 9.3e-14 80.5 93 53.8
FAN06G0493 Fragaria x ananassa HOM05D003683 ORTHO05D004143 9.3e-14 80.5 93 53.8
FAN06G2934 Fragaria x ananassa HOM05D003683 ORTHO05D004143 9.3e-14 80.5 93 53.8
Hund14673 Selenicereus undatus HOM05D003683 ORTHO05D004143 1.6e-13 79.7 114 49.1
Nn4g26435 Nelumbo nucifera HOM05D003683 ORTHO05D004143 2.1e-13 79.3 94 54.3
AUR62010534 Chenopodium quinoa HOM05D003683 ORTHO05D004143 2.7e-13 79.0 92 54.3
EL10Ac5g12652 Beta vulgaris HOM05D003683 ORTHO05D004143 3.5e-13 78.6 91 58.2
ECA233G3941 Erigeron canadensis HOM05D003683 ORTHO05D004143 3.5e-13 78.6 86 55.8
AUR62017361 Chenopodium quinoa HOM05D003683 ORTHO05D004143 6.0e-13 77.8 92 54.3
Hund11555 Selenicereus undatus HOM05D003683 ORTHO05D004143 6.0e-13 77.8 98 53.1
FAN10G1839 Fragaria x ananassa HOM05D003683 ORTHO05D004143 1.3e-12 76.6 93 53.8
THA.LOC104814010 Tarenaya hassleriana HOM05D003683 ORTHO05D004143 1.8e-12 76.3 93 50.5
RcHm_v2.0_Chr1g0350821 Rosa chinensis HOM05D003683 ORTHO05D004143 2.3e-12 75.9 92 54.3
Potri.014G071200 Populus trichocarpa HOM05D003683 ORTHO05D004143 3.9e-12 75.1 98 50.0
FAN01G1734 Fragaria x ananassa HOM05D003683 ORTHO05D004143 1.1e-11 73.6 93 51.6
Aqoxy7G00590 Aquilegia oxysepala HOM05D003683 ORTHO05D004143 1.5e-11 73.2 96 51.0
Cfa001703 Carpinus fangiana HOM05D003683 ORTHO05D004143 1.9e-11 72.8 99 49.5
Duzib133G0707 Durio zibethinus HOM05D003683 ORTHO05D004143 1.9e-11 72.8 102 52.9
Migut.E01009 Erythranthe guttata HOM05D003683 ORTHO05D004143 3.3e-11 72.0 96 49.0
SalBow6G6235 Salvia bowleyana HOM05D003683 ORTHO05D004143 3.3e-11 72.0 74 55.4
Cpa.g.sc29.63 Carica papaya HOM05D003683 ORTHO05D004143 5.6e-11 71.2 61 63.9
ClCG05G002130 Citrullus lanatus HOM05D003683 ORTHO05D004143 5.6e-11 71.2 67 58.2
Gohir.D11G086200 Gossypium hirsutum HOM05D003683 ORTHO05D004143 5.6e-11 71.2 82 56.1
Gohir.A11G081600 Gossypium hirsutum HOM05D003683 ORTHO05D004143 1.3e-10 70.1 82 56.1
CiPaw.01G260700 Carya illinoinensis HOM05D003683 ORTHO05D004143 1.6e-10 69.7 100 47.0
Prupe.2G147300 Prunus persica HOM05D003683 ORTHO05D004143 1.6e-10 69.7 102 48.0
Thhalv10001694m.g Eutrema salsugineum HOM05D003683 ORTHO05D004143 2.1e-10 69.3 91 49.5
HanXRQChr09g0246651 Helianthus annuus HOM05D003683 ORTHO05D004143 2.8e-10 68.9 94 46.8
Hma1.2p1_3528F.1_g336600 Hydrangea macrophylla HOM05D003683 ORTHO05D004143 4.8e-10 68.2 100 45.0
Thecc.01G374500 Theobroma cacao HOM05D003683 ORTHO05D004143 4.8e-10 68.2 99 49.5
A03p25230 Brassica napus HOM05D003683 ORTHO05D004143 8.1e-10 67.4 91 48.4
Duzib138G1197 Durio zibethinus HOM05D003683 ORTHO05D004143 8.1e-10 67.4 111 45.0
MBI04_g32262_MAGBIO Magnolia biondii HOM05D003683 ORTHO05D004143 1.1e-09 67.0 101 45.5
Potri.002G149600 Populus trichocarpa HOM05D003683 ORTHO05D004143 1.4e-09 66.6 87 52.9
COL.COLO4_12571 Corchorus olitorius HOM05D003683 ORTHO05D004143 1.8e-09 66.2 104 46.2
CARHR140640 Cardamine hirsuta HOM05D003683 ORTHO05D004143 3.1e-09 65.5 94 47.9
AL4G44620 Arabidopsis lyrata HOM05D003683 ORTHO05D004143 4.0e-09 65.1 94 48.9
BcaC01g05122 Brassica carinata HOM05D003683 ORTHO05D004143 5.3e-09 64.7 91 47.3
BcaC01g05135 Brassica carinata HOM05D003683 ORTHO05D004143 5.3e-09 64.7 91 47.3
A05p05480 Brassica napus HOM05D003683 ORTHO05D004143 5.3e-09 64.7 91 45.1
C03p30100 Brassica napus HOM05D003683 ORTHO05D004143 5.3e-09 64.7 91 47.3
BraA05t19518Z Brassica rapa HOM05D003683 ORTHO05D004143 5.3e-09 64.7 91 45.1
BcaC02g12206 Brassica carinata HOM05D003683 ORTHO05D004143 9.0e-09 63.9 91 45.1
C04p06420 Brassica napus HOM05D003683 ORTHO05D004143 9.0e-09 63.9 91 45.1
BolC4t22265H Brassica oleracea HOM05D003683 ORTHO05D004143 9.0e-09 63.9 91 45.1
Sp4g27480 Schrenkiella parvula HOM05D003683 ORTHO05D004143 9.0e-09 63.9 91 47.3
GSVIVG01027629001 Vitis vinifera HOM05D003683 ORTHO05D004143 9.0e-09 63.9 103 45.6
AT2G45450 Arabidopsis thaliana HOM05D003683 ORTHO05D004143 1.5e-08 63.2 94 46.8
BcaB02g08997 Brassica carinata HOM05D003683 ORTHO05D004143 1.5e-08 63.2 91 45.1
Gohir.A12G102100 Gossypium hirsutum HOM05D003683 ORTHO05D004143 2.0e-08 62.8 64 54.7
Lj3g0025203 Lotus japonicus HOM05D003683 ORTHO05D004143 2.0e-08 62.8 85 47.1
BcaB01g03267 Brassica carinata HOM05D003683 ORTHO05D004143 2.6e-08 62.4 91 46.2
Glyma.03G022200 Glycine max HOM05D003683 ORTHO05D004143 2.6e-08 62.4 106 44.3
MD07G1124000 Malus domestica HOM05D003683 ORTHO05D004143 2.6e-08 62.4 111 43.2
Sed0003331 Sechium edule HOM05D003683 ORTHO05D004143 2.6e-08 62.4 73 53.4
MD02G1201500 Malus domestica HOM05D003683 ORTHO05D004143 3.4e-08 62.0 113 44.2
CsaV3_3G009560 Cucumis sativus L. HOM05D003683 ORTHO05D004143 4.5e-08 61.6 82 50.0
Carub.0004s2806 Capsella rubella HOM05D003683 ORTHO05D004143 5.8e-08 61.2 86 50.0
Manes.01G264900 Manihot esculenta HOM05D003683 ORTHO05D004143 5.8e-08 61.2 77 51.9
Aa31LG1G26950 Aethionema arabicum HOM05D003683 ORTHO05D004143 7.6e-08 60.8 93 43.0
BcaB02g08986 Brassica carinata HOM05D003683 ORTHO05D004143 7.6e-08 60.8 91 44.0
BcaB06g29422 Brassica carinata HOM05D003683 ORTHO05D004143 7.6e-08 60.8 91 45.1
Glyma.18G221800 Glycine max HOM05D003683 ORTHO05D004143 7.6e-08 60.8 85 48.2
Gorai.008G114600 Gossypium raimondii HOM05D003683 ORTHO05D004143 9.9e-08 60.5 96 43.8
Carub.0005s2764 Capsella rubella HOM05D003683 ORTHO05D004143 1.3e-07 60.1 118 42.4
MELO3C006178.2 Cucumis melo HOM05D003683 ORTHO05D004143 1.7e-07 59.7 82 48.8
Hma1.2p1_1793F.1_g302590 Hydrangea macrophylla HOM05D003683 ORTHO05D004143 1.7e-07 59.7 97 42.3
Peaxi162Scf00021g00139 Petunia axillaris HOM05D003683 ORTHO05D004143 1.7e-07 59.7 100 44.0
Lalb_Chr03g0039121 Lupinus albus HOM05D003683 ORTHO05D004143 2.2e-07 59.3 91 41.8
A04p33850 Brassica napus HOM05D003683 ORTHO05D004143 2.9e-07 58.9 91 41.8
BraA04t18845Z Brassica rapa HOM05D003683 ORTHO05D004143 2.9e-07 58.9 91 41.8
CARHR171270 Cardamine hirsuta HOM05D003683 ORTHO05D004143 2.9e-07 58.9 81 46.9
BcaB02g07396 Brassica carinata HOM05D003683 ORTHO05D004143 3.8e-07 58.5 96 44.8
BcaC02g07091 Brassica carinata HOM05D003683 ORTHO05D004143 3.8e-07 58.5 91 41.8
C04p71580 Brassica napus HOM05D003683 ORTHO05D004143 3.8e-07 58.5 91 41.8
BolC4t28663H Brassica oleracea HOM05D003683 ORTHO05D004143 3.8e-07 58.5 91 41.8
ATR0810G009 Amborella trichopoda HOM05D003683 ORTHO05D004143 4.9e-07 58.2 91 41.8
Thhalv10006309m.g Eutrema salsugineum HOM05D003683 ORTHO05D004143 4.9e-07 58.2 94 40.4
Lsat_1_v5_gn_3_5041 Lactuca sativa HOM05D003683 ORTHO05D004143 4.9e-07 58.2 79 48.1
Medtr7g075120 Medicago truncatula HOM05D003683 ORTHO05D004143 4.9e-07 58.2 73 50.7
CiPaw.02G166400 Carya illinoinensis HOM05D003683 ORTHO05D004143 8.4e-07 57.4 78 47.4
BcaC02g10196 Brassica carinata HOM05D003683 ORTHO05D004143 1.1e-06 57.0 89 40.4
A04p01350 Brassica napus HOM05D003683 ORTHO05D004143 1.1e-06 57.0 90 42.2
CDE02G3545 Ceratophyllum demersum HOM05D003683 ORTHO05D004143 1.1e-06 57.0 44 68.2
Glyma.01G144700 Glycine max HOM05D003683 ORTHO05D004143 4.2e-06 55.1 76 50.0
HanXRQChr17g0557021 Helianthus annuus HOM05D003683 ORTHO05D004143 4.2e-06 55.1 43 65.1
Os09g0520500 Oryza sativa ssp. japonica HOM05D003683 ORTHO05D004143 4.2e-06 55.1 44 63.6
Phvul.010G085600 Phaseolus vulgaris HOM05D003683 ORTHO05D004143 5.5e-06 54.7 90 42.2
Sp5g02360 Schrenkiella parvula HOM05D003683 ORTHO05D004143 5.5e-06 54.7 94 38.3
Solyc01g091490.3 Solanum lycopersicum HOM05D003683 ORTHO05D004143 5.5e-06 54.7 78 50.0
AT3G60890 Arabidopsis thaliana HOM05D003683 ORTHO05D004143 7.1e-06 54.3 101 40.6
Glyma.09G268100 Glycine max HOM05D003683 ORTHO05D004143 7.1e-06 54.3 82 45.1
Gohir.D12G105300 Gossypium hirsutum HOM05D003683 ORTHO05D004143 7.1e-06 54.3 103 38.8
TWI23G1078 Tripterygium wilfordii HOM05D003683 ORTHO05D004143 7.1e-06 54.3 83 48.2


User provided reference genes

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