Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0019236 Camellia sinensis var. sinensis HOM05D001077 ORTHO05D111850 1.4e-33 145.6 70 100.0
CSS0020317 Camellia sinensis var. sinensis HOM05D001077 ORTHO05D001053 3.2e-09 64.7 37 83.8
CSS0048053 Camellia sinensis var. sinensis HOM05D001077 ORTHO05D001053 3.2e-09 64.7 37 83.8
vmacro10625 Vaccinium macrocarpon HOM05D001077 ORTHO05D001053 2.1e-08 62.0 37 78.4
Actinidia14946 Actinidia chinensis HOM05D001077 ORTHO05D001053 4.7e-08 60.8 37 75.7
Actinidia15244 Actinidia chinensis HOM05D001077 ORTHO05D001053 4.7e-08 60.8 37 75.7
Actinidia36688 Actinidia chinensis HOM05D001077 ORTHO05D001053 4.7e-08 60.8 37 75.7
Ciclev10014762m.g Citrus clementina HOM05D001077 ORTHO05D001053 4.7e-08 60.8 37 78.4
Rhsim09G0101000 Rhododendron simsii HOM05D001077 ORTHO05D001053 6.1e-08 60.5 37 75.7
Atru.chr11.375 Acer truncatum HOM05D001077 ORTHO05D001053 8.0e-08 60.1 37 75.7
ClCG05G022220 Citrullus lanatus HOM05D001077 ORTHO05D001053 8.0e-08 60.1 37 73.0
CsaV3_5G034900 Cucumis sativus L. HOM05D001077 ORTHO05D001053 1.0e-07 59.7 37 75.7
MELO3C012300.2 Cucumis melo HOM05D001077 ORTHO05D001053 2.3e-07 58.5 37 73.0
Nitab4.5_0004092g0010 Nicotiana tabacum HOM05D001077 ORTHO05D001053 4.0e-07 57.8 37 70.3
Nitab4.5_0007600g0020 Nicotiana tabacum HOM05D001077 ORTHO05D001053 4.0e-07 57.8 37 70.3
Hma1.2p1_0114F.1_g055210 Hydrangea macrophylla HOM05D001077 ORTHO05D001053 5.2e-07 57.4 37 70.3
Potri.010G115500 Populus trichocarpa HOM05D001077 ORTHO05D001053 5.2e-07 57.4 36 77.8
Sabra10G0085400 Salix brachista HOM05D001077 ORTHO05D001053 5.2e-07 57.4 36 77.8
Sabra10G0087100 Salix brachista HOM05D001077 ORTHO05D001053 5.2e-07 57.4 36 77.8
RcHm_v2.0_Chr4g0440851 Rosa chinensis HOM05D001077 ORTHO05D001053 6.7e-07 57.0 37 73.0
FvH4_4g32140 Fragaria vesca HOM05D001077 ORTHO05D001053 8.8e-07 56.6 37 73.0
FAN07G0719 Fragaria x ananassa HOM05D001077 ORTHO05D001053 8.8e-07 56.6 37 73.0
FAN12G2776 Fragaria x ananassa HOM05D001077 ORTHO05D001053 8.8e-07 56.6 37 73.0
Manes.06G061800 Manihot esculenta HOM05D001077 ORTHO05D001053 8.8e-07 56.6 37 70.3
Gorai.003G120000 Gossypium raimondii HOM05D001077 ORTHO05D001053 1.2e-06 56.2 37 70.3
Peaxi162Scf00205g00616 Petunia axillaris HOM05D001077 ORTHO05D001053 1.2e-06 56.2 37 67.6
Aa31LG4G9380 Aethionema arabicum HOM05D001077 ORTHO05D001053 1.5e-06 55.8 37 70.3
Dinv16198 Davidia involucrata HOM05D001077 ORTHO05D001053 1.5e-06 55.8 36 72.2
MD16G1031000 Malus domestica HOM05D001077 ORTHO05D001053 1.5e-06 55.8 37 70.3
AT1G71110 Arabidopsis thaliana HOM05D001077 ORTHO05D001053 2.0e-06 55.5 36 72.2
CAN.G1693.11 Capsicum annuum HOM05D001077 ORTHO05D001053 2.0e-06 55.5 37 67.6
Duzib251G0951 Durio zibethinus HOM05D001077 ORTHO05D001053 2.0e-06 55.5 37 67.6
Duzib268G0608 Durio zibethinus HOM05D001077 ORTHO05D001053 2.0e-06 55.5 37 67.6
PGR102G2066 Punica granatum HOM05D001077 ORTHO05D001053 2.0e-06 55.5 37 67.6
Solyc05g008380.4 Solanum lycopersicum HOM05D001077 ORTHO05D001053 2.0e-06 55.5 37 67.6
Sopen05g004210 Solanum pennellii HOM05D001077 ORTHO05D001053 2.0e-06 55.5 37 67.6
PGSC0003DMG400030510 Solanum tuberosum HOM05D001077 ORTHO05D001053 2.0e-06 55.5 37 67.6
Thecc.02G278200 Theobroma cacao HOM05D001077 ORTHO05D001053 2.0e-06 55.5 37 67.6
MD13G1028100 Malus domestica HOM05D001077 ORTHO05D001053 2.6e-06 55.1 37 70.3
Cc11_g09040 Coffea canephora HOM05D001077 ORTHO05D001053 3.3e-06 54.7 37 67.6
COL.COLO4_20449 Corchorus olitorius HOM05D001077 ORTHO05D001053 3.3e-06 54.7 37 67.6
DCAR_026763 Daucus carota HOM05D001077 ORTHO05D001053 3.3e-06 54.7 37 67.6
FAN22G1223 Fragaria x ananassa HOM05D001077 ORTHO05D001053 3.3e-06 54.7 37 70.3
Gohir.D03G113800 Gossypium hirsutum HOM05D001077 ORTHO05D025721 3.3e-06 54.7 37 67.6
Gohir.D11G192050 Gossypium hirsutum HOM05D001077 ORTHO05D001053 3.3e-06 54.7 37 67.6
Gorai.007G205000 Gossypium raimondii HOM05D001077 ORTHO05D001053 3.3e-06 54.7 37 67.6
BcaB03g14872 Brassica carinata HOM05D001077 ORTHO05D001053 4.4e-06 54.3 36 72.2
CANSAT01G0210 Cannabis sativa HOM05D001077 ORTHO05D001053 4.4e-06 54.3 37 67.6
Lalb_Chr10g0096301 Lupinus albus HOM05D001077 ORTHO05D001053 4.4e-06 54.3 36 72.2
Gorai.008G166100 Gossypium raimondii HOM05D001077 ORTHO05D001053 5.7e-06 53.9 37 67.6
Lj6C749T1 Lonicera japonica HOM05D001077 ORTHO05D001053 5.7e-06 53.9 37 64.9
Oeu044334.4 Olea europaea HOM05D001077 ORTHO05D001053 5.7e-06 53.9 37 64.9
CARHR064400 Cardamine hirsuta HOM05D001077 ORTHO05D001053 9.7e-06 53.1 36 66.7
Lj3A875T60 Lonicera japonica HOM05D001077 ORTHO05D001053 9.7e-06 53.1 37 64.9
Sp5g26280 Schrenkiella parvula HOM05D001077 ORTHO05D001053 9.7e-06 53.1 43 62.8
Sed0012611 Sechium edule HOM05D001077 ORTHO05D001053 9.7e-06 53.1 37 64.9


User provided reference genes

Program Settings