Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0019231 Camellia sinensis var. sinensis HOM05D004301 ORTHO05D005124 3.0e-67 258.5 138 100.0
CSS0003131 Camellia sinensis var. sinensis HOM05D004301 ORTHO05D005124 3.3e-66 255.0 138 99.3
CSS0040354 Camellia sinensis var. sinensis HOM05D004301 ORTHO05D005124 9.7e-66 253.4 138 98.6
Dinv18010 Davidia involucrata HOM05D004301 ORTHO05D005124 2.3e-59 232.3 138 89.9
Cpa.g.sc198.42 Carica papaya HOM05D004301 ORTHO05D005124 5.1e-59 231.1 138 89.1
Duzib235G0809 Durio zibethinus HOM05D004301 ORTHO05D005124 5.1e-59 231.1 138 89.1
Lj1A1229G41 Lonicera japonica HOM05D004301 ORTHO05D005124 5.1e-59 231.1 140 89.3
Ciclev10017125m.g Citrus clementina HOM05D004301 ORTHO05D005124 1.5e-58 229.6 138 88.4
vmacro03693 Vaccinium macrocarpon HOM05D004301 ORTHO05D005124 2.6e-58 228.8 139 89.9
Gohir.A06G147900 Gossypium hirsutum HOM05D004301 ORTHO05D005124 3.3e-58 228.4 138 87.7
Nitab4.5_0007007g0030 Nicotiana tabacum HOM05D004301 ORTHO05D005124 4.4e-58 228.0 139 89.2
Rhsim13G0155100 Rhododendron simsii HOM05D004301 ORTHO05D005124 7.4e-58 227.3 139 89.9
Prupe.4G022700 Prunus persica HOM05D004301 ORTHO05D005124 9.7e-58 226.9 138 87.7
Gohir.D06G153800 Gossypium hirsutum HOM05D004301 ORTHO05D005124 1.3e-57 226.5 138 87.0
Gorai.010G179800 Gossypium raimondii HOM05D004301 ORTHO05D005124 1.3e-57 226.5 138 87.0
Nitab4.5_0007482g0040 Nicotiana tabacum HOM05D004301 ORTHO05D005124 1.3e-57 226.5 139 88.5
Atru.chr10.2203 Acer truncatum HOM05D004301 ORTHO05D005124 2.2e-57 225.7 140 87.9
RcHm_v2.0_Chr5g0030661 Rosa chinensis HOM05D004301 ORTHO05D005124 2.8e-57 225.3 138 87.0
PGSC0003DMG400016459 Solanum tuberosum HOM05D004301 ORTHO05D005124 2.8e-57 225.3 139 87.8
Migut.M01306 Erythranthe guttata HOM05D004301 ORTHO05D005124 4.8e-57 224.6 140 84.3
SalBow8G0640 Salvia bowleyana HOM05D004301 ORTHO05D005124 6.3e-57 224.2 139 84.9
Thecc.06G088100 Theobroma cacao HOM05D004301 ORTHO05D005124 6.3e-57 224.2 138 86.2
Sopen02g025120 Solanum pennellii HOM05D004301 ORTHO05D005124 8.2e-57 223.8 139 87.1
Peaxi162Scf00595g00039 Petunia axillaris HOM05D004301 ORTHO05D005124 1.1e-56 223.4 140 87.1
Solyc02g080430.3 Solanum lycopersicum HOM05D004301 ORTHO05D005124 1.4e-56 223.0 139 87.1
TAR629G3276 Trochodendron aralioides HOM05D004301 ORTHO05D005124 1.4e-56 223.0 138 85.5
COL.COLO4_28865 Corchorus olitorius HOM05D004301 ORTHO05D005124 1.8e-56 222.6 138 85.5
TAR626G0955 Trochodendron aralioides HOM05D004301 ORTHO05D005124 1.8e-56 222.6 138 85.5
Rhsim08G0082200 Rhododendron simsii HOM05D004301 ORTHO05D005124 2.4e-56 222.2 139 87.8
Haze_06785 Corylus avellana HOM05D004301 ORTHO05D005124 3.1e-56 221.9 139 86.3
Cfa000237 Carpinus fangiana HOM05D004301 ORTHO05D005124 4.1e-56 221.5 139 86.3
CiPaw.09G090400 Carya illinoinensis HOM05D004301 ORTHO05D005124 5.3e-56 221.1 141 85.1
Cc00_g00410 Coffea canephora HOM05D004301 ORTHO05D005124 5.3e-56 221.1 141 85.8
THA.LOC104806300 Tarenaya hassleriana HOM05D004301 ORTHO05D005124 9.1e-56 220.3 140 85.0
Manes.03G210700 Manihot esculenta HOM05D004301 ORTHO05D005124 1.5e-55 219.5 138 86.2
CAN.G1175.8 Capsicum annuum HOM05D004301 ORTHO05D005124 2.0e-55 219.2 139 85.6
CsaV3_4G017560 Cucumis sativus L. HOM05D004301 ORTHO05D005124 2.6e-55 218.8 139 85.6
Cc03_g13960 Coffea canephora HOM05D004301 ORTHO05D005124 3.5e-55 218.4 141 84.4
MELO3C014729.2 Cucumis melo HOM05D004301 ORTHO05D005124 3.5e-55 218.4 139 84.9
FAN16G3380 Fragaria x ananassa HOM05D004301 ORTHO05D005124 5.9e-55 217.6 138 83.3
RcHm_v2.0_Chr5g0030681 Rosa chinensis HOM05D004301 ORTHO05D005124 5.9e-55 217.6 138 84.1
Lj2g0004276 Lotus japonicus HOM05D004301 ORTHO05D005124 7.7e-55 217.2 137 83.2
THA.LOC104813057 Tarenaya hassleriana HOM05D004301 ORTHO05D005124 1.0e-54 216.9 140 83.6
Potri.004G017100 Populus trichocarpa HOM05D004301 ORTHO05D005124 1.3e-54 216.5 138 84.8
QL05p073536 Quercus lobata HOM05D004301 ORTHO05D005124 1.7e-54 216.1 143 83.2
Lj5g0024394 Lotus japonicus HOM05D004301 ORTHO05D005124 2.2e-54 215.7 137 82.5
Sc05g0009100 Simmondsia chinensis HOM05D004301 ORTHO05D005124 2.2e-54 215.7 140 82.9
TWI63G1781 Tripterygium wilfordii HOM05D004301 ORTHO05D005124 2.2e-54 215.7 139 84.2
MSTRG.7223 Avicennia marina HOM05D004301 ORTHO05D005124 2.9e-54 215.3 140 82.9
Carub.0006s3270 Capsella rubella HOM05D004301 ORTHO05D005124 2.9e-54 215.3 140 82.9
CARHR252750 Cardamine hirsuta HOM05D004301 ORTHO05D005124 2.9e-54 215.3 141 82.3
QL05p073775 Quercus lobata HOM05D004301 ORTHO05D005124 3.8e-54 214.9 143 82.5
Oeu033197.1 Olea europaea HOM05D004301 ORTHO05D005124 5.0e-54 214.5 140 83.6
ATR0752G175 Amborella trichopoda HOM05D004301 ORTHO05D005124 6.5e-54 214.2 138 82.6
FvH4_3g18180 Fragaria vesca HOM05D004301 ORTHO05D005124 8.5e-54 213.8 138 82.6
Sabra04G0009400 Salix brachista HOM05D004301 ORTHO05D005124 8.5e-54 213.8 138 83.3
Sp6g04160 Schrenkiella parvula HOM05D004301 ORTHO05D005124 8.5e-54 213.8 140 81.4
SGA_v2.0_scaffold4G01921 Striga asiatica HOM05D004301 ORTHO05D005124 8.5e-54 213.8 143 79.7
AT4G04780 Arabidopsis thaliana HOM05D004301 ORTHO05D005124 1.5e-53 213.0 140 82.9
AL6G48270 Arabidopsis lyrata HOM05D004301 ORTHO05D005124 1.9e-53 212.6 140 82.1
arahy.Tifrunner.gnm1.ann1.0XE69C Arachis hypogaea HOM05D004301 ORTHO05D005124 1.9e-53 212.6 138 81.2
FAN25G1723 Fragaria x ananassa HOM05D004301 ORTHO05D005124 1.9e-53 212.6 138 81.9
arahy.Tifrunner.gnm1.ann1.210EWG Arachis hypogaea HOM05D004301 ORTHO05D005124 2.5e-53 212.2 138 81.2
Hund21400 Selenicereus undatus HOM05D004301 ORTHO05D005124 2.5e-53 212.2 139 82.7
PSO339G4464 Papaver somniferum HOM05D004301 ORTHO05D005124 4.2e-53 211.5 139 83.5
PSO384G5030 Papaver somniferum HOM05D004301 ORTHO05D005124 4.2e-53 211.5 139 83.5
Phvul.007G037700 Phaseolus vulgaris HOM05D004301 ORTHO05D005124 4.2e-53 211.5 137 81.0
arahy.Tifrunner.gnm1.ann1.6J361A Arachis hypogaea HOM05D004301 ORTHO05D005124 7.2e-53 210.7 138 80.4
Ca_26119_v3 Cicer arietinum L. HOM05D004301 ORTHO05D005124 7.2e-53 210.7 137 81.8
Manes.09G000400 Manihot esculenta HOM05D004301 ORTHO05D005124 7.2e-53 210.7 138 82.6
PGR004G0513 Punica granatum HOM05D004301 ORTHO05D005124 2.1e-52 209.1 142 80.3
TPR.G23756 Trifolium pratense HOM05D004301 ORTHO05D005124 3.6e-52 208.4 137 81.0
Psat3g175280 Pisum sativum HOM05D004301 ORTHO05D005124 4.7e-52 208.0 138 81.2
CANSAT56G0804 Cannabis sativa HOM05D004301 ORTHO05D005124 8.0e-52 207.2 141 80.1
Glyma.10G264300 Glycine max HOM05D004301 ORTHO05D005124 1.0e-51 206.8 137 80.3
ECA248G0561 Erigeron canadensis HOM05D004301 ORTHO05D005124 1.4e-51 206.5 147 76.2
A09p26100 Brassica napus HOM05D004301 ORTHO05D005124 1.8e-51 206.1 151 76.8
BraA09t38177Z Brassica rapa HOM05D004301 ORTHO05D005124 1.8e-51 206.1 151 76.8
HPP92_021475 Vanilla planifolia HOM05D004301 ORTHO05D005124 1.8e-51 206.1 138 79.7
Medtr7g037020 Medicago truncatula HOM05D004301 ORTHO05D005124 2.3e-51 205.7 137 80.3
BcaB01g01837 Brassica carinata HOM05D004301 ORTHO05D005124 6.7e-51 204.1 149 75.8
Lsat_1_v5_gn_1_128621 Lactuca sativa HOM05D004301 ORTHO05D005124 6.7e-51 204.1 164 71.3
Aqoxy3G02575 Aquilegia oxysepala HOM05D004301 ORTHO05D005124 8.8e-51 203.8 148 77.7
Oeu037360.1 Olea europaea HOM05D004301 ORTHO05D005124 7.4e-50 200.7 141 77.3
MBI16_g31789_MAGBIO Magnolia biondii HOM05D004301 ORTHO05D005124 1.7e-49 199.5 152 73.7
Aa31LG9G9690 Aethionema arabicum HOM05D004301 ORTHO05D005124 2.2e-49 199.1 140 77.9
Lalb_Chr17g0338691 Lupinus albus HOM05D004301 ORTHO05D005124 2.2e-49 199.1 138 76.1
CDE05G1190 Ceratophyllum demersum HOM05D004301 ORTHO05D005124 6.3e-49 197.6 138 76.8
BolC9t56147H Brassica oleracea HOM05D004301 ORTHO05D005124 1.8e-48 196.1 152 72.4
PSO170G5652 Papaver somniferum HOM05D004301 ORTHO05D005124 1.8e-48 196.1 139 78.4
unitig_748.g7577 Utricularia gibba HOM05D004301 ORTHO05D005124 2.4e-48 195.7 140 76.4
BcaC04g21325 Brassica carinata HOM05D004301 ORTHO05D005124 4.1e-48 194.9 155 71.0
C09p33120 Brassica napus HOM05D004301 ORTHO05D005124 4.1e-48 194.9 155 71.0
FAN12G2174 Fragaria x ananassa HOM05D004301 ORTHO05D005124 4.1e-48 194.9 144 74.3
HanXRQChr10g0285201 Helianthus annuus HOM05D004301 ORTHO05D005124 5.3e-48 194.5 160 68.1
CDE04G1315 Ceratophyllum demersum HOM05D004301 ORTHO05D005124 2.0e-47 192.6 138 74.6
FAN07G2330 Fragaria x ananassa HOM05D004301 ORTHO05D005124 2.0e-47 192.6 144 72.9
VMungo0720G3170 Vigna mungo HOM05D004301 ORTHO05D005124 2.0e-47 192.6 172 64.0
Cc00_g35050 Coffea canephora HOM05D004301 ORTHO05D005124 4.5e-47 191.4 141 75.9
DCAR_008141 Daucus carota HOM05D004301 ORTHO05D005124 4.5e-47 191.4 141 76.6
Nn7g37600 Nelumbo nucifera HOM05D004301 ORTHO05D005124 4.5e-47 191.4 112 92.9
MD10G1319700 Malus domestica HOM05D004301 ORTHO05D005124 1.0e-46 190.3 138 73.9
RcHm_v2.0_Chr4g0426811 Rosa chinensis HOM05D004301 ORTHO05D005124 1.3e-46 189.9 146 72.6
FvH4_4g21200 Fragaria vesca HOM05D004301 ORTHO05D005124 2.9e-46 188.7 148 70.9
C02p40060 Brassica napus HOM05D004301 ORTHO05D005124 8.5e-46 187.2 134 75.4
ClCG02G024420 Citrullus lanatus HOM05D005410 ORTHO05D007394 1.0e-43 180.3 113 86.7
Ah.09g234990 Amaranthus hybridus HOM05D004301 ORTHO05D005124 2.3e-43 179.1 176 59.7
BraA02t07511Z Brassica rapa HOM05D004301 ORTHO05D005124 2.3e-43 179.1 134 73.9
SEGI_29072 Sequoiadendron giganteum HOM05D004301 ORTHO05D005124 5.2e-43 177.9 136 68.4
EL10Ac8g20032 Beta vulgaris HOM05D004301 ORTHO05D005124 8.8e-43 177.2 168 61.9
AUR62012686 Chenopodium quinoa HOM05D004301 ORTHO05D005124 1.3e-41 173.3 136 70.6
arahy.Tifrunner.gnm1.ann1.RW8N71 Arachis hypogaea HOM05D004301 ORTHO05D005124 3.7e-41 171.8 114 79.8
FAN20G0317 Fragaria x ananassa HOM05D004301 ORTHO05D005124 6.3e-41 171.0 115 81.7
PSO017G1667 Papaver somniferum HOM05D004301 ORTHO05D005124 1.6e-39 166.4 113 81.4
Mapoly0013s0130 Marchantia polymorpha HOM05D004301 ORTHO05D005124 2.0e-39 166.0 138 62.3
SEGI_24906 Sequoiadendron giganteum HOM05D004301 ORTHO05D005124 5.9e-39 164.5 166 55.4
unitig_32.g11531 Utricularia gibba HOM05D004301 ORTHO05D005124 1.3e-38 163.3 119 77.3
PSO478G1674 Papaver somniferum HOM05D004301 ORTHO05D005124 3.8e-38 161.8 126 76.2
AagrBONN_evm.TU.Sc2ySwM_362.2472 Anthoceros agrestis HOM05D004301 ORTHO05D005124 6.5e-38 161.0 139 65.5
Duzib192G0451 Durio zibethinus HOM05D004301 ORTHO05D005124 5.5e-37 157.9 112 76.8
A02p25250 Brassica napus HOM05D004301 ORTHO05D005124 8.0e-36 154.1 134 65.7
BolC2t10033H Brassica oleracea HOM05D004301 ORTHO05D005124 5.2e-35 151.4 134 66.4
Pp3c1_16690 Physcomitrium patens HOM05D004301 ORTHO05D005124 5.7e-34 147.9 136 60.3
Actinidia26923 Actinidia chinensis HOM05D004301 ORTHO05D005124 3.7e-33 145.2 111 74.8
Oeu033198.1 Olea europaea HOM05D004301 ORTHO05D005124 5.4e-32 141.4 97 80.4
Prupe.1G108500 Prunus persica HOM05D004301 ORTHO05D005124 7.0e-32 141.0 131 64.1
BcaC03g16234 Brassica carinata HOM05D004301 ORTHO05D005124 2.7e-31 139.0 108 71.3
Zm00001eb173130 Zea mays HOM05D004301 ORTHO05D005124 2.7e-31 139.0 168 53.6
CDE05G0994 Ceratophyllum demersum HOM05D004301 ORTHO05D005124 1.9e-29 132.9 118 63.6
SMO200G0228 Selaginella moellendorffii HOM05D004301 ORTHO05D005124 3.3e-29 132.1 155 53.5
Gorai.005G123500 Gossypium raimondii HOM05D004301 ORTHO05D005124 5.5e-29 131.3 81 87.7
CBR_g6572 Chara braunii HOM05D004301 ORTHO05D005124 6.1e-28 127.9 135 55.6
Nitab4.5_0003254g0080 Nicotiana tabacum HOM05D004301 ORTHO05D005124 1.4e-27 126.7 80 85.0
Gohir.D09G045050 Gossypium hirsutum HOM05D004301 ORTHO05D005124 3.0e-27 125.6 80 83.8
BcaC03g16233 Brassica carinata HOM05D004301 ORTHO05D005124 4.0e-27 125.2 114 64.9
Gohir.D02G172033 Gossypium hirsutum HOM05D004301 ORTHO05D005124 4.0e-27 125.2 80 83.8
BcaB05g23708 Brassica carinata HOM05D004301 ORTHO05D005124 1.2e-26 123.6 138 54.3
Gorai.006G117000 Gossypium raimondii HOM05D004301 ORTHO05D005124 2.0e-26 122.9 77 85.7
Gohir.D10G075550 Gossypium hirsutum HOM05D004301 ORTHO05D005124 2.6e-26 122.5 76 88.2
Psat5g160160 Pisum sativum HOM05D004301 ORTHO05D005124 4.9e-25 118.2 85 77.6
Psat5g160080 Pisum sativum HOM05D004301 ORTHO05D005124 7.0e-24 114.4 85 75.3
CAN.G138.7 Capsicum annuum HOM05D004301 ORTHO05D005124 1.2e-23 113.6 141 49.6
AUR62021971 Chenopodium quinoa HOM05D004301 ORTHO05D005124 2.7e-23 112.5 69 81.2
Eucgr.G02030 Eucalyptus grandis HOM05D004301 ORTHO05D005124 5.9e-23 111.3 69 84.1
FAN21G3317 Fragaria x ananassa HOM05D004301 ORTHO05D005124 4.3e-21 105.1 69 79.7
Gorai.001G171600 Gossypium raimondii HOM05D001075 ORTHO05D001779 2.3e-19 99.4 100 60.0
Nitab4.5_0003254g0090 Nicotiana tabacum HOM05D004301 ORTHO05D005124 4.0e-19 98.6 58 89.7
Os08g0135600 Oryza sativa ssp. japonica HOM05D004301 ORTHO05D005124 1.4e-16 90.1 69 72.5
Aqoxy3G02572 Aquilegia oxysepala HOM05D004301 ORTHO05D005124 2.4e-16 89.4 57 84.2
Medtr1g107580 Medicago truncatula HOM05D004301 ORTHO05D005124 1.2e-15 87.0 70 68.6
RcHm_v2.0_Chr4g0426791 Rosa chinensis HOM05D004301 ORTHO05D005124 8.6e-14 80.9 77 59.7
MCO03G202 Micromonas commoda HOM05D004301 ORTHO05D005124 1.2e-12 77.0 130 38.5
A05p31460 Brassica napus HOM05D004301 ORTHO05D005124 1.4e-11 73.6 72 62.5
BraA05t21985Z Brassica rapa HOM05D004301 ORTHO05D005124 1.4e-11 73.6 72 62.5
SGA_v2.0_scaffold14G06848 Striga asiatica HOM05D004301 ORTHO05D005124 4.9e-09 65.1 58 60.3
C05p45830 Brassica napus HOM05D004301 ORTHO05D005124 3.2e-08 62.4 49 65.3
C05p45820 Brassica napus HOM05D004301 ORTHO05D005124 4.1e-08 62.0 51 62.7
BolC5t33302H Brassica oleracea HOM05D004301 ORTHO05D005124 7.1e-08 61.2 51 62.7
A06p38190 Brassica napus HOM05D004301 ORTHO05D005124 2.3e-06 56.2 97 44.3
BraA06t26734Z Brassica rapa HOM05D004301 ORTHO05D005124 2.3e-06 56.2 97 44.3
BcaB02g10679 Brassica carinata HOM05D004301 ORTHO05D005124 5.1e-06 55.1 44 65.9
A07p00860 Brassica napus HOM05D004301 ORTHO05D005124 5.1e-06 55.1 37 73.0
BraA07t27884Z Brassica rapa HOM05D004301 ORTHO05D005124 5.1e-06 55.1 37 73.0


User provided reference genes

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