Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0019216 Camellia sinensis var. sinensis HOM05D006030 ORTHO05D007475 1.5e-170 602.8 316 100.0
CSS0023088 Camellia sinensis var. sinensis HOM05D006030 ORTHO05D007475 1.2e-159 566.6 316 95.3
CSS0008742 Camellia sinensis var. sinensis HOM05D006030 ORTHO05D007475 3.6e-124 448.7 317 73.5
Rhsim02G0159700 Rhododendron simsii HOM05D006030 ORTHO05D007475 4.0e-123 445.3 319 75.2
Dinv21492 Davidia involucrata HOM05D006030 ORTHO05D007475 6.3e-121 438.0 318 74.8
Hma1.2p1_0689F.1_g203740 Hydrangea macrophylla HOM05D006030 ORTHO05D007475 6.3e-121 438.0 320 74.4
Actinidia39595 Actinidia chinensis HOM05D006030 ORTHO05D007475 1.3e-110 403.7 319 70.5
Peaxi162Scf00045g00235 Petunia axillaris HOM05D000253 ORTHO05D000149 8.6e-102 374.4 319 64.3
Nitab4.5_0008802g0020 Nicotiana tabacum HOM05D006030 ORTHO05D007475 1.8e-99 366.7 320 62.5
Nitab4.5_0000315g0160 Nicotiana tabacum HOM05D006030 ORTHO05D007475 3.1e-99 365.9 322 63.0
MSTRG.14783 Avicennia marina HOM05D006030 ORTHO05D007475 2.2e-97 359.8 330 61.2
TAR627G0722 Trochodendron aralioides HOM05D006030 ORTHO05D007475 2.2e-97 359.8 319 62.4
Ciclev10015995m.g Citrus clementina HOM05D006030 ORTHO05D007475 1.9e-96 356.7 318 62.3
CAN.G36.30 Capsicum annuum HOM05D006030 ORTHO05D007475 1.1e-91 340.9 318 59.7
Solyc08g023270.3 Solanum lycopersicum HOM05D006030 ORTHO05D007475 8.9e-91 337.8 318 58.5
Sopen08g008180 Solanum pennellii HOM05D006030 ORTHO05D007475 8.9e-91 337.8 318 58.5
PGSC0003DMG400005380 Solanum tuberosum HOM05D006030 ORTHO05D007475 8.9e-91 337.8 318 58.2
Atru.chr10.1031 Acer truncatum HOM05D006030 ORTHO05D007475 5.8e-90 335.1 325 58.5
MD10G1256000 Malus domestica HOM05D006030 ORTHO05D007475 1.3e-89 334.0 310 60.3
TAR624G0353 Trochodendron aralioides HOM05D006030 ORTHO05D007475 1.1e-88 330.9 310 60.6
Lj2A324T65 Lonicera japonica HOM05D006030 ORTHO05D007475 4.6e-87 325.5 321 58.6
Prupe.4G087600 Prunus persica HOM05D006030 ORTHO05D007475 7.3e-85 318.2 314 57.6
Manes.15G125900 Manihot esculenta HOM05D006030 ORTHO05D007475 1.6e-84 317.0 316 57.3
Lj1A1167T61 Lonicera japonica HOM05D006030 ORTHO05D007475 3.6e-84 315.8 308 59.4
Potri.011G091700 Populus trichocarpa HOM05D006030 ORTHO05D007475 6.2e-84 315.1 315 58.4
Peaxi162Scf00333g00215 Petunia axillaris HOM05D006030 ORTHO05D007475 8.1e-84 314.7 300 57.3
SalBow7G1462 Salvia bowleyana HOM05D006030 ORTHO05D007475 1.4e-83 313.9 335 52.8
SalBow7G3121 Salvia bowleyana HOM05D006030 ORTHO05D007475 1.4e-83 313.9 335 52.8
Cc09_g08600 Coffea canephora HOM05D006030 ORTHO05D007475 1.8e-83 313.5 323 56.7
TWI09G0666 Tripterygium wilfordii HOM05D006030 ORTHO05D007475 5.3e-83 312.0 295 57.3
Nitab4.5_0002900g0020 Nicotiana tabacum HOM05D006030 ORTHO05D007475 2.0e-82 310.1 320 54.7
Cfa000873 Carpinus fangiana HOM05D006030 ORTHO05D007475 2.2e-81 306.6 298 58.1
Migut.H01344 Erythranthe guttata HOM05D006030 ORTHO05D007475 1.4e-80 303.9 341 56.3
Nitab4.5_0000717g0050 Nicotiana tabacum HOM05D006030 ORTHO05D007475 1.9e-80 303.5 320 53.8
QL05p054330 Quercus lobata HOM05D006030 ORTHO05D007475 2.4e-80 303.1 320 56.2
MD05G1060100 Malus domestica HOM05D006030 ORTHO05D007475 2.7e-79 299.7 311 55.3
ECA236G5152 Erigeron canadensis HOM05D006030 ORTHO05D007475 4.6e-79 298.9 303 55.4
DCAR_007858 Daucus carota HOM05D006030 ORTHO05D007475 7.8e-79 298.1 301 59.1
Haze_05717 Corylus avellana HOM05D006030 ORTHO05D007475 1.0e-78 297.7 299 56.9
CiPaw.09G117700 Carya illinoinensis HOM05D006030 ORTHO05D007475 5.1e-78 295.4 320 55.6
Sabra11G0085900 Salix brachista HOM05D006030 ORTHO05D007475 1.1e-77 294.3 311 55.0
TWI53G0643 Tripterygium wilfordii HOM05D006030 ORTHO05D007475 1.5e-77 293.9 293 55.3
FAN25G1233 Fragaria x ananassa HOM05D006030 ORTHO05D007475 2.1e-76 290.0 311 55.6
FvH4_3g09520 Fragaria vesca HOM05D006030 ORTHO05D007475 4.8e-76 288.9 316 55.4
FAN16G0477 Fragaria x ananassa HOM05D006030 ORTHO05D007475 1.4e-75 287.3 316 55.4
FAN11G1717 Fragaria x ananassa HOM05D006030 ORTHO05D007475 4.0e-75 285.8 316 55.1
RcHm_v2.0_Chr5g0015101 Rosa chinensis HOM05D006030 ORTHO05D007475 5.3e-75 285.4 315 54.6
HanXRQChr04g0112111 Helianthus annuus HOM05D006030 ORTHO05D007475 2.0e-74 283.5 304 52.0
Thecc.02G010100 Theobroma cacao HOM05D006030 ORTHO05D007475 2.6e-74 283.1 300 56.0
FAN21G0577 Fragaria x ananassa HOM05D006030 ORTHO05D007475 4.5e-74 282.3 316 55.7
MSTRG.13261 Avicennia marina HOM05D006030 ORTHO05D007475 4.9e-73 278.9 331 51.7
HanXRQChr15g0481561 Helianthus annuus HOM05D006030 ORTHO05D007475 1.4e-72 277.3 304 52.3
TPR.G26249 Trifolium pratense HOM05D006030 ORTHO05D007475 3.2e-72 276.2 297 51.9
MBI18_g10587_MAGBIO Magnolia biondii HOM05D006030 ORTHO05D007475 1.2e-71 274.2 322 53.4
Aqoxy1G01654 Aquilegia oxysepala HOM05D006030 ORTHO05D007475 1.0e-70 271.2 289 53.3
Manes.17G075000 Manihot esculenta HOM05D006030 ORTHO05D007475 1.8e-70 270.4 310 51.9
Lsat_1_v5_gn_1_116040 Lactuca sativa HOM05D006030 ORTHO05D007475 7.4e-69 265.0 315 50.8
DCAR_027876 Daucus carota HOM05D006030 ORTHO05D007475 3.7e-68 262.7 298 51.7
SalBow8G3821 Salvia bowleyana HOM05D006030 ORTHO05D007475 3.7e-68 262.7 296 51.4
Lj6g0008094 Lotus japonicus HOM05D006030 ORTHO05D007475 4.8e-68 262.3 301 50.8
CANSAT35G1388 Cannabis sativa HOM05D006030 ORTHO05D007475 1.1e-67 261.2 335 48.4
CARHR252040 Cardamine hirsuta HOM05D006030 ORTHO05D007475 1.1e-67 261.2 309 47.9
Duzib132G1046 Durio zibethinus HOM05D006030 ORTHO05D007475 2.4e-67 260.0 297 53.5
Lalb_Chr20g0117731 Lupinus albus HOM05D006030 ORTHO05D007475 2.4e-67 260.0 299 50.8
Psat1g191320 Pisum sativum HOM05D006030 ORTHO05D007475 2.4e-67 260.0 290 50.0
Lalb_Chr15g0086701 Lupinus albus HOM05D006030 ORTHO05D007475 3.1e-67 259.6 296 52.0
Ca_00520_v3 Cicer arietinum L. HOM05D006030 ORTHO05D007475 4.0e-67 259.2 293 50.5
Medtr2g018890 Medicago truncatula HOM05D006030 ORTHO05D007475 4.0e-67 259.2 298 49.0
Carub.0006s3344 Capsella rubella HOM05D006030 ORTHO05D007475 5.3e-67 258.8 312 49.4
Sp6g03610 Schrenkiella parvula HOM05D006030 ORTHO05D007475 5.3e-67 258.8 310 49.7
SGA_v2.0_scaffold51G18644 Striga asiatica HOM05D006030 ORTHO05D007475 1.5e-66 257.3 292 54.5
ClCG03G006430 Citrullus lanatus HOM05D006030 ORTHO05D007475 2.6e-66 256.5 316 51.3
Lsat_1_v5_gn_7_32280 Lactuca sativa HOM05D006030 ORTHO05D007475 3.4e-66 256.1 290 52.4
Thhalv10029201m.g Eutrema salsugineum HOM05D006030 ORTHO05D007475 1.0e-65 254.6 310 49.0
MELO3C002779.2 Cucumis melo HOM05D006030 ORTHO05D007475 3.8e-65 252.7 304 49.7
Lalb_Chr18g0055221 Lupinus albus HOM05D006030 ORTHO05D007475 3.8e-65 252.7 298 50.7
Glyma.15G092100 Glycine max HOM05D006030 ORTHO05D007475 1.1e-64 251.1 302 50.0
CsaV3_1G036960 Cucumis sativus L. HOM05D006030 ORTHO05D007475 1.9e-64 250.4 303 49.5
COL.COLO4_17663 Corchorus olitorius HOM05D006030 ORTHO05D007475 4.2e-64 249.2 312 49.0
Aa31LG9G8890 Aethionema arabicum HOM05D006030 ORTHO05D007475 5.5e-64 248.8 309 47.9
Duzib052G0461 Durio zibethinus HOM05D006030 ORTHO05D007475 7.1e-64 248.4 283 53.4
Sc05g0005830 Simmondsia chinensis HOM05D006030 ORTHO05D007475 1.2e-63 247.7 297 50.8
Eucgr.E02463 Eucalyptus grandis HOM05D006030 ORTHO05D007475 6.0e-63 245.4 254 54.7
Nn4g26650 Nelumbo nucifera HOM05D006030 ORTHO05D007475 1.3e-62 244.2 293 50.2
PGR031G1516 Punica granatum HOM05D006030 ORTHO05D007475 1.3e-62 244.2 313 48.9
EL10Ac8g19610 Beta vulgaris HOM05D006030 ORTHO05D007475 2.3e-62 243.4 293 49.5
BcaB01g01909 Brassica carinata HOM05D006030 ORTHO05D007475 2.3e-62 243.4 314 48.1
AL6G49160 Arabidopsis lyrata HOM05D006030 ORTHO05D007475 3.9e-62 242.7 312 47.4
PSO541G2924 Papaver somniferum HOM05D006030 ORTHO05D007475 6.7e-62 241.9 297 51.9
Sopen02g005930 Solanum pennellii HOM05D006030 ORTHO05D007475 6.7e-62 241.9 296 49.3
Glyma.13G220300 Glycine max HOM05D006030 ORTHO05D007475 1.1e-61 241.1 304 51.0
Solyc02g021450.2 Solanum lycopersicum HOM05D006030 ORTHO05D007475 1.1e-61 241.1 296 49.0
C09p02960 Brassica napus HOM05D006030 ORTHO05D007475 1.9e-61 240.4 314 47.1
A09p02880 Brassica napus HOM05D006030 ORTHO05D007475 5.7e-61 238.8 315 47.6
AUR62030127 Chenopodium quinoa HOM05D006030 ORTHO05D007475 1.3e-60 237.7 303 48.2
AT4G03620 Arabidopsis thaliana HOM05D006030 ORTHO05D007475 1.6e-60 237.3 314 47.1
BraA09t35933Z Brassica rapa HOM05D006030 ORTHO05D007475 1.6e-60 237.3 314 46.8
Sed0012497 Sechium edule HOM05D006030 ORTHO05D007475 2.1e-60 236.9 299 48.2
Nn3g20281 Nelumbo nucifera HOM05D006030 ORTHO05D007475 2.8e-60 236.5 265 52.8
BcaC04g23958 Brassica carinata HOM05D006030 ORTHO05D007475 4.8e-60 235.7 314 46.8
BolC9t53223H Brassica oleracea HOM05D006030 ORTHO05D007475 4.8e-60 235.7 314 46.8
MBI02_g11375_MAGBIO Magnolia biondii HOM05D006030 ORTHO05D007475 4.8e-60 235.7 295 48.1
PSO541G2932 Papaver somniferum HOM05D006030 ORTHO05D007475 4.8e-60 235.7 305 48.9
DCAR_003876 Daucus carota HOM05D006030 ORTHO05D007475 6.2e-60 235.3 255 55.3
PSO675G1541 Papaver somniferum HOM05D006030 ORTHO05D007475 1.1e-59 234.6 311 50.5
VMungo0540G2189 Vigna mungo HOM05D006030 ORTHO05D007475 1.1e-59 234.6 303 46.9
Phvul.006G167100 Phaseolus vulgaris HOM05D006030 ORTHO05D007475 1.4e-59 234.2 302 46.7
AUR62002659 Chenopodium quinoa HOM05D006030 ORTHO05D007475 1.8e-59 233.8 302 47.7
PGSC0003DMG400031336 Solanum tuberosum HOM05D006030 ORTHO05D007475 4.1e-59 232.6 296 48.0
GSVIVG01021577001 Vitis vinifera HOM05D006030 ORTHO05D007475 2.2e-57 226.9 198 62.1
PSO675G3639 Papaver somniferum HOM05D006030 ORTHO05D007475 4.2e-56 222.6 305 46.9
Sed0007526 Sechium edule HOM05D006030 ORTHO05D007475 5.5e-56 222.2 297 45.8
Hund21555 Selenicereus undatus HOM05D006030 ORTHO05D007475 5.5e-56 222.2 302 46.7
THA.LOC104806979 Tarenaya hassleriana HOM05D006030 ORTHO05D007475 9.3e-56 221.5 309 46.9
arahy.Tifrunner.gnm1.ann1.Z0KP5S Arachis hypogaea HOM05D006030 ORTHO05D007475 1.1e-53 214.5 298 46.6
arahy.Tifrunner.gnm1.ann1.IB7BS1 Arachis hypogaea HOM05D006030 ORTHO05D007475 1.5e-53 214.2 298 46.6
Ah.09g232450 Amaranthus hybridus HOM05D006030 ORTHO05D007475 7.7e-50 201.8 281 44.1
arahy.Tifrunner.gnm1.ann1.TN2AI9 Arachis hypogaea HOM05D006030 ORTHO05D007475 2.1e-39 167.2 278 41.4
arahy.Tifrunner.gnm1.ann1.DKT922 Arachis hypogaea HOM05D006030 ORTHO05D007475 2.7e-39 166.8 278 41.4
Migut.M01870 Erythranthe guttata HOM05D006030 ORTHO05D007475 2.4e-35 153.7 142 60.6
HPP92_019506 Vanilla planifolia HOM05D006030 ORTHO05D007475 1.2e-34 151.4 280 38.2
ATR0626G038 Amborella trichopoda HOM05D006030 ORTHO05D007475 5.9e-34 149.1 237 41.8
Cpa.g.sc17.66 Carica papaya HOM05D006030 ORTHO05D007475 3.2e-32 143.3 164 53.0
unitig_37.g12083 Utricularia gibba HOM05D006030 ORTHO05D007475 2.6e-26 123.6 174 43.7
Peaxi162Scf00333g00214 Petunia axillaris HOM05D006030 ORTHO05D007475 7.7e-26 122.1 118 58.5
SEGI_26103 Sequoiadendron giganteum HOM05D006030 ORTHO05D007475 4.1e-19 99.8 270 31.1
Duzib248G1648 Durio zibethinus HOM05D006030 ORTHO05D007475 3.6e-15 86.7 115 49.6
Actinidia26538 Actinidia chinensis HOM05D006030 ORTHO05D007475 1.5e-13 81.3 94 50.0
Nn1g09396 Nelumbo nucifera HOM05D006030 ORTHO05D007475 4.9e-12 76.3 166 36.7
SGA_v2.0_scaffold106G30660 Striga asiatica HOM05D006030 ORTHO05D007475 5.9e-10 69.3 97 47.4


User provided reference genes

Program Settings