Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0019197 Camellia sinensis var. sinensis HOM05D003973 ORTHO05D004679 0.0e+00 1776.1 870 100.0
Actinidia12891 Actinidia chinensis HOM05D003973 ORTHO05D004679 0.0e+00 1544.3 871 87.4
Hma1.2p1_0621F.1_g190820 Hydrangea macrophylla HOM05D003973 ORTHO05D004679 0.0e+00 1434.9 874 82.0
Dinv34610 Davidia involucrata HOM05D003973 ORTHO05D004679 0.0e+00 1390.9 871 81.3
Rhsim13G0034000 Rhododendron simsii HOM05D003973 ORTHO05D004679 0.0e+00 1376.3 892 79.5
Dinv22416 Davidia involucrata HOM05D003973 ORTHO05D004679 0.0e+00 1359.0 860 80.2
Thecc.01G260300 Theobroma cacao HOM05D003973 ORTHO05D004679 0.0e+00 1332.0 871 77.5
Manes.12G031400 Manihot esculenta HOM05D003973 ORTHO05D004679 0.0e+00 1330.9 868 77.4
Cc11_g02590 Coffea canephora HOM05D003973 ORTHO05D004679 0.0e+00 1322.0 872 75.9
Ciclev10018809m.g Citrus clementina HOM05D003973 ORTHO05D004679 0.0e+00 1305.4 877 74.9
TWI12G0927 Tripterygium wilfordii HOM05D003973 ORTHO05D004679 0.0e+00 1296.6 876 74.7
Gohir.A11G129900 Gossypium hirsutum HOM05D003973 ORTHO05D004679 0.0e+00 1294.6 871 75.1
Haze_24609 Corylus avellana HOM05D003973 ORTHO05D004679 0.0e+00 1293.1 912 72.4
COL.COLO4_05173 Corchorus olitorius HOM05D003973 ORTHO05D004679 0.0e+00 1291.9 863 76.1
Gohir.D11G135600 Gossypium hirsutum HOM05D003973 ORTHO05D004679 0.0e+00 1291.6 871 75.1
Gorai.007G145200 Gossypium raimondii HOM05D003973 ORTHO05D004679 0.0e+00 1287.3 871 75.0
Atru.chr5.1648 Acer truncatum HOM05D003973 ORTHO05D004679 0.0e+00 1285.4 900 72.4
Potri.002G039900 Populus trichocarpa HOM05D003973 ORTHO05D004679 0.0e+00 1281.9 894 73.9
Cpa.g.sc50.33 Carica papaya HOM05D003973 ORTHO05D004679 0.0e+00 1280.0 870 75.2
CAN.G194.11 Capsicum annuum HOM05D003973 ORTHO05D004679 0.0e+00 1277.7 873 74.0
Nitab4.5_0000129g0340 Nicotiana tabacum HOM05D003973 ORTHO05D004679 0.0e+00 1273.1 871 74.5
CiPaw.03G262600 Carya illinoinensis HOM05D003973 ORTHO05D004679 0.0e+00 1271.9 844 75.8
PGSC0003DMG400031378 Solanum tuberosum HOM05D003973 ORTHO05D004679 0.0e+00 1271.1 878 72.9
TWI18G0068 Tripterygium wilfordii HOM05D003973 ORTHO05D004679 0.0e+00 1271.1 873 73.7
Gorai.004G072800 Gossypium raimondii HOM05D003973 ORTHO05D004679 0.0e+00 1270.8 875 75.2
Nitab4.5_0001419g0010 Nicotiana tabacum HOM05D003973 ORTHO05D004679 0.0e+00 1270.8 871 74.3
Lalb_Chr02g0152311 Lupinus albus HOM05D003973 ORTHO05D004679 0.0e+00 1266.5 872 74.3
Peaxi162Scf00329g00811 Petunia axillaris HOM05D003973 ORTHO05D004679 0.0e+00 1266.1 908 71.5
Potri.005G222800 Populus trichocarpa HOM05D003973 ORTHO05D004679 0.0e+00 1263.4 883 73.0
Sabra02G0032000 Salix brachista HOM05D003973 ORTHO05D004679 0.0e+00 1262.3 883 73.7
TWI75G1776 Tripterygium wilfordii HOM05D003973 ORTHO05D004679 0.0e+00 1261.5 836 76.0
Duzib138G0375 Durio zibethinus HOM05D003973 ORTHO05D004679 0.0e+00 1261.1 871 73.7
TAR362G0234 Trochodendron aralioides HOM05D003973 ORTHO05D004679 0.0e+00 1259.6 873 74.7
Lalb_Chr06g0170381 Lupinus albus HOM05D003973 ORTHO05D004679 0.0e+00 1259.2 872 73.4
MD05G1199600 Malus domestica HOM05D003973 ORTHO05D004679 0.0e+00 1258.0 891 72.2
Solyc04g008630.3 Solanum lycopersicum HOM05D003973 ORTHO05D004679 0.0e+00 1253.8 909 70.5
Sopen04g003790 Solanum pennellii HOM05D003973 ORTHO05D004679 0.0e+00 1252.3 909 70.5
Glyma.13G122200 Glycine max HOM05D003973 ORTHO05D004679 0.0e+00 1251.9 873 72.9
Sabra05G0171500 Salix brachista HOM05D003973 ORTHO05D004679 0.0e+00 1251.9 908 71.0
MSTRG.18316 Avicennia marina HOM05D003973 ORTHO05D004679 0.0e+00 1251.5 871 72.8
Nn4g22928 Nelumbo nucifera HOM05D003973 ORTHO05D004679 0.0e+00 1251.5 874 72.8
Oeu026512.1 Olea europaea HOM05D003973 ORTHO05D004679 0.0e+00 1250.0 876 72.8
MD10G1185900 Malus domestica HOM05D003973 ORTHO05D004679 0.0e+00 1249.2 890 71.8
Glyma.10G035800 Glycine max HOM05D003973 ORTHO05D004679 0.0e+00 1248.4 871 72.7
VMungo1383G0117 Vigna mungo HOM05D003973 ORTHO05D004679 0.0e+00 1245.0 865 73.6
Gohir.D08G207800 Gossypium hirsutum HOM05D003973 ORTHO05D004679 0.0e+00 1243.8 875 72.2
QL09p038243 Quercus lobata HOM05D003973 ORTHO05D004679 0.0e+00 1240.3 868 72.8
arahy.Tifrunner.gnm1.ann1.M1CRL2 Arachis hypogaea HOM05D003973 ORTHO05D004679 0.0e+00 1238.8 876 72.0
TAR633G0700 Trochodendron aralioides HOM05D003973 ORTHO05D004679 0.0e+00 1238.0 857 74.0
Medtr1g070160 Medicago truncatula HOM05D003973 ORTHO05D004679 0.0e+00 1234.9 872 72.2
Lj1g0003934 Lotus japonicus HOM05D003973 ORTHO05D004679 0.0e+00 1234.6 868 72.6
Phvul.001G159900 Phaseolus vulgaris HOM05D003973 ORTHO05D004679 0.0e+00 1230.7 866 73.0
RcHm_v2.0_Chr6g0288391 Rosa chinensis HOM05D003973 ORTHO05D004679 0.0e+00 1229.5 892 71.4
Ca_09689_v3 Cicer arietinum L. HOM05D003973 ORTHO05D004679 0.0e+00 1229.2 891 71.4
SalBow4G2825 Salvia bowleyana HOM05D003973 ORTHO05D004679 0.0e+00 1228.4 908 70.2
CANSAT01G0525 Cannabis sativa HOM05D003973 ORTHO05D004679 0.0e+00 1226.1 882 71.5
Prupe.8G225400 Prunus persica HOM05D003973 ORTHO05D004679 0.0e+00 1225.7 882 71.5
ECA247G3763 Erigeron canadensis HOM05D003973 ORTHO05D004679 0.0e+00 1225.3 864 72.8
arahy.Tifrunner.gnm1.ann1.0L9E2L Arachis hypogaea HOM05D003973 ORTHO05D004679 0.0e+00 1224.9 899 70.4
Lj5g0017930 Lotus japonicus HOM05D003973 ORTHO05D004679 0.0e+00 1224.9 871 71.9
TPR.G16308 Trifolium pratense HOM05D003973 ORTHO05D004679 0.0e+00 1224.2 871 72.0
Glyma.03G162100 Glycine max HOM05D003973 ORTHO05D004679 0.0e+00 1222.2 881 71.7
Medtr7g096680 Medicago truncatula HOM05D003973 ORTHO05D004679 0.0e+00 1221.8 899 69.6
Lsat_1_v5_gn_9_8721 Lactuca sativa HOM05D003973 ORTHO05D004679 0.0e+00 1218.0 869 71.9
HanXRQChr10g0281061 Helianthus annuus HOM05D003973 ORTHO05D004679 0.0e+00 1212.2 862 71.3
Eucgr.B01536 Eucalyptus grandis HOM05D003973 ORTHO05D004679 0.0e+00 1211.8 874 71.1
GSVIVG01028304001 Vitis vinifera HOM05D003973 ORTHO05D004679 0.0e+00 1209.9 877 71.2
TPR.G3551 Trifolium pratense HOM05D003973 ORTHO05D004679 0.0e+00 1209.5 871 71.5
Glyma.19G163500 Glycine max HOM05D003973 ORTHO05D004679 0.0e+00 1205.7 880 70.9
DCAR_005697 Daucus carota HOM05D003973 ORTHO05D004679 0.0e+00 1204.9 868 71.8
DCAR_000939 Daucus carota HOM05D003973 ORTHO05D004679 0.0e+00 1203.3 915 68.6
Duzib133G1136 Durio zibethinus HOM05D003973 ORTHO05D004679 0.0e+00 1203.0 870 70.9
FAN27G0583 Fragaria x ananassa HOM05D003973 ORTHO05D004679 0.0e+00 1201.4 894 69.6
FvH4_2g21710 Fragaria vesca HOM05D003973 ORTHO05D004679 0.0e+00 1196.4 894 69.6
Psat3g058480 Pisum sativum HOM05D003973 ORTHO05D004679 0.0e+00 1195.6 944 65.8
Duzib211G0218 Durio zibethinus HOM05D003973 ORTHO05D004679 0.0e+00 1192.2 873 71.0
HanXRQChr15g0467921 Helianthus annuus HOM05D003973 ORTHO05D004679 0.0e+00 1189.5 867 70.2
FAN24G2194 Fragaria x ananassa HOM05D003973 ORTHO05D004679 0.0e+00 1188.7 917 68.0
FAN20G1573 Fragaria x ananassa HOM05D003973 ORTHO05D004679 0.0e+00 1180.2 894 69.0
FAN15G1892 Fragaria x ananassa HOM05D003973 ORTHO05D004679 0.0e+00 1179.9 918 67.4
Migut.D00414 Erythranthe guttata HOM05D003973 ORTHO05D004679 0.0e+00 1177.2 878 69.9
Oeu039681.1 Olea europaea HOM05D003973 ORTHO05D004679 0.0e+00 1175.6 874 70.3
Lj2A1153G48 Lonicera japonica HOM05D003973 ORTHO05D004679 0.0e+00 1173.3 873 70.4
PGR044G1639 Punica granatum HOM05D003973 ORTHO05D004679 0.0e+00 1171.4 908 68.0
MBI17_g07970_MAGBIO Magnolia biondii HOM05D003973 ORTHO05D004679 0.0e+00 1168.7 864 70.0
arahy.Tifrunner.gnm1.ann1.61T5XF Arachis hypogaea HOM05D003973 ORTHO05D004679 0.0e+00 1165.2 870 69.4
arahy.Tifrunner.gnm1.ann1.B4WKJK Arachis hypogaea HOM05D003973 ORTHO05D004679 0.0e+00 1163.3 870 69.5
THA.LOC104800875 Tarenaya hassleriana HOM05D003973 ORTHO05D004679 0.0e+00 1152.5 884 68.2
Gohir.A08G060000 Gossypium hirsutum HOM05D003973 ORTHO05D004679 0.0e+00 1150.2 868 69.8
ClCG07G000970 Citrullus lanatus HOM05D003973 ORTHO05D004679 0.0e+00 1144.8 882 67.1
MELO3C012904.2 Cucumis melo HOM05D003973 ORTHO05D004679 0.0e+00 1144.8 882 67.1
Sed0025131 Sechium edule HOM05D003973 ORTHO05D004679 0.0e+00 1144.8 881 67.1
Aqoxy1G00848 Aquilegia oxysepala HOM05D003973 ORTHO05D004679 0.0e+00 1142.9 859 68.7
CsaV3_3G022520 Cucumis sativus L. HOM05D003973 ORTHO05D004679 0.0e+00 1142.5 889 66.5
Gohir.D08G069200 Gossypium hirsutum HOM05D003973 ORTHO05D004679 0.0e+00 1136.3 875 68.9
Gorai.004G220200 Gossypium raimondii HOM05D003973 ORTHO05D004679 0.0e+00 1135.6 759 75.4
vmacro02653 Vaccinium macrocarpon HOM05D003973 ORTHO05D004679 0.0e+00 1135.2 838 72.6
THA.LOC104826212 Tarenaya hassleriana HOM05D003973 ORTHO05D004679 0.0e+00 1134.0 889 66.6
Sed0015853 Sechium edule HOM05D003973 ORTHO05D004679 0.0e+00 1131.3 879 66.7
Gohir.A08G189300 Gossypium hirsutum HOM05D003973 ORTHO05D004679 0.0e+00 1125.9 871 67.0
Lj1A65T50 Lonicera japonica HOM05D003973 ORTHO05D004679 0.0e+00 1124.4 836 70.1
Carub.0004s1253 Capsella rubella HOM05D003973 ORTHO05D004679 0.0e+00 1119.4 872 67.1
Ah.11g049650 Amaranthus hybridus HOM05D003973 ORTHO05D004679 0.0e+00 1117.4 891 64.8
AL4G26480 Arabidopsis lyrata HOM05D003973 ORTHO05D004679 0.0e+00 1117.4 880 66.7
Thhalv10016226m.g Eutrema salsugineum HOM05D003973 ORTHO05D004679 0.0e+00 1115.1 886 66.6
PSO063G1318 Papaver somniferum HOM05D003973 ORTHO05D004679 0.0e+00 1108.2 863 65.8
AT2G31260 Arabidopsis thaliana HOM05D003973 ORTHO05D004679 0.0e+00 1104.0 884 66.3
PSO782G1372 Papaver somniferum HOM05D003973 ORTHO05D004679 0.0e+00 1100.1 870 64.8
Sp4g13740 Schrenkiella parvula HOM05D003973 ORTHO05D004679 0.0e+00 1099.7 881 65.4
CARHR124850 Cardamine hirsuta HOM05D003973 ORTHO05D004679 0.0e+00 1093.6 879 65.6
EL10Ac5g10415 Beta vulgaris HOM05D003973 ORTHO05D004679 0.0e+00 1092.8 947 60.4
SGA_v2.0_scaffold138G35249 Striga asiatica HOM05D003973 ORTHO05D004679 0.0e+00 1090.1 873 64.9
BolC4t27568H Brassica oleracea HOM05D003973 ORTHO05D004679 0.0e+00 1087.4 882 64.9
BcaB06g28520 Brassica carinata HOM05D003973 ORTHO05D004679 0.0e+00 1083.9 882 64.7
BcaB02g10369 Brassica carinata HOM05D003973 ORTHO05D004679 0.0e+00 1083.6 889 65.1
C04p60770 Brassica napus HOM05D003973 ORTHO05D004679 0.0e+00 1081.2 885 65.0
A04p24090 Brassica napus HOM05D003973 ORTHO05D004679 0.0e+00 1078.5 879 65.3
Oeu058816.4 Olea europaea HOM05D003973 ORTHO05D004679 0.0e+00 1076.2 963 60.5
Phvul.007G194300 Phaseolus vulgaris HOM05D003973 ORTHO05D004679 0.0e+00 1075.1 888 63.9
BcaB06g28436 Brassica carinata HOM05D003973 ORTHO05D004679 5.0e-309 1064.3 895 63.4
BraA04t17928Z Brassica rapa HOM05D003973 ORTHO05D004679 2.5e-308 1062.0 812 67.5
HanXRQChr08g0217761 Helianthus annuus HOM05D003973 ORTHO05D004679 4.2e-308 1061.2 864 63.2
Aa31LG5G5690 Aethionema arabicum HOM05D003973 ORTHO05D004679 6.1e-307 1057.4 808 66.8
Psat6g055320 Pisum sativum HOM05D003973 ORTHO05D004679 1.7e-304 1049.3 915 63.7
Hund09596 Selenicereus undatus HOM05D003973 ORTHO05D004679 8.5e-301 1036.9 885 63.3
unitig_0.g154 Utricularia gibba HOM05D003973 ORTHO05D004679 6.1e-291 1004.2 877 60.9
Nn3g17035 Nelumbo nucifera HOM05D003973 ORTHO05D004679 1.4e-290 1003.0 600 82.2
AUR62024730 Chenopodium quinoa HOM05D003973 ORTHO05D004679 1.8e-290 1002.7 901 59.3
AUR62011889 Chenopodium quinoa HOM05D003973 ORTHO05D004679 3.8e-285 984.9 899 58.3
Sc17g0000740 Simmondsia chinensis HOM05D003973 ORTHO05D004679 4.4e-281 971.5 588 80.3
ATR0680G230 Amborella trichopoda HOM05D003973 ORTHO05D004679 2.3e-269 932.6 823 59.2
ECA236G2624 Erigeron canadensis HOM05D003973 ORTHO05D004679 5.0e-269 931.4 864 57.6
SHI09836 Sapria himalayana HOM05D003973 ORTHO05D004679 7.0e-263 911.0 904 56.5
Os03g0248000 Oryza sativa ssp. japonica HOM05D003973 ORTHO05D004679 3.7e-256 888.6 867 53.7
ATR0559G363 Amborella trichopoda HOM05D003973 ORTHO05D004679 7.1e-255 884.4 810 56.7
HPP92_008425 Vanilla planifolia HOM05D003973 ORTHO05D004679 9.2e-255 884.0 807 57.0
Os10g0163100 Oryza sativa ssp. japonica HOM05D003973 ORTHO05D004679 1.6e-246 856.7 819 54.3
Zm00001eb010620 Zea mays HOM05D003973 ORTHO05D004679 4.3e-244 848.6 866 52.7
SEGI_30090 Sequoiadendron giganteum HOM05D003973 ORTHO05D004679 8.9e-242 840.9 819 55.1
Ah.02g111890 Amaranthus hybridus HOM05D003973 ORTHO05D004679 2.9e-240 835.9 801 56.6
CiPaw.04G185700 Carya illinoinensis HOM05D003973 ORTHO05D004679 3.4e-233 812.4 576 71.7
HPP92_008421 Vanilla planifolia HOM05D003973 ORTHO05D004679 7.6e-233 811.2 607 65.9
SMO239G0162 Selaginella moellendorffii HOM05D003973 ORTHO05D004679 2.5e-212 743.0 572 62.6
Mapoly0002s0148 Marchantia polymorpha HOM05D003973 ORTHO05D004679 2.2e-208 729.9 855 45.4
Pp3c10_9800 Physcomitrium patens HOM05D003973 ORTHO05D004679 9.7e-204 714.5 856 44.6
Pp3c2_1820 Physcomitrium patens HOM05D003973 ORTHO05D004679 1.6e-198 697.2 856 43.9
BraA05t20372Z Brassica rapa HOM05D003973 ORTHO05D004679 1.7e-195 687.2 634 59.5
unitig_60.g25752 Utricularia gibba HOM05D003973 ORTHO05D004679 4.1e-194 682.6 880 45.1
A05p14440 Brassica napus HOM05D003973 ORTHO05D004679 3.8e-192 676.0 634 58.7
CBR_g24398 Chara braunii HOM05D003973 ORTHO05D004679 7.7e-185 651.7 665 50.4
VMungo0720G0690 Vigna mungo HOM05D003973 ORTHO05D004679 3.1e-178 629.8 590 57.3
MBI18_g15332_MAGBIO Magnolia biondii HOM05D003973 ORTHO05D004679 1.4e-146 524.6 516 55.2
AagrBONN_evm.TU.Sc2ySwM_117.1675 Anthoceros agrestis HOM05D003973 ORTHO05D004679 4.3e-143 513.1 585 46.2
AUR62024729 Chenopodium quinoa HOM05D003973 ORTHO05D004679 4.7e-142 509.6 436 61.7
MCO05G121 Micromonas commoda HOM05D003973 ORTHO05D004679 6.9e-117 426.0 609 38.9
CDE02G3928 Ceratophyllum demersum HOM05D003973 ORTHO05D004679 3.2e-114 417.2 511 46.2
CDE06G1379 Ceratophyllum demersum HOM05D003973 ORTHO05D004679 8.1e-110 402.5 474 49.4
BcaB06g28438 Brassica carinata HOM05D003973 ORTHO05D004679 5.5e-106 389.8 401 56.1
BolC4t23456H Brassica oleracea HOM05D003973 ORTHO05D004679 1.2e-97 362.1 264 67.0
Cre09.g391500 Chlamydomonas reinhardtii HOM05D003973 ORTHO05D004679 1.1e-93 349.0 691 32.0
CDE06G1301 Ceratophyllum demersum HOM05D003973 ORTHO05D004679 7.4e-87 326.2 225 68.9
C04p19230 Brassica napus HOM05D003973 ORTHO05D004679 2.3e-80 304.7 264 59.1
BcaC02g11207 Brassica carinata HOM05D003973 ORTHO05D004679 5.2e-72 276.9 175 74.9
Cfa025050 Carpinus fangiana HOM05D003973 ORTHO05D004679 2.0e-63 248.4 520 28.8
Hund02908 Selenicereus undatus HOM05D003973 ORTHO05D004679 3.5e-60 237.7 157 73.9
PRCOL_00006952 Prasinoderma coloniale HOM05D003973 ORTHO05D004679 6.5e-59 233.4 496 30.2
Psat2g015440 Pisum sativum HOM05D003973 ORTHO05D004679 5.4e-37 160.6 198 50.0
Sc17g0000730 Simmondsia chinensis HOM05D003973 ORTHO05D004679 3.1e-32 144.8 369 30.9
CSS0024912 Camellia sinensis var. sinensis HOM05D003973 ORTHO05D004679 2.3e-24 118.6 74 83.8
VMungo0720G0978 Vigna mungo HOM05D003973 ORTHO05D435101 9.9e-23 113.2 177 41.2
AagrBONN_evm.TU.Sc2ySwM_344.134 Anthoceros agrestis HOM05D003973 ORTHO05D004679 4.1e-21 107.8 74 64.9
BcaB06g28437 Brassica carinata HOM05D003973 ORTHO05D004679 2.7e-20 105.1 376 28.5
Hund02909 Selenicereus undatus HOM05D003973 ORTHO05D004679 1.5e-18 99.4 119 50.4
VMungo0251G0786 Vigna mungo HOM05D003973 ORTHO05D432747 2.2e-14 85.5 52 73.1


User provided reference genes

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