Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0019153 Camellia sinensis var. sinensis HOM05D001091 ORTHO05D015841 2.1e-67 258.8 126 100.0
vmacro04051 Vaccinium macrocarpon HOM05D001091 ORTHO05D001020 8.9e-42 173.7 116 71.6
Hma1.2p1_0101F.1_g049670 Hydrangea macrophylla HOM05D001091 ORTHO05D001020 9.8e-41 170.2 116 72.4
Lj2C949G1 Lonicera japonica HOM05D001091 ORTHO05D001020 2.9e-40 168.7 117 72.6
Rhsim13G0198100 Rhododendron simsii HOM05D001091 ORTHO05D001020 4.9e-40 167.9 117 71.8
Duzib150G0688 Durio zibethinus HOM05D001091 ORTHO05D001020 7.8e-38 160.6 113 65.5
Atru.chr3.3075 Acer truncatum HOM05D001091 ORTHO05D001020 2.3e-37 159.1 98 74.5
Atru.chr3.3090 Acer truncatum HOM05D001091 ORTHO05D009271 2.3e-37 159.1 98 74.5
COL.COLO4_00161 Corchorus olitorius HOM05D001091 ORTHO05D001020 3.9e-37 158.3 116 64.7
CSS0046714 Camellia sinensis var. sinensis HOM05D001091 ORTHO05D015841 2.5e-36 155.6 117 68.4
Thecc.09G267800 Theobroma cacao HOM05D001091 ORTHO05D001020 2.5e-36 155.6 118 63.6
Duzib168G0067 Durio zibethinus HOM05D001091 ORTHO05D001020 4.7e-35 151.4 113 63.7
GSVIVG01037531001 Vitis vinifera HOM05D001091 ORTHO05D001020 1.8e-34 149.4 116 62.9
Gorai.006G117900 Gossypium raimondii HOM05D001091 ORTHO05D001020 4.0e-34 148.3 123 61.0
PGR119G1581 Punica granatum HOM05D001091 ORTHO05D001020 4.0e-34 148.3 116 61.2
Sabra16G0128400 Salix brachista HOM05D001091 ORTHO05D001020 4.0e-34 148.3 107 62.6
TWI79G0355 Tripterygium wilfordii HOM05D001091 ORTHO05D001020 4.0e-34 148.3 120 62.5
Manes.11G103600 Manihot esculenta HOM05D001091 ORTHO05D001020 5.2e-34 147.9 115 61.7
Potri.001G214800 Populus trichocarpa HOM05D001091 ORTHO05D001020 5.2e-34 147.9 109 60.6
Gohir.D09G100500 Gossypium hirsutum HOM05D001091 ORTHO05D001020 1.2e-33 146.7 122 60.7
Ciclev10027791m.g Citrus clementina HOM05D001091 ORTHO05D001020 1.5e-33 146.4 123 61.0
Gohir.A09G101100 Gossypium hirsutum HOM05D001091 ORTHO05D001020 1.5e-33 146.4 123 60.2
TWI31G0595 Tripterygium wilfordii HOM05D001091 ORTHO05D001020 1.5e-33 146.4 119 60.5
MD11G1174900 Malus domestica HOM05D001091 ORTHO05D001020 2.0e-33 146.0 109 62.4
Nitab4.5_0000875g0120 Nicotiana tabacum HOM05D001091 ORTHO05D001020 4.4e-33 144.8 117 61.5
Lj3g0006295 Lotus japonicus HOM05D001091 ORTHO05D001020 5.8e-33 144.4 116 59.5
MELO3C014526.2 Cucumis melo HOM05D001091 ORTHO05D001020 1.3e-32 143.3 109 63.3
ClCG02G022500 Citrullus lanatus HOM05D001091 ORTHO05D001020 1.7e-32 142.9 109 63.3
CsaV3_6G038640 Cucumis sativus L. HOM05D001091 ORTHO05D001020 1.7e-32 142.9 109 64.2
THA.LOC104810942 Tarenaya hassleriana HOM05D001091 ORTHO05D001020 2.9e-32 142.1 116 61.2
vmacro22680 Vaccinium macrocarpon HOM05D001091 ORTHO05D015841 2.9e-32 142.1 91 70.3
MD03G1159600 Malus domestica HOM05D001091 ORTHO05D001020 3.7e-32 141.7 109 61.5
TAR633G1177 Trochodendron aralioides HOM05D001091 ORTHO05D001020 4.9e-32 141.4 116 63.8
CAN.G1463.15 Capsicum annuum HOM05D001091 ORTHO05D001020 1.1e-31 140.2 118 60.2
Glyma.12G190400 Glycine max HOM05D001091 ORTHO05D001020 1.1e-31 140.2 116 60.3
Nitab4.5_0003657g0030 Nicotiana tabacum HOM05D001091 ORTHO05D001020 1.1e-31 140.2 117 59.8
Prupe.6G147300 Prunus persica HOM05D001091 ORTHO05D001020 1.4e-31 139.8 109 58.7
FAN11G0955 Fragaria x ananassa HOM05D001091 ORTHO05D001020 4.1e-31 138.3 117 60.7
FAN16G2369 Fragaria x ananassa HOM05D001091 ORTHO05D001020 4.1e-31 138.3 110 60.0
Phvul.005G117700 Phaseolus vulgaris HOM05D001091 ORTHO05D001020 5.4e-31 137.9 116 61.2
EL10Ac7g16275 Beta vulgaris HOM05D001091 ORTHO05D001020 9.2e-31 137.1 109 60.6
FAN21G3893 Fragaria x ananassa HOM05D001091 ORTHO05D001020 9.2e-31 137.1 117 58.1
arahy.Tifrunner.gnm1.ann1.KRDC8H Arachis hypogaea HOM05D001091 ORTHO05D001020 1.2e-30 136.7 102 64.7
arahy.Tifrunner.gnm1.ann1.ZKTD7I Arachis hypogaea HOM05D001091 ORTHO05D001020 1.2e-30 136.7 102 64.7
Cfa010206 Carpinus fangiana HOM05D001091 ORTHO05D001020 1.2e-30 136.7 116 58.6
Solyc06g073930.4 Solanum lycopersicum HOM05D001091 ORTHO05D001020 1.2e-30 136.7 117 60.7
Sopen06g030330 Solanum pennellii HOM05D001091 ORTHO05D001020 1.2e-30 136.7 117 60.7
THA.LOC104799571 Tarenaya hassleriana HOM05D001091 ORTHO05D001020 1.2e-30 136.7 116 60.3
Glyma.13G311300 Glycine max HOM05D001091 ORTHO05D001020 1.6e-30 136.3 109 61.5
RcHm_v2.0_Chr5g0049121 Rosa chinensis HOM05D001091 ORTHO05D001020 1.6e-30 136.3 110 60.0
Sed0022355 Sechium edule HOM05D001091 ORTHO05D001020 2.1e-30 136.0 116 58.6
FvH4_3g26140 Fragaria vesca HOM05D001091 ORTHO05D001020 2.7e-30 135.6 117 59.8
AT5G22030 Arabidopsis thaliana HOM05D001091 ORTHO05D001020 3.5e-30 135.2 115 59.1
Peaxi162Scf00098g00113 Petunia axillaris HOM05D001091 ORTHO05D001020 3.5e-30 135.2 118 57.6
VMungo1080G0672 Vigna mungo HOM05D001091 ORTHO05D001020 4.6e-30 134.8 116 59.5
Thhalv10012650m.g Eutrema salsugineum HOM05D001091 ORTHO05D001020 6.0e-30 134.4 116 59.5
Dinv18857 Davidia involucrata HOM05D001091 ORTHO05D001020 7.8e-30 134.0 116 60.3
FAN25G1894 Fragaria x ananassa HOM05D001091 ORTHO05D001020 7.8e-30 134.0 117 57.3
AL6G32990 Arabidopsis lyrata HOM05D001091 ORTHO05D001020 1.3e-29 133.3 116 58.6
Sp6g23160 Schrenkiella parvula HOM05D001091 ORTHO05D001020 1.3e-29 133.3 113 59.3
TPR.G4164 Trifolium pratense HOM05D001091 ORTHO05D001020 3.9e-29 131.7 116 60.3
AUR62001573 Chenopodium quinoa HOM05D001091 ORTHO05D001020 5.1e-29 131.3 113 60.2
QL01p019208 Quercus lobata HOM05D001091 ORTHO05D015841 8.6e-29 130.6 124 53.2
BcaB08g36457 Brassica carinata HOM05D001091 ORTHO05D001020 1.1e-28 130.2 111 57.7
DCAR_006189 Daucus carota HOM05D001091 ORTHO05D001020 1.1e-28 130.2 104 59.6
Hund18804 Selenicereus undatus HOM05D001091 ORTHO05D001020 1.5e-28 129.8 112 56.2
BolC9t58330H Brassica oleracea HOM05D001091 ORTHO05D001020 1.9e-28 129.4 112 58.0
Carub.0006s1967 Capsella rubella HOM05D001091 ORTHO05D001020 2.5e-28 129.0 116 57.8
CARHR191500 Cardamine hirsuta HOM05D001091 ORTHO05D001020 2.5e-28 129.0 116 56.9
CiPaw.13G126800 Carya illinoinensis HOM05D001091 ORTHO05D001020 3.3e-28 128.6 117 54.7
BraA10t43951Z Brassica rapa HOM05D001091 ORTHO05D001020 4.3e-28 128.3 112 57.1
arahy.Tifrunner.gnm1.ann1.RIT83U Arachis hypogaea HOM05D001091 ORTHO05D001020 1.2e-27 126.7 110 56.4
arahy.Tifrunner.gnm1.ann1.X1RCBJ Arachis hypogaea HOM05D001091 ORTHO05D001020 1.6e-27 126.3 110 56.4
AUR62020212 Chenopodium quinoa HOM05D001091 ORTHO05D001020 1.6e-27 126.3 113 57.5
Ca_01624_v3 Cicer arietinum L. HOM05D001091 ORTHO05D001020 1.6e-27 126.3 109 59.6
Eucgr.J00586 Eucalyptus grandis HOM05D001091 ORTHO05D001020 1.6e-27 126.3 119 54.6
Lalb_Chr19g0136151 Lupinus albus HOM05D001091 ORTHO05D001020 1.6e-27 126.3 95 64.2
BcaC04g19537 Brassica carinata HOM05D001091 ORTHO05D015841 2.1e-27 125.9 111 57.7
C09p54650 Brassica napus HOM05D001091 ORTHO05D001020 2.1e-27 125.9 111 57.7
Sc21g0006730 Simmondsia chinensis HOM05D001091 ORTHO05D001020 2.1e-27 125.9 123 56.1
Lalb_Chr01g0005811 Lupinus albus HOM05D001091 ORTHO05D001020 3.6e-27 125.2 112 58.0
Medtr2g087710 Medicago truncatula HOM05D001091 ORTHO05D001020 3.6e-27 125.2 116 55.2
A10p18710 Brassica napus HOM05D001091 ORTHO05D001020 4.7e-27 124.8 111 56.8
Nn6g34617 Nelumbo nucifera HOM05D001091 ORTHO05D001020 4.7e-27 124.8 116 59.5
Psat5g262560 Pisum sativum HOM05D001091 ORTHO05D001020 1.1e-26 123.6 109 57.8
Ah.08g222100 Amaranthus hybridus HOM05D001091 ORTHO05D001020 1.4e-26 123.2 95 61.1
MSTRG.18797 Avicennia marina HOM05D001091 ORTHO05D001020 1.4e-26 123.2 99 56.6
MSTRG.21007 Avicennia marina HOM05D001091 ORTHO05D001020 1.4e-26 123.2 98 56.1
C03p12130 Brassica napus HOM05D001091 ORTHO05D001020 3.1e-26 122.1 113 56.6
Cc01_g07850 Coffea canephora HOM05D001091 ORTHO05D001020 6.8e-26 120.9 112 54.5
TAR636G1693 Trochodendron aralioides HOM05D001091 ORTHO05D001020 8.9e-26 120.6 88 67.0
Aqoxy1G00611 Aquilegia oxysepala HOM05D001091 ORTHO05D001020 1.2e-25 120.2 112 56.2
A03p10540 Brassica napus HOM05D001091 ORTHO05D001020 1.2e-25 120.2 113 56.6
BraA03t10366Z Brassica rapa HOM05D001091 ORTHO05D001020 1.2e-25 120.2 113 56.6
Aa31LG1G13370 Aethionema arabicum HOM05D001091 ORTHO05D001020 5.8e-25 117.9 115 53.0
SHI25267 Sapria himalayana HOM05D001091 ORTHO05D001020 5.8e-25 117.9 112 51.8
BolC3t13686H Brassica oleracea HOM05D001091 ORTHO05D001020 7.6e-25 117.5 114 56.1
SGA_v2.0_scaffold7G04006 Striga asiatica HOM05D001091 ORTHO05D001020 9.9e-25 117.1 99 59.6
Cpa.g.sc103.29 Carica papaya HOM05D001091 ORTHO05D015841 2.2e-24 115.9 95 58.9
Migut.D02381 Erythranthe guttata HOM05D001091 ORTHO05D001020 4.9e-24 114.8 95 54.7
unitig_899.g15383 Utricularia gibba HOM05D001091 ORTHO05D015841 6.4e-24 114.4 113 49.6
Oeu048823.1 Olea europaea HOM05D001091 ORTHO05D001020 3.2e-23 112.1 96 59.4
Lsat_1_v5_gn_2_35221 Lactuca sativa HOM05D001091 ORTHO05D001020 4.2e-23 111.7 124 48.4
PSO339G5290 Papaver somniferum HOM05D001091 ORTHO05D001020 1.2e-22 110.2 113 53.1
PSO384G3742 Papaver somniferum HOM05D001091 ORTHO05D001020 1.2e-22 110.2 113 53.1
BcaNung07296 Brassica carinata HOM05D001091 ORTHO05D001020 1.0e-21 107.1 119 51.3
BcaB01g04748 Brassica carinata HOM05D001091 ORTHO05D001020 5.1e-21 104.8 116 52.6
CDE10G0151 Ceratophyllum demersum HOM05D001091 ORTHO05D001020 5.1e-21 104.8 93 54.8
SalBow6G2883 Salvia bowleyana HOM05D001091 ORTHO05D001020 1.5e-20 103.2 98 51.0
HPP92_028256 Vanilla planifolia HOM05D001091 ORTHO05D001020 1.9e-20 102.8 119 50.4
Haze_23594 Corylus avellana HOM05D001091 ORTHO05D001020 7.3e-20 100.9 172 37.8
CDE10G1029 Ceratophyllum demersum HOM05D001091 ORTHO05D001020 3.6e-19 98.6 93 52.7
BcaC01g06610 Brassica carinata HOM05D001091 ORTHO05D001020 4.8e-19 98.2 87 57.5
HanXRQChr17g0561191 Helianthus annuus HOM05D001091 ORTHO05D001020 3.4e-17 92.0 118 48.3
MBI05_g36783_MAGBIO Magnolia biondii HOM05D001091 ORTHO05D001020 7.6e-17 90.9 95 50.5
Thhalv10027354m.g Eutrema salsugineum HOM05D001091 ORTHO05D015841 1.3e-16 90.1 89 49.4
GSVIVG01022581001 Vitis vinifera HOM05D001091 ORTHO05D015841 1.2e-14 83.6 94 47.9
ATR0697G235 Amborella trichopoda HOM05D001091 ORTHO05D001020 2.1e-14 82.8 116 43.1
arahy.Tifrunner.gnm1.ann1.6V7NNJ Arachis hypogaea HOM05D001091 ORTHO05D001020 1.5e-12 76.6 94 44.7
arahy.Tifrunner.gnm1.ann1.UW76F4 Arachis hypogaea HOM05D001091 ORTHO05D001020 4.3e-12 75.1 94 43.6
ECA238G3615 Erigeron canadensis HOM05D001091 ORTHO05D001020 4.8e-11 71.6 135 38.5
Atru.chr8.1306 Acer truncatum HOM05D001091 ORTHO05D001020 1.4e-10 70.1 97 41.2
Cfa020062 Carpinus fangiana HOM05D001091 ORTHO05D001020 1.8e-10 69.7 99 40.4
Haze_20136 Corylus avellana HOM05D001091 ORTHO05D001020 2.4e-10 69.3 92 41.3
QL07p027131 Quercus lobata HOM05D001091 ORTHO05D001020 2.4e-10 69.3 98 40.8
Ca_09067_v3 Cicer arietinum L. HOM05D001091 ORTHO05D001020 5.3e-10 68.2 94 40.4
Lj1g0016178 Lotus japonicus HOM05D001091 ORTHO05D001020 5.3e-10 68.2 95 42.1
TPR.G25811 Trifolium pratense HOM05D001091 ORTHO05D001020 6.9e-10 67.8 93 38.7
RcHm_v2.0_Chr3g0476581 Rosa chinensis HOM05D001091 ORTHO05D001020 1.5e-09 66.6 106 37.7
Thecc.05G108000 Theobroma cacao HOM05D001091 ORTHO05D001020 2.0e-09 66.2 96 42.7
vmacro07507 Vaccinium macrocarpon HOM05D001091 ORTHO05D001020 4.5e-09 65.1 117 34.2
COL.COLO4_29522 Corchorus olitorius HOM05D001091 ORTHO05D001020 7.6e-09 64.3 97 40.2
Potri.006G201100 Populus trichocarpa HOM05D001091 ORTHO05D001020 7.6e-09 64.3 95 34.7
VMungo1383G3391 Vigna mungo HOM05D001091 ORTHO05D001020 7.6e-09 64.3 93 37.6
Hund10841 Selenicereus undatus HOM05D001091 ORTHO05D001020 9.9e-09 63.9 92 41.3
Phvul.001G197200 Phaseolus vulgaris HOM05D001091 ORTHO05D001020 1.3e-08 63.5 93 36.6
FAN09G4836 Fragaria x ananassa HOM05D001091 ORTHO05D001020 1.7e-08 63.2 99 36.4
Gohir.D09G129200 Gossypium hirsutum HOM05D001091 ORTHO05D001020 2.2e-08 62.8 93 41.9
Gorai.006G147900 Gossypium raimondii HOM05D001091 ORTHO05D001020 2.2e-08 62.8 93 41.9
MD12G1043100 Malus domestica HOM05D001091 ORTHO05D001020 2.2e-08 62.8 110 36.4
MELO3C009559.2 Cucumis melo HOM05D001091 ORTHO05D001020 2.9e-08 62.4 98 38.8
CsaV3_3G038160 Cucumis sativus L. HOM05D001091 ORTHO05D001020 2.9e-08 62.4 98 38.8
Gohir.A09G132900 Gossypium hirsutum HOM05D001091 ORTHO05D001020 2.9e-08 62.4 93 41.9
MD14G1042200 Malus domestica HOM05D001091 ORTHO05D001020 2.9e-08 62.4 110 35.5
Medtr7g106570 Medicago truncatula HOM05D001091 ORTHO05D001020 3.8e-08 62.0 92 37.0
Glyma.03G203700 Glycine max HOM05D001091 ORTHO05D001020 4.9e-08 61.6 93 34.4
Sed0027161 Sechium edule HOM05D001091 ORTHO05D001020 4.9e-08 61.6 93 37.6
Ciclev10012460m.g Citrus clementina HOM05D001091 ORTHO05D001020 6.4e-08 61.2 101 38.6
FAN14G4036 Fragaria x ananassa HOM05D001091 ORTHO05D001020 6.4e-08 61.2 99 35.4
ClCG10G018140 Citrullus lanatus HOM05D001091 ORTHO05D001020 1.1e-07 60.5 95 35.8
Duzib128G1052 Durio zibethinus HOM05D001091 ORTHO05D001020 1.1e-07 60.5 113 35.4
FAN02G3563 Fragaria x ananassa HOM05D001091 ORTHO05D001020 1.1e-07 60.5 91 35.2
ECA233G5061 Erigeron canadensis HOM05D001091 ORTHO05D001020 1.4e-07 60.1 109 30.3
FAN05G4225 Fragaria x ananassa HOM05D001091 ORTHO05D001020 1.4e-07 60.1 99 35.4
FAN05G5163 Fragaria x ananassa HOM05D001091 ORTHO05D001020 1.4e-07 60.1 99 35.4
Glyma.19G201100 Glycine max HOM05D001091 ORTHO05D001020 1.9e-07 59.7 93 33.3
Lalb_Chr20g0111281 Lupinus albus HOM05D001091 ORTHO05D001020 4.2e-07 58.5 93 36.6
Manes.09G043300 Manihot esculenta HOM05D001091 ORTHO05D001020 4.2e-07 58.5 111 34.2
Sabra06G0154800 Salix brachista HOM05D001091 ORTHO05D001020 4.2e-07 58.5 111 31.5
Lalb_Chr01g0017791 Lupinus albus HOM05D001091 ORTHO05D001020 9.3e-07 57.4 92 34.8
ATR0585G129 Amborella trichopoda HOM05D001091 ORTHO05D015841 2.7e-06 55.8 85 36.5
CSS0002029 Camellia sinensis var. sinensis HOM05D001091 ORTHO05D001020 3.5e-06 55.5 106 36.8
CSS0017286 Camellia sinensis var. sinensis HOM05D001091 ORTHO05D001020 3.5e-06 55.5 106 36.8
Prupe.7G091700 Prunus persica HOM05D001091 ORTHO05D001020 3.5e-06 55.5 107 33.6
Lalb_Chr25g0287901 Lupinus albus HOM05D001091 ORTHO05D001020 4.6e-06 55.1 92 35.9


User provided reference genes

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