Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0019133 Camellia sinensis var. sinensis HOM05D006379 ORTHO05D007830 1.5e-39 165.6 77 100.0
Zm00001eb217230 Zea mays HOM05D006379 ORTHO05D007830 1.4e-08 62.8 38 73.7
Medtr4g098490 Medicago truncatula HOM05D006379 ORTHO05D007830 3.0e-08 61.6 39 69.2
arahy.Tifrunner.gnm1.ann1.QRW6GR Arachis hypogaea HOM05D006379 ORTHO05D007830 6.7e-08 60.5 26 100.0
Cfa012418 Carpinus fangiana HOM05D006379 ORTHO05D007830 6.7e-08 60.5 26 100.0
CiPaw.12G062300 Carya illinoinensis HOM05D006379 ORTHO05D007830 6.7e-08 60.5 26 100.0
Cc08_g02510 Coffea canephora HOM05D006379 ORTHO05D007830 6.7e-08 60.5 26 100.0
Haze_08258 Corylus avellana HOM05D006379 ORTHO05D007830 6.7e-08 60.5 26 100.0
Glyma.05G112100 Glycine max HOM05D006379 ORTHO05D007830 6.7e-08 60.5 26 100.0
Glyma.17G154900 Glycine max HOM05D006379 ORTHO05D007830 6.7e-08 60.5 26 100.0
Lj4g0008037 Lotus japonicus HOM05D006379 ORTHO05D007830 6.7e-08 60.5 26 100.0
Os03g0685000 Oryza sativa ssp. japonica HOM05D006379 ORTHO05D007830 6.7e-08 60.5 26 100.0
Phvul.003G230200 Phaseolus vulgaris HOM05D006379 ORTHO05D007830 6.7e-08 60.5 26 100.0
QL12p006043 Quercus lobata HOM05D006379 ORTHO05D007830 6.7e-08 60.5 26 100.0
Hund14407 Selenicereus undatus HOM05D006379 ORTHO05D007830 6.7e-08 60.5 26 100.0
TPR.G29030 Trifolium pratense HOM05D006379 ORTHO05D007830 6.7e-08 60.5 26 100.0
HPP92_013491 Vanilla planifolia HOM05D006379 ORTHO05D007830 6.7e-08 60.5 26 100.0
HPP92_026045 Vanilla planifolia HOM05D006379 ORTHO05D007830 6.7e-08 60.5 26 100.0
VMungo0251G0261 Vigna mungo HOM05D000740 ORTHO05D005071 6.7e-08 60.5 26 100.0
Atru.chr6.1742 Acer truncatum HOM05D006379 ORTHO05D007830 8.8e-08 60.1 26 96.2
Actinidia09219 Actinidia chinensis HOM05D006379 ORTHO05D007830 8.8e-08 60.1 26 96.2
Aa31LG2G13410 Aethionema arabicum HOM05D006379 ORTHO05D007830 8.8e-08 60.1 26 96.2
Ah.12g054900 Amaranthus hybridus HOM05D006379 ORTHO05D007830 8.8e-08 60.1 26 96.2
ATR0796G077 Amborella trichopoda HOM05D006379 ORTHO05D007830 8.8e-08 60.1 26 96.2
Aqoxy5G02873 Aquilegia oxysepala HOM05D006379 ORTHO05D007830 8.8e-08 60.1 26 96.2
AL1G46800 Arabidopsis lyrata HOM05D006379 ORTHO05D007830 8.8e-08 60.1 26 96.2
AL1G48020 Arabidopsis lyrata HOM05D006379 ORTHO05D007830 8.8e-08 60.1 26 96.2
AT1G32550 Arabidopsis thaliana HOM05D006379 ORTHO05D007830 8.8e-08 60.1 26 96.2
BcaB07g32954 Brassica carinata HOM05D006379 ORTHO05D007830 8.8e-08 60.1 26 96.2
BcaC07g37588 Brassica carinata HOM05D006379 ORTHO05D007830 8.8e-08 60.1 26 96.2
A08p09010 Brassica napus HOM05D006379 ORTHO05D007830 8.8e-08 60.1 26 96.2
A09p33660 Brassica napus HOM05D006379 ORTHO05D007830 8.8e-08 60.1 26 96.2
BolC8t47934H Brassica oleracea HOM05D006379 ORTHO05D007830 8.8e-08 60.1 26 96.2
BraA08t32902Z Brassica rapa HOM05D006379 ORTHO05D007830 8.8e-08 60.1 26 96.2
BraA09t38912Z Brassica rapa HOM05D006379 ORTHO05D007830 8.8e-08 60.1 26 96.2
Carub.0001s3096 Capsella rubella HOM05D006379 ORTHO05D007830 8.8e-08 60.1 26 96.2
CARHR032000 Cardamine hirsuta HOM05D006379 ORTHO05D007830 8.8e-08 60.1 26 96.2
Cpa.g.sc71.69 Carica papaya HOM05D006379 ORTHO05D007830 8.8e-08 60.1 26 96.2
CsaV3_3G049310 Cucumis sativus L. HOM05D006379 ORTHO05D007830 8.8e-08 60.1 26 96.2
DCAR_024971 Daucus carota HOM05D006379 ORTHO05D007830 8.8e-08 60.1 26 96.2
Dinv25202 Davidia involucrata HOM05D006379 ORTHO05D007830 8.8e-08 60.1 26 96.2
Dinv28941 Davidia involucrata HOM05D006379 ORTHO05D007830 8.8e-08 60.1 26 96.2
Duzib205G0717 Durio zibethinus HOM05D006379 ORTHO05D007830 8.8e-08 60.1 26 96.2
ECA240G2404 Erigeron canadensis HOM05D006379 ORTHO05D007830 8.8e-08 60.1 26 96.2
Migut.A01031 Erythranthe guttata HOM05D006379 ORTHO05D007830 8.8e-08 60.1 26 96.2
Thhalv10008887m.g Eutrema salsugineum HOM05D006379 ORTHO05D007830 8.8e-08 60.1 26 96.2
HanXRQChr02g0043511 Helianthus annuus HOM05D006379 ORTHO05D007830 8.8e-08 60.1 26 96.2
Hma1.2p1_0991F.1_g245020 Hydrangea macrophylla HOM05D006379 ORTHO05D007830 8.8e-08 60.1 26 96.2
Lj2A242T73 Lonicera japonica HOM05D006379 ORTHO05D007830 8.8e-08 60.1 26 96.2
MD16G1276600 Malus domestica HOM05D006379 ORTHO05D007830 8.8e-08 60.1 26 96.2
Manes.15G169000 Manihot esculenta HOM05D006379 ORTHO05D007830 8.8e-08 60.1 26 96.2
Nn4g25240 Nelumbo nucifera HOM05D006379 ORTHO05D007830 8.8e-08 60.1 26 96.2
Nitab4.5_0002373g0030 Nicotiana tabacum HOM05D006379 ORTHO05D007830 8.8e-08 60.1 26 96.2
Potri.003G090400 Populus trichocarpa HOM05D006379 ORTHO05D007830 8.8e-08 60.1 26 96.2
Prupe.5G039500 Prunus persica HOM05D006379 ORTHO05D007830 8.8e-08 60.1 26 96.2
PGR004G2142 Punica granatum HOM05D006379 ORTHO05D007830 8.8e-08 60.1 26 96.2
Sabra03G0060200 Salix brachista HOM05D006379 ORTHO05D007830 8.8e-08 60.1 26 96.2
SalBow6G2021 Salvia bowleyana HOM05D006379 ORTHO05D007830 8.8e-08 60.1 26 96.2
Sp1g28350 Schrenkiella parvula HOM05D006379 ORTHO05D007830 8.8e-08 60.1 26 96.2
Sed0015821 Sechium edule HOM05D006379 ORTHO05D007830 8.8e-08 60.1 26 96.2
Sed0017672 Sechium edule HOM05D006379 ORTHO05D007830 8.8e-08 60.1 26 96.2
SEGI_19144 Sequoiadendron giganteum HOM05D006379 ORTHO05D007830 8.8e-08 60.1 26 96.2
Solyc08g077050.3 Solanum lycopersicum HOM05D006379 ORTHO05D007830 8.8e-08 60.1 26 96.2
Sopen08g025630 Solanum pennellii HOM05D006379 ORTHO05D007830 8.8e-08 60.1 26 96.2
PGSC0003DMG400017532 Solanum tuberosum HOM05D006379 ORTHO05D007830 8.8e-08 60.1 26 96.2
SGA_v2.0_scaffold104G30206 Striga asiatica HOM05D006379 ORTHO05D007830 8.8e-08 60.1 26 96.2
THA.LOC104814439 Tarenaya hassleriana HOM05D006379 ORTHO05D007830 8.8e-08 60.1 26 96.2
TWI81G0344 Tripterygium wilfordii HOM05D006379 ORTHO05D007830 8.8e-08 60.1 26 96.2
unitig_744.g24478 Utricularia gibba HOM05D006379 ORTHO05D007830 8.8e-08 60.1 26 96.2
vmacro14164 Vaccinium macrocarpon HOM05D006379 ORTHO05D007830 8.8e-08 60.1 26 96.2
GSVIVG01013191001 Vitis vinifera HOM05D006379 ORTHO05D007830 8.8e-08 60.1 26 96.2
MSTRG.12139 Avicennia marina HOM05D006379 ORTHO05D007830 1.5e-07 59.3 26 96.2
Ca_22070_v3 Cicer arietinum L. HOM05D006379 ORTHO05D007830 1.5e-07 59.3 26 96.2
Ciclev10032819m.g Citrus clementina HOM05D006379 ORTHO05D007830 1.5e-07 59.3 26 96.2
Duzib084G0654 Durio zibethinus HOM05D006379 ORTHO05D007830 1.5e-07 59.3 26 92.3
PSO170G4107 Papaver somniferum HOM05D006379 ORTHO05D007830 1.5e-07 59.3 26 96.2
PSO357G0477 Papaver somniferum HOM05D006379 ORTHO05D007830 1.5e-07 59.3 26 96.2
Sc07g0008750 Simmondsia chinensis HOM05D006379 ORTHO05D007830 1.5e-07 59.3 26 96.2
CANSAT21G0322 Cannabis sativa HOM05D006379 ORTHO05D007830 2.0e-07 58.9 26 92.3
CAN.G1659.5 Capsicum annuum HOM05D006379 ORTHO05D007830 2.0e-07 58.9 26 92.3
AUR62007269 Chenopodium quinoa HOM05D006379 ORTHO05D007830 2.0e-07 58.9 26 92.3
FvH4_5g21760 Fragaria vesca HOM05D006379 ORTHO05D007830 2.0e-07 58.9 26 92.3
FAN13G0612 Fragaria x ananassa HOM05D006379 ORTHO05D007830 2.0e-07 58.9 26 92.3
FAN18G2446 Fragaria x ananassa HOM05D006379 ORTHO05D007830 2.0e-07 58.9 26 92.3
Gohir.A12G209000 Gossypium hirsutum HOM05D006379 ORTHO05D007830 2.0e-07 58.9 26 92.3
Gohir.D12G211700 Gossypium hirsutum HOM05D006379 ORTHO05D007830 2.0e-07 58.9 26 92.3
Gorai.008G227300 Gossypium raimondii HOM05D006379 ORTHO05D007830 2.0e-07 58.9 26 92.3
MD06G1032600 Malus domestica HOM05D006379 ORTHO05D007830 2.0e-07 58.9 26 92.3
Mapoly0177s0016 Marchantia polymorpha HOM05D006379 ORTHO05D007830 2.0e-07 58.9 26 96.2
RcHm_v2.0_Chr7g0209251 Rosa chinensis HOM05D006379 ORTHO05D007830 2.0e-07 58.9 26 92.3
Thecc.03G229900 Theobroma cacao HOM05D006379 ORTHO05D007830 2.0e-07 58.9 26 92.3
TAR362G0922 Trochodendron aralioides HOM05D006379 ORTHO05D007830 2.0e-07 58.9 26 92.3
COL.COLO4_17063 Corchorus olitorius HOM05D006379 ORTHO05D007830 2.6e-07 58.5 26 92.3
MBI18_g03873_MAGBIO Magnolia biondii HOM05D006379 ORTHO05D007830 2.6e-07 58.5 26 96.2
SMO134G0248 Selaginella moellendorffii HOM05D006379 ORTHO05D007830 2.6e-07 58.5 25 100.0
C05p32020 Brassica napus HOM05D006379 ORTHO05D007830 4.4e-07 57.8 26 92.3
BolC5t31928H Brassica oleracea HOM05D006379 ORTHO05D007830 4.4e-07 57.8 26 92.3
Eucgr.E00291 Eucalyptus grandis HOM05D006379 ORTHO05D007830 4.4e-07 57.8 26 88.5
Lalb_Chr05g0220541 Lupinus albus HOM05D006379 ORTHO05D007830 4.4e-07 57.8 26 92.3
AagrBONN_evm.TU.Sc2ySwM_228.4201 Anthoceros agrestis HOM05D006379 ORTHO05D007830 5.7e-07 57.4 26 92.3
FAN04G0985 Fragaria x ananassa HOM05D006379 ORTHO05D007830 5.7e-07 57.4 26 88.5
Psat4g078880 Pisum sativum HOM05D006379 ORTHO05D007830 5.7e-07 57.4 26 96.2
BcaB04g17950 Brassica carinata HOM05D006379 ORTHO05D007830 9.7e-07 56.6 26 92.3


User provided reference genes

Program Settings