Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0019085 Camellia sinensis var. sinensis HOM05D041308 ORTHO05D005895 3.4e-228 794.7 404 100.0
CSS0039023 Camellia sinensis var. sinensis HOM05D041308 ORTHO05D005895 2.2e-190 669.1 435 82.5
CSS0014816 Camellia sinensis var. sinensis HOM05D041308 ORTHO05D005895 4.8e-190 667.9 438 82.0
Actinidia25244 Actinidia chinensis HOM05D006920 ORTHO05D005895 3.7e-81 306.2 427 48.7
vmacro17256 Vaccinium macrocarpon HOM05D006920 ORTHO05D005895 1.6e-71 274.2 443 45.4
Rhsim05G0018400 Rhododendron simsii HOM05D006920 ORTHO05D005895 5.2e-67 259.2 402 46.5
Hma1.2p1_0169F.1_g074930 Hydrangea macrophylla HOM05D006920 ORTHO05D005895 1.8e-43 181.0 426 36.9
TAR383G0297 Trochodendron aralioides HOM05D006920 ORTHO05D005895 1.1e-35 155.2 441 33.3
Dinv42334 Davidia involucrata HOM05D006920 ORTHO05D005895 1.9e-32 144.4 308 40.3
Hma1.2p1_0476F.1_g160830 Hydrangea macrophylla HOM05D006920 ORTHO05D005895 1.1e-24 118.6 300 37.0
Dinv36779 Davidia involucrata HOM05D006920 ORTHO05D005895 3.1e-19 100.5 226 35.8
Haze_25928 Corylus avellana HOM05D006920 ORTHO05D005895 6.8e-19 99.4 481 27.9
Potri.006G148400 Populus trichocarpa HOM05D006920 ORTHO05D005895 8.9e-19 99.0 351 30.5
Cfa003067 Carpinus fangiana HOM05D006920 ORTHO05D005895 1.2e-18 98.6 524 26.1
COL.COLO4_18185 Corchorus olitorius HOM05D006920 ORTHO05D005895 2.2e-17 94.4 406 27.3
Prupe.7G207100 Prunus persica HOM05D006920 ORTHO05D005895 8.4e-17 92.4 486 26.3
Atru.chr7.1617 Acer truncatum HOM05D006920 ORTHO05D005895 1.1e-16 92.0 452 29.0
Ciclev10007413m.g Citrus clementina HOM05D006920 ORTHO05D005895 1.9e-16 91.3 434 28.6
MSTRG.19500 Avicennia marina HOM05D006920 ORTHO05D005895 2.1e-15 87.8 438 25.8
CANSAT56G3092 Cannabis sativa HOM05D006920 ORTHO05D005895 2.1e-15 87.8 463 26.6
CiPaw.03G213600 Carya illinoinensis HOM05D006920 ORTHO05D005895 6.6e-14 82.8 554 25.6
TWI63G0676 Tripterygium wilfordii HOM05D006920 ORTHO05D005895 1.5e-13 81.6 399 29.6
arahy.Tifrunner.gnm1.ann1.50MPSE Arachis hypogaea HOM05D006920 ORTHO05D005895 2.5e-13 80.9 306 30.4
Cc06_g11560 Coffea canephora HOM05D006920 ORTHO05D005895 1.6e-12 78.2 430 28.1
Sabra06G0117400 Salix brachista HOM05D006920 ORTHO05D005895 3.6e-12 77.0 257 31.1
GSVIVG01015184001 Vitis vinifera HOM05D006920 ORTHO05D005895 3.6e-12 77.0 186 36.6
Nitab4.5_0008077g0010 Nicotiana tabacum HOM05D006920 ORTHO05D005895 5.3e-11 73.2 432 24.8
Migut.J00581 Erythranthe guttata HOM05D006920 ORTHO05D005895 4.4e-10 70.1 305 26.2
Nitab4.5_0005104g0050 Nicotiana tabacum HOM05D006920 ORTHO05D005895 4.4e-10 70.1 353 28.3
Duzib150G1610 Durio zibethinus HOM05D006920 ORTHO05D005895 1.7e-09 68.2 378 25.7
Dinv42333 Davidia involucrata HOM05D006920 ORTHO05D005895 4.9e-09 66.6 51 60.8
Thecc.09G086800 Theobroma cacao HOM05D006920 ORTHO05D005895 8.4e-09 65.9 382 26.4
QL02p062309 Quercus lobata HOM05D006920 ORTHO05D005895 1.4e-08 65.1 549 23.9
Oeu064585.1 Olea europaea HOM05D006920 ORTHO05D005895 1.9e-08 64.7 113 39.8
Cpa.g.sc28.161 Carica papaya HOM05D006920 ORTHO05D005895 5.4e-08 63.2 221 29.4
Nn6g35509 Nelumbo nucifera HOM05D006920 ORTHO05D005895 5.4e-08 63.2 301 27.9
SGA_v2.0_scaffold4G02308 Striga asiatica HOM05D006920 ORTHO05D005895 1.6e-07 61.6 322 27.6
Gorai.009G032200 Gossypium raimondii HOM05D006920 ORTHO05D005895 2.1e-07 61.2 313 25.6
SalBow6G1737 Salvia bowleyana HOM05D006920 ORTHO05D005895 2.1e-07 61.2 279 25.8
MD15G1209300 Malus domestica HOM05D006920 ORTHO05D005895 3.5e-07 60.5 429 25.2
FAN28G2753 Fragaria x ananassa HOM05D006920 ORTHO05D005895 7.8e-07 59.3 480 24.4
PGSC0003DMG400014565 Solanum tuberosum HOM05D006920 ORTHO05D005895 7.8e-07 59.3 425 24.2
Gohir.D05G032000 Gossypium hirsutum HOM05D006920 ORTHO05D005895 1.0e-06 58.9 334 24.0
Hma1.2p1_1540F.1_g289660 Hydrangea macrophylla HOM05D006920 ORTHO05D005895 2.3e-06 57.8 75 53.3
Peaxi162Scf00028g00415 Petunia axillaris HOM05D006920 ORTHO05D005895 3.0e-06 57.4 340 25.9
FAN26G1238 Fragaria x ananassa HOM05D006920 ORTHO05D005895 3.9e-06 57.0 480 24.2
Sopen05g005130 Solanum pennellii HOM05D006920 ORTHO05D005895 3.9e-06 57.0 416 23.8
FAN23G0431 Fragaria x ananassa HOM05D006920 ORTHO05D005895 5.1e-06 56.6 267 27.7
RcHm_v2.0_Chr2g0093651 Rosa chinensis HOM05D006920 ORTHO05D005895 5.1e-06 56.6 481 23.3
FvH4_1g07770 Fragaria vesca HOM05D006920 ORTHO05D005895 6.6e-06 56.2 267 27.3
Gohir.A05G030600 Gossypium hirsutum HOM05D006920 ORTHO05D005895 8.7e-06 55.8 333 23.7


User provided reference genes

Program Settings