Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0019079 Camellia sinensis var. sinensis HOM05D001964 ORTHO05D001879 9.6e-86 320.5 205 100.0
CSS0045698 Camellia sinensis var. sinensis HOM05D001964 ORTHO05D001879 1.9e-54 216.5 199 75.9
Actinidia16442 Actinidia chinensis HOM05D001964 ORTHO05D001879 4.8e-21 105.5 239 38.1
Actinidia21235 Actinidia chinensis HOM05D001964 ORTHO05D001879 1.1e-20 104.4 239 41.4
CSS0027858 Camellia sinensis var. sinensis HOM05D001964 ORTHO05D001879 2.3e-18 96.7 243 44.0
Actinidia32823 Actinidia chinensis HOM05D001964 ORTHO05D001879 6.5e-18 95.1 239 38.1
Dinv26903 Davidia involucrata HOM05D001964 ORTHO05D001879 6.5e-18 95.1 257 36.2
CSS0030213 Camellia sinensis var. sinensis HOM05D001964 ORTHO05D001879 1.1e-17 94.4 243 43.2
vmacro17990 Vaccinium macrocarpon HOM05D001964 ORTHO05D001879 4.9e-13 79.0 223 31.8
Hma1.2p1_1377F.1_g279100 Hydrangea macrophylla HOM05D001964 ORTHO05D001879 1.8e-12 77.0 204 34.8
Dinv30067 Davidia involucrata HOM05D001964 ORTHO05D001879 3.5e-11 72.8 267 35.2
FvH4_1g17230 Fragaria vesca HOM05D001964 ORTHO05D001879 5.0e-10 68.9 45 66.7
FAN19G0344 Fragaria x ananassa HOM05D001964 ORTHO05D001879 5.0e-10 68.9 45 66.7
FAN26G0310 Fragaria x ananassa HOM05D001964 ORTHO05D001879 5.0e-10 68.9 45 66.7
Nn1g04618 Nelumbo nucifera HOM05D001964 ORTHO05D001879 6.6e-10 68.6 49 69.4
FAN28G0877 Fragaria x ananassa HOM05D001964 ORTHO05D001879 8.6e-10 68.2 45 66.7
Ciclev10025613m.g Citrus clementina HOM05D001964 ORTHO05D001879 1.1e-09 67.8 44 75.0
Hma1.2p1_0923F.1_g236960 Hydrangea macrophylla HOM05D001964 ORTHO05D001879 1.9e-09 67.0 64 53.1
Rhsim08G0095400 Rhododendron simsii HOM05D001964 ORTHO05D001879 1.9e-09 67.0 209 40.2
TWI09G0477 Tripterygium wilfordii HOM05D001964 ORTHO05D001879 1.9e-09 67.0 45 66.7
RcHm_v2.0_Chr2g0107421 Rosa chinensis HOM05D001964 ORTHO05D001879 4.3e-09 65.9 45 66.7
GSVIVG01000151001 Vitis vinifera HOM05D001964 ORTHO05D001879 5.6e-09 65.5 44 68.2
Actinidia38096 Actinidia chinensis HOM05D001964 ORTHO05D001879 9.5e-09 64.7 42 66.7
Eucgr.F00120 Eucalyptus grandis HOM05D001964 ORTHO05D001879 9.5e-09 64.7 46 67.4
Oeu040595.1 Olea europaea HOM05D001964 ORTHO05D001879 9.5e-09 64.7 45 71.1
HanXRQChr12g0376931 Helianthus annuus HOM05D001964 ORTHO05D001879 1.6e-08 63.9 48 60.4
Oeu050863.1 Olea europaea HOM05D001964 ORTHO05D001879 2.1e-08 63.5 50 62.0
Phvul.001G026200 Phaseolus vulgaris HOM05D001964 ORTHO05D001879 2.1e-08 63.5 46 60.9
FAN23G1983 Fragaria x ananassa HOM05D001964 ORTHO05D001879 2.8e-08 63.2 45 64.4
TWI73G0418 Tripterygium wilfordii HOM05D001964 ORTHO05D001879 2.8e-08 63.2 45 64.4
vmacro04588 Vaccinium macrocarpon HOM05D001964 ORTHO05D001879 2.8e-08 63.2 80 46.2
Cc07_g06810 Coffea canephora HOM05D001964 ORTHO05D001879 3.6e-08 62.8 44 70.5
CARHR235500 Cardamine hirsuta HOM05D001964 ORTHO05D001879 6.1e-08 62.0 44 63.6
Gohir.A12G074800 Gossypium hirsutum HOM05D001964 ORTHO05D001879 6.1e-08 62.0 47 55.3
Actinidia08256 Actinidia chinensis HOM05D001964 ORTHO05D001879 8.0e-08 61.6 42 61.9
Lj4A68T48 Lonicera japonica HOM05D001964 ORTHO05D001879 8.0e-08 61.6 64 51.6
COL.COLO4_11538 Corchorus olitorius HOM05D001964 ORTHO05D001879 1.0e-07 61.2 46 56.5
SalBow6G4336 Salvia bowleyana HOM05D001964 ORTHO05D001879 1.8e-07 60.5 49 53.1
SalBow8G1537 Salvia bowleyana HOM05D001964 ORTHO05D001879 1.8e-07 60.5 49 53.1
Rhsim07G0221900 Rhododendron simsii HOM05D001964 ORTHO05D001879 2.3e-07 60.1 64 46.9
AL7G24870 Arabidopsis lyrata HOM05D001964 ORTHO05D001879 3.0e-07 59.7 44 61.4
AT4G27780 Arabidopsis thaliana HOM05D001964 ORTHO05D001879 3.0e-07 59.7 44 61.4
Dinv44975 Davidia involucrata HOM05D001964 ORTHO05D001879 3.0e-07 59.7 64 50.0
Thhalv10025574m.g Eutrema salsugineum HOM05D001964 ORTHO05D001879 3.0e-07 59.7 44 61.4
Gohir.D12G073000 Gossypium hirsutum HOM05D001964 ORTHO05D001879 3.0e-07 59.7 47 55.3
Gorai.008G080300 Gossypium raimondii HOM05D001964 ORTHO05D001879 3.0e-07 59.7 47 55.3
Medtr1g418545 Medicago truncatula HOM05D001964 ORTHO05D001879 3.0e-07 59.7 40 62.5
Duzib147G0427 Durio zibethinus HOM05D001964 ORTHO05D001879 4.0e-07 59.3 183 31.1
Atru.chr3.197 Acer truncatum HOM05D001964 ORTHO05D001879 5.2e-07 58.9 166 31.9
Actinidia34236 Actinidia chinensis HOM05D001964 ORTHO05D001879 5.2e-07 58.9 45 57.8
arahy.Tifrunner.gnm1.ann1.PY5NER Arachis hypogaea HOM05D001964 ORTHO05D001879 5.2e-07 58.9 44 61.4
arahy.Tifrunner.gnm1.ann1.Q6Q4B7 Arachis hypogaea HOM05D001964 ORTHO05D001879 5.2e-07 58.9 44 61.4
MSTRG.24364 Avicennia marina HOM05D001964 ORTHO05D001879 5.2e-07 58.9 163 31.9
Duzib068G1035 Durio zibethinus HOM05D001964 ORTHO05D001879 5.2e-07 58.9 44 61.4
Eucgr.K00399 Eucalyptus grandis HOM05D001964 ORTHO05D001879 5.2e-07 58.9 44 61.4
Lsat_1_v5_gn_3_88120 Lactuca sativa HOM05D001964 ORTHO05D001879 5.2e-07 58.9 82 45.1
Lj4A159G57 Lonicera japonica HOM05D001964 ORTHO05D001879 5.2e-07 58.9 190 32.1
Potri.002G120200 Populus trichocarpa HOM05D001964 ORTHO05D001879 5.2e-07 58.9 57 54.4
Potri.014G018700 Populus trichocarpa HOM05D001964 ORTHO05D001879 5.2e-07 58.9 165 30.9
A03p57500 Brassica napus HOM05D001964 ORTHO05D001879 6.8e-07 58.5 44 59.1
BraA03t14818Z Brassica rapa HOM05D001964 ORTHO05D001879 6.8e-07 58.5 44 59.1
Carub.0007s1304 Capsella rubella HOM05D001964 ORTHO05D001879 6.8e-07 58.5 44 59.1
Haze_00237 Corylus avellana HOM05D001964 ORTHO05D001879 6.8e-07 58.5 44 61.4
Lalb_Chr09g0323481 Lupinus albus HOM05D001964 ORTHO05D001879 6.8e-07 58.5 43 55.8
Nn1g00319 Nelumbo nucifera HOM05D001964 ORTHO05D001879 6.8e-07 58.5 44 61.4
TAR381G0739 Trochodendron aralioides HOM05D001964 ORTHO05D001879 6.8e-07 58.5 41 65.9
Glyma.14G087600 Glycine max HOM05D001964 ORTHO05D001879 8.9e-07 58.2 46 56.5
Atru.chr3.168 Acer truncatum HOM05D001964 ORTHO05D001879 1.2e-06 57.8 166 31.9
arahy.Tifrunner.gnm1.ann1.K697CU Arachis hypogaea HOM05D001964 ORTHO05D001879 1.2e-06 57.8 44 56.8
arahy.Tifrunner.gnm1.ann1.SNFJ12 Arachis hypogaea HOM05D001964 ORTHO05D001879 1.2e-06 57.8 44 56.8
BcaC06g32665 Brassica carinata HOM05D001964 ORTHO05D001879 1.2e-06 57.8 45 57.8
BcaC09g50538 Brassica carinata HOM05D001964 ORTHO05D001879 1.2e-06 57.8 44 56.8
BcaNung01621 Brassica carinata HOM05D001964 ORTHO05D001879 1.2e-06 57.8 44 56.8
C01p24160 Brassica napus HOM05D001964 ORTHO05D001879 1.2e-06 57.8 44 56.8
BolC1t02373H Brassica oleracea HOM05D001964 ORTHO05D001879 1.2e-06 57.8 44 56.8
BraA01t01865Z Brassica rapa HOM05D001964 ORTHO05D001879 1.2e-06 57.8 44 56.8
Dinv29263 Davidia involucrata HOM05D001964 ORTHO05D001879 1.2e-06 57.8 44 59.1
Dinv35347 Davidia involucrata HOM05D001108 ORTHO05D001619 1.2e-06 57.8 44 59.1
ECA246G3208 Erigeron canadensis HOM05D001964 ORTHO05D001879 1.2e-06 57.8 37 70.3
Nitab4.5_0005771g0010 Nicotiana tabacum HOM05D001964 ORTHO05D001879 1.2e-06 57.8 43 55.8
Sp7g25740 Schrenkiella parvula HOM05D001964 ORTHO05D001879 1.2e-06 57.8 44 59.1
GSVIVG01038582001 Vitis vinifera HOM05D001964 ORTHO05D001879 1.2e-06 57.8 44 59.1
arahy.Tifrunner.gnm1.ann1.C1Z395 Arachis hypogaea HOM05D001964 ORTHO05D001879 1.5e-06 57.4 41 58.5
arahy.Tifrunner.gnm1.ann1.T1AGTK Arachis hypogaea HOM05D001964 ORTHO05D001879 1.5e-06 57.4 41 58.5
COL.COLO4_16800 Corchorus olitorius HOM05D001964 ORTHO05D001879 1.5e-06 57.4 44 59.1
Duzib205G0723 Durio zibethinus HOM05D001964 ORTHO05D001879 1.5e-06 57.4 44 59.1
HanXRQChr15g0485641 Helianthus annuus HOM05D001964 ORTHO05D001879 1.5e-06 57.4 44 61.4
Lsat_1_v5_gn_9_49141 Lactuca sativa HOM05D001964 ORTHO05D001879 1.5e-06 57.4 44 61.4
Nitab4.5_0001772g0040 Nicotiana tabacum HOM05D001964 ORTHO05D001879 1.5e-06 57.4 37 64.9
Nitab4.5_0012222g0010 Nicotiana tabacum HOM05D001964 ORTHO05D001879 1.5e-06 57.4 43 55.8
QL12p037575 Quercus lobata HOM05D001964 ORTHO05D001879 1.5e-06 57.4 57 52.6
Solyc03g082910.4 Solanum lycopersicum HOM05D001964 ORTHO05D001879 1.5e-06 57.4 43 55.8
Sopen03g022730 Solanum pennellii HOM05D001964 ORTHO05D001879 1.5e-06 57.4 43 55.8
PGSC0003DMG400018524 Solanum tuberosum HOM05D001964 ORTHO05D001879 1.5e-06 57.4 43 55.8
SGA_v2.0_scaffold14G06945 Striga asiatica HOM05D001964 ORTHO05D001879 1.5e-06 57.4 61 44.3
Actinidia08669 Actinidia chinensis HOM05D001964 ORTHO05D001879 2.0e-06 57.0 44 56.8
EL10As7g23810 Beta vulgaris HOM05D001964 ORTHO05D001879 2.0e-06 57.0 45 60.0
CANSAT21G2059 Cannabis sativa HOM05D001964 ORTHO05D001879 2.0e-06 57.0 45 55.6
CDE01G0749 Ceratophyllum demersum HOM05D001964 ORTHO05D001879 2.0e-06 57.0 44 56.8
Glyma.04G233600 Glycine max HOM05D001964 ORTHO05D001879 2.0e-06 57.0 44 59.1
Glyma.06G131200 Glycine max HOM05D001964 ORTHO05D001879 2.0e-06 57.0 44 59.1
Phvul.009G050500 Phaseolus vulgaris HOM05D001964 ORTHO05D001879 2.0e-06 57.0 44 59.1
Prupe.2G314100 Prunus persica HOM05D001964 ORTHO05D001879 2.0e-06 57.0 78 41.0
Thecc.03G202000 Theobroma cacao HOM05D001964 ORTHO05D001879 2.0e-06 57.0 44 59.1
TWI39G1041 Tripterygium wilfordii HOM05D001964 ORTHO05D001879 2.0e-06 57.0 44 59.1
ATR0810G204 Amborella trichopoda HOM05D001964 ORTHO05D001879 2.6e-06 56.6 47 57.4
Aqoxy6G02734 Aquilegia oxysepala HOM05D001964 ORTHO05D001879 2.6e-06 56.6 64 46.9
A01p19230 Brassica napus HOM05D001964 ORTHO05D001879 2.6e-06 56.6 44 56.8
CAN.G481.36 Capsicum annuum HOM05D001964 ORTHO05D001879 2.6e-06 56.6 43 53.5
CiPaw.01G007300 Carya illinoinensis HOM05D001964 ORTHO05D001879 2.6e-06 56.6 157 33.1
CiPaw.06G044700 Carya illinoinensis HOM05D001964 ORTHO05D001879 2.6e-06 56.6 44 56.8
PSO675G7178 Papaver somniferum HOM05D001964 ORTHO05D001879 2.6e-06 56.6 209 32.1
Peaxi162Scf00740g00243 Petunia axillaris HOM05D001964 ORTHO05D001879 2.6e-06 56.6 43 53.5
VMungo1309G0711 Vigna mungo HOM05D001964 ORTHO05D001879 2.6e-06 56.6 44 59.1
ATR0680G144 Amborella trichopoda HOM05D001964 ORTHO05D001879 3.4e-06 56.2 43 58.1
MSTRG.23694 Avicennia marina HOM05D001964 ORTHO05D001879 3.4e-06 56.2 48 60.4
DCAR_025777 Daucus carota HOM05D005883 ORTHO05D007682 3.4e-06 56.2 48 56.2
Duzib084G0046 Durio zibethinus HOM05D001964 ORTHO05D001879 3.4e-06 56.2 44 56.8
Migut.F01015 Erythranthe guttata HOM05D001964 ORTHO05D001879 3.4e-06 56.2 70 47.1
Gohir.D09G180200 Gossypium hirsutum HOM05D001964 ORTHO05D001879 3.4e-06 56.2 44 59.1
Gorai.006G202200 Gossypium raimondii HOM05D001964 ORTHO05D001879 3.4e-06 56.2 44 59.1
HanXRQChr15g0472731 Helianthus annuus HOM05D001964 ORTHO05D001879 3.4e-06 56.2 82 42.7
Sp6g15600 Schrenkiella parvula HOM05D001964 ORTHO05D001879 3.4e-06 56.2 44 56.8
TPR.G33667 Trifolium pratense HOM05D001964 ORTHO05D001879 3.4e-06 56.2 45 57.8
TPR.G3755 Trifolium pratense HOM05D001964 ORTHO05D001879 3.4e-06 56.2 40 62.5
Actinidia18661 Actinidia chinensis HOM05D001964 ORTHO05D001879 4.4e-06 55.8 44 54.5
CiPaw.05G198800 Carya illinoinensis HOM05D001964 ORTHO05D001879 4.4e-06 55.8 44 56.8
Ca_16725_v3 Cicer arietinum L. HOM05D001964 ORTHO05D001879 4.4e-06 55.8 44 56.8
Dinv39242 Davidia involucrata HOM05D001964 ORTHO05D001879 4.4e-06 55.8 148 30.4
Gohir.A09G185300 Gossypium hirsutum HOM05D001964 ORTHO05D001879 4.4e-06 55.8 44 56.8
MBI18_g16986_MAGBIO Magnolia biondii HOM05D001964 ORTHO05D001879 4.4e-06 55.8 43 60.5
Manes.01G040100 Manihot esculenta HOM05D001964 ORTHO05D001879 4.4e-06 55.8 44 56.8
Nitab4.5_0003228g0060 Nicotiana tabacum HOM05D001964 ORTHO05D001879 4.4e-06 55.8 179 32.4
Prupe.6G224100 Prunus persica HOM05D001964 ORTHO05D001879 4.4e-06 55.8 228 30.3
Cfa016208 Carpinus fangiana HOM05D001964 ORTHO05D001879 5.7e-06 55.5 44 59.1
CDE02G3119 Ceratophyllum demersum HOM05D001964 ORTHO05D001879 5.7e-06 55.5 44 54.5
Gohir.D11G206300 Gossypium hirsutum HOM05D001964 ORTHO05D001879 5.7e-06 55.5 174 33.3
Lj3A899G63 Lonicera japonica HOM05D001964 ORTHO05D001879 5.7e-06 55.5 44 59.1
Lalb_Chr23g0271661 Lupinus albus HOM05D001964 ORTHO05D001879 5.7e-06 55.5 44 56.8
MBI17_g21047_MAGBIO Magnolia biondii HOM05D001964 ORTHO05D001879 5.7e-06 55.5 44 56.8
PGR142G1958 Punica granatum HOM05D001964 ORTHO05D001879 5.7e-06 55.5 44 56.8
SGA_v2.0_scaffold44G16817 Striga asiatica HOM05D001964 ORTHO05D001879 5.7e-06 55.5 44 56.8
THA.LOC104825156 Tarenaya hassleriana HOM05D001964 ORTHO05D001879 5.7e-06 55.5 44 56.8
VMungo0647G1012 Vigna mungo HOM05D001964 ORTHO05D001879 5.7e-06 55.5 142 34.5
ECA232G2641 Erigeron canadensis HOM05D001964 ORTHO05D001879 7.5e-06 55.1 44 56.8
Migut.N02764 Erythranthe guttata HOM05D001964 ORTHO05D001879 7.5e-06 55.1 206 30.1
Lsat_1_v5_gn_4_131040 Lactuca sativa HOM05D001964 ORTHO05D001879 7.5e-06 55.1 86 38.4
Lj1g0001644 Lotus japonicus HOM05D001964 ORTHO05D001879 7.5e-06 55.1 44 54.5
MD01G1223600 Malus domestica HOM05D001964 ORTHO05D001879 7.5e-06 55.1 78 39.7
MD07G1294300 Malus domestica HOM05D001964 ORTHO05D001879 7.5e-06 55.1 78 39.7
PSO135G0495 Papaver somniferum HOM05D001964 ORTHO05D001879 7.5e-06 55.1 44 54.5
PSO384G2260 Papaver somniferum HOM05D001964 ORTHO05D001879 7.5e-06 55.1 44 54.5
AL8G28170 Arabidopsis lyrata HOM05D001964 ORTHO05D001879 9.8e-06 54.7 44 54.5
AT5G53470 Arabidopsis thaliana HOM05D001964 ORTHO05D001879 9.8e-06 54.7 44 54.5
CARHR266590 Cardamine hirsuta HOM05D001964 ORTHO05D001879 9.8e-06 54.7 44 54.5
Cc10_g05560 Coffea canephora HOM05D001964 ORTHO05D001879 9.8e-06 54.7 42 59.5
Thhalv10014004m.g Eutrema salsugineum HOM05D001964 ORTHO05D001879 9.8e-06 54.7 44 54.5
TAR629G0758 Trochodendron aralioides HOM05D001964 ORTHO05D001879 9.8e-06 54.7 44 54.5


User provided reference genes

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